Rh7DG259100

Mannose-1-phosphate guanyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0020450
Physical Location & Seq
Forward (+)
27240937 .. 27251552
10616 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG259100.1

Sequence Viewer

Length: 843 bp
ATGGTTTCAACTGCCGAGACTGGATGTGATTTTAGTACAAGATGGATGAGGAGCCATATATGTAGGAGTGGACTGAGCAATTGGAAAGCAGTGACCGATTTATGTTTTATGAGGAGCGTGAGTTTGCACTCTGTTTCTTCGATTTCCAATGAGCTTAGAGTGCCGGTGAGGTACTTGAAAGAGGATAAACCACATGCCTCAGCTGGTGGTATTTATTACTTCAGAGATTTGATCATGGAAGAAGGCCCGTCGCATATATTTTTGCTGAATTGTGATGTATGCTGCAGTTTTCCACTTCCAGATATGCTTGAGGCTCATATAAAATACGGTGGAATGGGTACAATGCTAGTAATCAAGGTTTCTGCGGAATCTGCCAACGAGTTTGGTGAGTTGGTTGCTGATCCAGTCACCAAAGAACTGTTGCATTACACTGAGAAACCAGAGACTTTTTTTCGCTTAGATTATCCGAACTCCATTTTGCGTTTCACCGCCGTGCCTCGCCTCCTCTCTCCACCGTCGATTTCCGCGGCCATGTCAACGCCGAAGATGGAACAACTGACCTTGGGAGCGAGCAACTGCATCATCCCGCTCCTTAAGGCCCTGAGGACCTCCCTCCTCTTCATCCACACCGTCTTCCTCTCGCTGCCTGTCAGAATCGCTCTCGTAATGGATTTGGACAGGTCTCAGTTCTTATTGAGATCTTATATTCGAATTCAGCTGCAGAAGATTCAGAAATACATCTTTCACATCTTAGCTACTGTTGAACTCTACAACCGTCTCTCCAAACAGGAGAAGGCATTTGCAAAAATGTGCAAAATGGTGATCTTGCTACTGGTTTGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00051 ko00520 ko01100 ko01110 map00051 map00520 map01100 map01110
Pfam Domains
Protein Families
Hexapep NTP_transferase

Protein Analysis

280

Amino Acids

31.82

Weight (kDa)

8.86

Isoelectric Point (pI)

51.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NTP_transferase PF00483 47 - 149 2.9e-09 Nucleotidyl transferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0020450)

Species Orthologous Gene IDs
pyrus_communis pycom14g15540
rosa_chinensis RchiOBHm_Chr5g0039351
rosa_laevigata RLG00000018459
rosa_multiflora Rmu_sc0000193.1_g000030
rosa_samantha Rh2CG598700 Rh7DG259100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 589
AccII CGCG 1 cut(s) 527
AciI CCGC 5 cut(s) 365, 489, 525, 527, 587
AclWI GGATC 1 cut(s) 395
AcoI YGGCCR 1 cut(s) 528
AcsI RAATTY 1 cut(s) 711
AcuI CTGAAG 1 cut(s) 205
AfaI GTAC 3 cut(s) 37, 173, 340
AflII CTTAAG 1 cut(s) 593
AgsI TTSAA 3 cut(s) 9, 178, 764
AleI CACNNNNGTG 1 cut(s) 491
AluBI AGCT 4 cut(s) 154, 203, 718, 755
AluI AGCT 4 cut(s) 154, 203, 718, 755
Alw26I GTCTC 4 cut(s) 11, 437, 687, 782
AlwI GGATC 1 cut(s) 395
AoxI GGCC 3 cut(s) 244, 528, 597
ApeKI GCWGC 3 cut(s) 282, 643, 718
ApoI RAATTY 1 cut(s) 711
AspS9I GGNCC 3 cut(s) 245, 598, 606
AsuHPI GGTGA 5 cut(s) 178, 398, 400, 478, 832
AsuII TTCGAA 1 cut(s) 709
AvaII GGWCC 1 cut(s) 606
AxyI CCTNAGG 1 cut(s) 602
BbsI GAAGAC 1 cut(s) 625
BbvCI CCTCAGC 1 cut(s) 199
BbvI GCAGC 3 cut(s) 269, 630, 705
BccI CCATC 2 cut(s) 36, 541
BceAI ACGGC 1 cut(s) 476
BclI TGATCA 1 cut(s) 231
BcoDI GTCTC 4 cut(s) 11, 437, 687, 782
BfaI CTAG 1 cut(s) 347
BfmI CTRYAG 2 cut(s) 283, 719
BfrI CTTAAG 1 cut(s) 593
BglII AGATCT 1 cut(s) 698
BisI GCNGC 4 cut(s) 283, 528, 644, 719
BlsI GCNGC 4 cut(s) 284, 529, 645, 720
Bme18I GGWCC 1 cut(s) 606
BmgT120I GGNCC 3 cut(s) 245, 598, 606
BmiI GGNNCC 1 cut(s) 53
BmsI GCATC 1 cut(s) 588
BpiI GAAGAC 1 cut(s) 625
Bpu10I CCTNAGC 1 cut(s) 199
Bpu14I TTCGAA 1 cut(s) 709
BpuEI CTTGAG 1 cut(s) 329
BsaI GGTCTC 1 cut(s) 687
BsaJI CCNNGG 2 cut(s) 525, 561
BsaXI ACNNNNNCTCC 4 cut(s) 106, 136, 764, 794
Bse118I RCCGGY 1 cut(s) 163
Bse1I ACTGG 3 cut(s) 25, 404, 837
Bse21I CCTNAGG 1 cut(s) 602
BseDI CCNNGG 2 cut(s) 525, 561
BseGI GGATG 4 cut(s) 29, 51, 582, 621
BseMII CTCAG 5 cut(s) 65, 213, 423, 593, 698
BseNI ACTGG 3 cut(s) 25, 404, 837
BseRI GAGGAG 4 cut(s) 64, 127, 494, 605
BseXI GCAGC 3 cut(s) 269, 630, 705
Bsh1236I CGCG 1 cut(s) 527
BshFI GGCC 3 cut(s) 246, 530, 599
BsiSI CCGG 1 cut(s) 164
BsmAI GTCTC 4 cut(s) 11, 437, 687, 782
BsmBI CGTCTC 1 cut(s) 782
BsnI GGCC 3 cut(s) 246, 530, 599
Bso31I GGTCTC 1 cut(s) 687
Bsp119I TTCGAA 1 cut(s) 709
Bsp143I GATC 4 cut(s) 231, 400, 698, 822
BspACI CCGC 5 cut(s) 365, 489, 525, 527, 587
BspANI GGCC 3 cut(s) 246, 530, 599
BspCNI CTCAG 5 cut(s) 66, 212, 424, 594, 697
BspFNI CGCG 1 cut(s) 527
BspLI GGNNCC 1 cut(s) 53
BspMAI CTGCAG 2 cut(s) 287, 723
BspPI GGATC 1 cut(s) 395
BspT104I TTCGAA 1 cut(s) 709
BspTI CTTAAG 1 cut(s) 593
BspTNI GGTCTC 1 cut(s) 687
BsrBI CCGCTC 1 cut(s) 589
BsrFI RCCGGY 1 cut(s) 163
BsrI ACTGG 3 cut(s) 25, 404, 837
BssAI RCCGGY 1 cut(s) 163
BssECI CCNNGG 2 cut(s) 525, 561
BssMI GATC 4 cut(s) 231, 400, 698, 822
BssT1I CCWWGG 1 cut(s) 561
Bst4CI ACNGT 6 cut(s) 329, 420, 516, 631, 760, 776
Bst6I CTCTTC 1 cut(s) 623
BstAFI CTTAAG 1 cut(s) 593
BstBI TTCGAA 1 cut(s) 709
BstC8I GCNNGC 1 cut(s) 571
BstDEI CTNAG 8 cut(s) 74, 155, 199, 432, 457, 602, 684, 751
BstDSI CCRYGG 1 cut(s) 525
BstF5I GGATG 4 cut(s) 29, 51, 582, 621
BstFNI CGCG 1 cut(s) 527
BstKTI GATC 4 cut(s) 234, 403, 701, 825
BstMAI GTCTC 4 cut(s) 11, 437, 687, 782
BstMBI GATC 4 cut(s) 231, 400, 698, 822
BstMWI GCNNNNNNNGC 2 cut(s) 160, 371
BstNSI RCATGY 1 cut(s) 197
BstSFI CTRYAG 2 cut(s) 283, 719
BstUI CGCG 1 cut(s) 527
BstV1I GCAGC 3 cut(s) 269, 630, 705
BstV2I GAAGAC 1 cut(s) 625
BstX2I RGATCY 1 cut(s) 698
BstYI RGATCY 1 cut(s) 698
Bsu36I CCTNAGG 1 cut(s) 602
BsuRI GGCC 3 cut(s) 246, 530, 599
BtgI CCRYGG 1 cut(s) 525
BtsCI GGATG 4 cut(s) 29, 51, 582, 621
BtsI GCAGTG 1 cut(s) 96
BtsIMutI CAGTG 2 cut(s) 96, 429
Cac8I GCNNGC 1 cut(s) 571
Cfr10I RCCGGY 1 cut(s) 163
Cfr13I GGNCC 3 cut(s) 245, 598, 606
Cfr42I CCGCGG 1 cut(s) 528
Csp6I GTAC 3 cut(s) 36, 172, 339
CviAII CATG 3 cut(s) 194, 235, 532
CviJI RGCY 9 cut(s) 54, 154, 203, 246, 314, 530, 599, 718, 755
CviKI_1 RGCY 9 cut(s) 54, 154, 203, 246, 314, 530, 599, 718, 755
CviQI GTAC 3 cut(s) 36, 172, 339
DdeI CTNAG 8 cut(s) 74, 155, 199, 432, 457, 602, 684, 751
DpnI GATC 4 cut(s) 233, 402, 700, 824
DpnII GATC 4 cut(s) 231, 400, 698, 822
EaeI YGGCCR 1 cut(s) 528
Eam1104I CTCTTC 1 cut(s) 623
EarI CTCTTC 1 cut(s) 623
Eco130I CCWWGG 1 cut(s) 561
Eco31I GGTCTC 1 cut(s) 687
Eco47I GGWCC 1 cut(s) 606
Eco57I CTGAAG 1 cut(s) 205
Eco81I CCTNAGG 1 cut(s) 602
EcoO109I RGGNCCY 2 cut(s) 598, 606
EcoRI GAATTC 1 cut(s) 711
EcoT14I CCWWGG 1 cut(s) 561
ErhI CCWWGG 1 cut(s) 561
Esp3I CGTCTC 1 cut(s) 782
FaeI CATG 3 cut(s) 197, 238, 535
FatI CATG 3 cut(s) 193, 234, 531
FauI CCCGC 1 cut(s) 594
FbaI TGATCA 1 cut(s) 231
Fnu4HI GCNGC 4 cut(s) 283, 528, 644, 719
FokI GGATG 4 cut(s) 36, 58, 569, 608
Fsp4HI GCNGC 4 cut(s) 283, 528, 644, 719
FspBI CTAG 1 cut(s) 347
GluI GCNGC 4 cut(s) 283, 528, 644, 719
HaeIII GGCC 3 cut(s) 246, 530, 599
HapII CCGG 1 cut(s) 164
Hin1II CATG 3 cut(s) 197, 238, 535
HincII GTYRAC 1 cut(s) 537
HindII GTYRAC 1 cut(s) 537
HinfI GANTC 3 cut(s) 368, 654, 727
HpaII CCGG 1 cut(s) 164
HphI GGTGA 5 cut(s) 178, 398, 400, 478, 832
Hpy166II GTNNAC 2 cut(s) 71, 537
Hpy188I TCNGA 4 cut(s) 224, 468, 653, 732
Hpy188III TCNNGA 1 cut(s) 299
Hpy8I GTNNAC 2 cut(s) 71, 537
Hpy99I CGWCG 2 cut(s) 253, 520
HpyAV CCTTC 2 cut(s) 236, 787
HpyCH4III ACNGT 6 cut(s) 329, 420, 516, 631, 760, 776
HpyCH4V TGCA 7 cut(s) 127, 285, 424, 579, 721, 803, 813
HpyF10VI GCNNNNNNNGC 2 cut(s) 160, 371
HpyF3I CTNAG 8 cut(s) 74, 155, 199, 432, 457, 602, 684, 751
Hsp92II CATG 3 cut(s) 197, 238, 535
Ksp22I TGATCA 1 cut(s) 231
KspI CCGCGG 1 cut(s) 528
Kzo9I GATC 4 cut(s) 231, 400, 698, 822
LmnI GCTCC 4 cut(s) 51, 114, 566, 594
Lsp1109I GCAGC 3 cut(s) 269, 630, 705
LweI GCATC 1 cut(s) 588
MaeI CTAG 1 cut(s) 347
MaeIII GTNAC 2 cut(s) 91, 406
MalI GATC 4 cut(s) 233, 402, 700, 824
MbiI CCGCTC 1 cut(s) 589
MboI GATC 4 cut(s) 231, 400, 698, 822
MboII GAAGA 6 cut(s) 129, 251, 556, 610, 625, 736
MfeI CAATTG 1 cut(s) 79
MflI RGATCY 1 cut(s) 698
MluCI AATT 3 cut(s) 79, 268, 711
MseI TTAA 1 cut(s) 594
MslI CAYNNNNRTG 1 cut(s) 491
MspA1I CMGCKG 3 cut(s) 203, 527, 718
MspCI CTTAAG 1 cut(s) 593
MspI CCGG 1 cut(s) 164
MunI CAATTG 1 cut(s) 79
MvnI CGCG 1 cut(s) 527
MwoI GCNNNNNNNGC 2 cut(s) 160, 371
NdeII GATC 4 cut(s) 231, 400, 698, 822
NlaIII CATG 3 cut(s) 197, 238, 535
NlaIV GGNNCC 1 cut(s) 53
NmeAIII GCCGAG 1 cut(s) 40
NmuCI GTSAC 2 cut(s) 91, 406
NspI RCATGY 1 cut(s) 197
NspV TTCGAA 1 cut(s) 709
OliI CACNNNNGTG 1 cut(s) 491
PfeI GAWTC 3 cut(s) 368, 654, 727
PkrI GCNGC 4 cut(s) 284, 529, 645, 720
PpuMI RGGWCCY 1 cut(s) 606
Psp5II RGGWCCY 1 cut(s) 606
PspN4I GGNNCC 1 cut(s) 53
PspPI GGNCC 3 cut(s) 245, 598, 606
PspPPI RGGWCCY 1 cut(s) 606
PstI CTGCAG 2 cut(s) 287, 723
PsuI RGATCY 1 cut(s) 698
PvuII CAGCTG 2 cut(s) 203, 718
RsaI GTAC 3 cut(s) 37, 173, 340
RsaNI GTAC 3 cut(s) 36, 172, 339
RseI CAYNNNNRTG 1 cut(s) 491
SacII CCGCGG 1 cut(s) 528
SaqAI TTAA 1 cut(s) 594
SatI GCNGC 4 cut(s) 283, 528, 644, 719
Sau3AI GATC 4 cut(s) 231, 400, 698, 822
Sau96I GGNCC 3 cut(s) 245, 598, 606
SetI ASST 9 cut(s) 156, 173, 205, 360, 563, 611, 683, 720, 757
SfaNI GCATC 1 cut(s) 588
SfcI CTRYAG 2 cut(s) 283, 719
Sfr303I CCGCGG 1 cut(s) 528
SfuI TTCGAA 1 cut(s) 709
SgrBI CCGCGG 1 cut(s) 528
SinI GGWCC 1 cut(s) 606
SmiMI CAYNNNNRTG 1 cut(s) 491
SmlI CTYRAG 2 cut(s) 308, 593
SmoI CTYRAG 2 cut(s) 308, 593
Sse9I AATT 3 cut(s) 79, 268, 711
SsiI CCGC 5 cut(s) 365, 489, 525, 527, 587
SspMI CTAG 1 cut(s) 347
StyI CCWWGG 1 cut(s) 561
TaaI ACNGT 6 cut(s) 329, 420, 516, 631, 760, 776
TaqI TCGA 3 cut(s) 140, 518, 709
TaqII GACCGA 1 cut(s) 110
TasI AATT 3 cut(s) 79, 268, 711
TatI WGTACW 1 cut(s) 35
TauI GCSGC 1 cut(s) 530
TfiI GAWTC 3 cut(s) 368, 654, 727
Tru1I TTAA 1 cut(s) 594
Tru9I TTAA 1 cut(s) 594
TscAI CASTG 2 cut(s) 96, 436
TseFI GTSAC 2 cut(s) 91, 406
TseI GCWGC 3 cut(s) 282, 643, 718
Tsp45I GTSAC 2 cut(s) 91, 406
TspDTI ATGAA 1 cut(s) 610
TspRI CASTG 2 cut(s) 96, 436
Vha464I CTTAAG 1 cut(s) 593
VpaK11BI GGWCC 1 cut(s) 606
XapI RAATTY 1 cut(s) 711
XceI RCATGY 1 cut(s) 197
XspI CTAG 1 cut(s) 347
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.