Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0006760

Physical Location & Seq

Genomic Coordinates Reverse (-)

20418742 .. 20420131

Gene Structure 1390 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom14g18870.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 798 bp

ATGATTTCTAACCTGGGATTTTCATTTGGAACAAGTTCTAGTAGTCCTGTTGAGGCTGGGCTTGCCGTGGGTGAGATAACTGTGGGAAAAGTTACTTTGCTTGAAAAAGCAGTTAAGGAATCTAAAAACAACTATGAAAAAGTGGCGCTAGCGCAAGCAACAGTAGATGGAGTCAAAGTGGAAGGGATCGATACAAATTTTGCGGTAATGAAGGAGTTACTCTTTCCAATGATGGAACTATGGACGTGCCTTCTTTCTTTGGCATTGTGGGAGGATCCGTTGAAGTCTTTGCTTTTCTGTTGTGTTTTCACTTACATCATTTGCAGGGGATGGCTGAGCTATGCCTTTGCACTGACGCTCATCTTTATTGCGGTCTTCATGGTCCTCACTCGATATTTTAGCGAAGGAAAGTCCACTCACGAGGTTAAGGTGTTAGCCCCTCCAGCGATGAATACGATGGAGCAGCTTTTGGCTGTTCAGAACGCAATATCTCAAGCTGAAGGGATCGTCCAGGATGGGAACGTTGTTCTTCTCAAGCTACGTGCCTTGTTGCTGTCCCTTTTTCCTCAGGCGAGTGAAAGATTTGCGATAGCTCTTGTAGTTATGGCTTTGGCTCTGGCATTTCTGCCCGTTAAATATATTGTTCTATATATCTTTTTGGAGACGTTTACATGTTATTCGCCGGTGAGGAGATCTAGCACAGAGAGATGGACGAGAAGATTGCGAGAGTGGTGGTTCAGCATACCCGCAGCGCCGGTTATTCTTGAAAGAGAAAAAGAAGAGAAGAAGAAGAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF639

Protein Analysis

266

Amino Acids

29.77

Weight (kDa)

8.52

Isoelectric Point (pI)

36.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006760)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48840 AT3G18350 AT3G18350 AT3G18350
fragaria_vesca	FvH4_5g11960 FvH4_5g11960 FvH4_5g11960 FvH4_5g11960
malus_domestica	MD06G1216900.v1.1 MD14G1227300.v1.1
prunus_persica	Prupe.5G222100_v2.0.a1 Prupe.5G222100_v2.0.a1 Prupe.5G222100_v2.0.a1 Prupe.5G222100_v2.0.a1
pyrus_communis	pycom06g19330 pycom14g18870
rosa_chinensis	RchiOBHm_Chr7g0185541
rosa_laevigata	RLG00000004901
rosa_multiflora	Rmu_sc0010190.1_g000011
rosa_roxburghii	Rroxscaffold_3G00268830
rosa_rugosa	Rorug06G0470200
rosa_samantha	Rh7AG072500 Rh7BG075300 Rh7CG075300 Rh7DG075000
rosa_wichuraiana	Rw7G006260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	203, 371, 747
AclI	AACGTT	1 cut(s)	522
AclWI	GGATC	4 cut(s)	194, 269, 282, 512
AcsI	RAATTY	1 cut(s)	196
AcuI	CTGAAG	1 cut(s)	519
AflIII	ACRYGT	1 cut(s)	671
AgsI	TTSAA	3 cut(s)	104, 283, 767
AjiI	CACGTC	1 cut(s)	246
AjnI	CCWGG	2 cut(s)	12, 510
AluBI	AGCT	5 cut(s)	339, 466, 497, 538, 593
AluI	AGCT	5 cut(s)	339, 466, 497, 538, 593
Alw26I	GTCTC	1 cut(s)	656
AlwI	GGATC	4 cut(s)	194, 269, 282, 512
ApeKI	GCWGC	2 cut(s)	463, 749
ApoI	RAATTY	1 cut(s)	196
Asp700I	GAANNNNTTC	1 cut(s)	34
AspLEI	GCGC	3 cut(s)	148, 154, 754
AspS9I	GGNCC	1 cut(s)	382
AsuHPI	GGTGA	2 cut(s)	83, 697
AsuNHI	GCTAGC	1 cut(s)	148
AvaII	GGWCC	1 cut(s)	382
AxyI	CCTNAGG	1 cut(s)	567
BamHI	GGATCC	1 cut(s)	274
BauI	CACGAG	1 cut(s)	419
BbsI	GAAGAC	1 cut(s)	367
BbvI	GCAGC	2 cut(s)	475, 761
BccI	CCATC	6 cut(s)	161, 226, 324, 451, 509, 702
BceAI	ACGGC	1 cut(s)	50
BcgI	CGANNNNNNTGC	2 cut(s)	703, 737
BciT130I	CCWGG	2 cut(s)	14, 512
BcoDI	GTCTC	1 cut(s)	656
BfaI	CTAG	3 cut(s)	39, 149, 696
BfoI	RGCGCY	2 cut(s)	149, 755
BglII	AGATCT	1 cut(s)	692
BisI	GCNGC	2 cut(s)	464, 750
BlpI	GCTNAGC	1 cut(s)	335
BlsI	GCNGC	2 cut(s)	465, 751
Bme1390I	CCNGG	2 cut(s)	14, 512
Bme18I	GGWCC	1 cut(s)	382
BmgBI	CACGTC	1 cut(s)	246
BmgT120I	GGNCC	1 cut(s)	382
BmiI	GGNNCC	1 cut(s)	276
BmrFI	CCNGG	2 cut(s)	14, 512
BmtI	GCTAGC	1 cut(s)	152
BpiI	GAAGAC	1 cut(s)	367
BpmI	CTGGAG	1 cut(s)	426
Bpu1102I	GCTNAGC	1 cut(s)	335
BpuEI	CTTGAG	2 cut(s)	477, 518
Bsa29I	ATCGAT	1 cut(s)	189
BsaAI	YACGTR	1 cut(s)	542
BsaJI	CCNNGG	2 cut(s)	13, 66
BsaXI	ACNNNNNCTCC	4 cut(s)	162, 192, 263, 293
Bse118I	RCCGGY	2 cut(s)	682, 754
Bse21I	CCTNAGG	1 cut(s)	567
BseBI	CCWGG	2 cut(s)	14, 512
BseCI	ATCGAT	1 cut(s)	189
BseDI	CCNNGG	2 cut(s)	13, 66
BseGI	GGATG	2 cut(s)	335, 520
BseMII	CTCAG	2 cut(s)	326, 581
BseRI	GAGGAG	1 cut(s)	703
BseXI	GCAGC	2 cut(s)	475, 761
BseYI	CCCAGC	1 cut(s)	56
BshVI	ATCGAT	1 cut(s)	189
BsiSI	CCGG	2 cut(s)	683, 755
BslFI	GGGAC	1 cut(s)	541
BsmAI	GTCTC	1 cut(s)	656
BsmBI	CGTCTC	1 cut(s)	656
BsmFI	GGGAC	1 cut(s)	541
Bsp143I	GATC	4 cut(s)	186, 274, 504, 692
Bsp1720I	GCTNAGC	1 cut(s)	335
BspACI	CCGC	3 cut(s)	203, 371, 747
BspCNI	CTCAG	2 cut(s)	327, 580
BspDI	ATCGAT	1 cut(s)	189
BspLI	GGNNCC	1 cut(s)	276
BspOI	GCTAGC	1 cut(s)	152
BspPI	GGATC	4 cut(s)	194, 269, 282, 512
BsrFI	RCCGGY	2 cut(s)	682, 754
BssAI	RCCGGY	2 cut(s)	682, 754
BssECI	CCNNGG	2 cut(s)	13, 66
BssMI	GATC	4 cut(s)	186, 274, 504, 692
BssSI	CACGAG	1 cut(s)	419
Bst2BI	CACGAG	1 cut(s)	419
Bst2UI	CCWGG	2 cut(s)	14, 512
Bst4CI	ACNGT	2 cut(s)	82, 163
Bst6I	CTCTTC	1 cut(s)	774
BstBAI	YACGTR	1 cut(s)	542
BstC8I	GCNNGC	3 cut(s)	63, 150, 156
BstDEI	CTNAG	2 cut(s)	335, 567
BstDSI	CCRYGG	1 cut(s)	66
BstF5I	GGATG	2 cut(s)	335, 520
BstH2I	RGCGCY	2 cut(s)	149, 755
BstHHI	GCGC	3 cut(s)	148, 154, 754
BstKTI	GATC	4 cut(s)	189, 277, 507, 695
BstMAI	GTCTC	1 cut(s)	656
BstMBI	GATC	4 cut(s)	186, 274, 504, 692
BstMWI	GCNNNNNNNGC	2 cut(s)	62, 443
BstNI	CCWGG	2 cut(s)	14, 512
BstNSI	RCATGY	1 cut(s)	675
BstSCI	CCNGG	2 cut(s)	12, 510
BstV1I	GCAGC	2 cut(s)	475, 761
BstV2I	GAAGAC	1 cut(s)	367
BstX2I	RGATCY	2 cut(s)	274, 692
BstYI	RGATCY	2 cut(s)	274, 692
Bsu15I	ATCGAT	1 cut(s)	189
Bsu36I	CCTNAGG	1 cut(s)	567
BsuTUI	ATCGAT	1 cut(s)	189
BtgI	CCRYGG	1 cut(s)	66
BtgZI	GCGATG	1 cut(s)	461
BtrI	CACGTC	1 cut(s)	246
BtsCI	GGATG	2 cut(s)	335, 520
BtsIMutI	CAGTG	1 cut(s)	350
Cac8I	GCNNGC	3 cut(s)	63, 150, 156
CfoI	GCGC	3 cut(s)	148, 154, 754
Cfr10I	RCCGGY	2 cut(s)	682, 754
Cfr13I	GGNCC	1 cut(s)	382
ClaI	ATCGAT	1 cut(s)	189
CseI	GACGC	1 cut(s)	364
CviAII	CATG	2 cut(s)	379, 672
DdeI	CTNAG	2 cut(s)	335, 567
DpnI	GATC	4 cut(s)	188, 276, 506, 694
DpnII	GATC	4 cut(s)	186, 274, 504, 692
Eam1104I	CTCTTC	1 cut(s)	774
EarI	CTCTTC	1 cut(s)	774
Eco47I	GGWCC	1 cut(s)	382
Eco57I	CTGAAG	1 cut(s)	519
Eco81I	CCTNAGG	1 cut(s)	567
EcoRII	CCWGG	2 cut(s)	12, 510
Esp3I	CGTCTC	1 cut(s)	656
FaeI	CATG	2 cut(s)	382, 675
FaqI	GGGAC	1 cut(s)	541
FatI	CATG	2 cut(s)	378, 671
FauI	CCCGC	1 cut(s)	754
Fnu4HI	GCNGC	2 cut(s)	464, 750
FokI	GGATG	2 cut(s)	342, 527
Fsp4HI	GCNGC	2 cut(s)	464, 750
FspBI	CTAG	3 cut(s)	39, 149, 696
GlaI	GCGC	3 cut(s)	147, 153, 753
GluI	GCNGC	2 cut(s)	464, 750
GsaI	CCCAGC	1 cut(s)	60
GsuI	CTGGAG	1 cut(s)	426
HaeII	RGCGCY	2 cut(s)	149, 755
HapII	CCGG	2 cut(s)	683, 755
HgaI	GACGC	1 cut(s)	364
HhaI	GCGC	3 cut(s)	148, 154, 754
Hin1II	CATG	2 cut(s)	382, 675
Hin6I	GCGC	3 cut(s)	146, 152, 752
HinP1I	GCGC	3 cut(s)	146, 152, 752
HinfI	GANTC	2 cut(s)	119, 171
HpaII	CCGG	2 cut(s)	683, 755
HphI	GGTGA	2 cut(s)	83, 697
Hpy166II	GTNNAC	2 cut(s)	414, 669
Hpy188I	TCNGA	1 cut(s)	480
Hpy188III	TCNNGA	2 cut(s)	419, 764
Hpy8I	GTNNAC	2 cut(s)	414, 669
HpyAV	CCTTC	5 cut(s)	176, 205, 260, 398, 494
HpyCH4III	ACNGT	2 cut(s)	82, 163
HpyCH4IV	ACGT	4 cut(s)	245, 522, 541, 665
HpyCH4V	TGCA	2 cut(s)	324, 350
HpyF10VI	GCNNNNNNNGC	2 cut(s)	62, 443
HpyF3I	CTNAG	2 cut(s)	335, 567
HpySE526I	ACGT	4 cut(s)	245, 522, 541, 665
Hsp92II	CATG	2 cut(s)	382, 675
HspAI	GCGC	3 cut(s)	146, 152, 752
Kzo9I	GATC	4 cut(s)	186, 274, 504, 692
LmnI	GCTCC	1 cut(s)	460
Lsp1109I	GCAGC	2 cut(s)	475, 761
MaeI	CTAG	3 cut(s)	39, 149, 696
MaeII	ACGT	4 cut(s)	245, 522, 541, 665
MaeIII	GTNAC	2 cut(s)	91, 216
MalI	GATC	4 cut(s)	188, 276, 506, 694
MboI	GATC	4 cut(s)	186, 274, 504, 692
MboII	GAAGA	5 cut(s)	367, 521, 729, 791, 796
MflI	RGATCY	2 cut(s)	274, 692
MluCI	AATT	1 cut(s)	196
MlyI	GAGTC	1 cut(s)	180
MnlI	CCTC	7 cut(s)	46, 265, 395, 415, 450, 576, 681
MroXI	GAANNNNTTC	1 cut(s)	34
MseI	TTAA	3 cut(s)	114, 426, 633
MspI	CCGG	2 cut(s)	683, 755
MspR9I	CCNGG	2 cut(s)	14, 512
MvaI	CCWGG	2 cut(s)	14, 512
MwoI	GCNNNNNNNGC	2 cut(s)	62, 443
NdeII	GATC	4 cut(s)	186, 274, 504, 692
NheI	GCTAGC	1 cut(s)	148
NlaIII	CATG	2 cut(s)	382, 675
NlaIV	GGNNCC	1 cut(s)	276
NspI	RCATGY	1 cut(s)	675
PciI	ACATGT	1 cut(s)	671
PdmI	GAANNNNTTC	1 cut(s)	34
PfeI	GAWTC	1 cut(s)	119
PfoI	TCCNGGA	1 cut(s)	510
PkrI	GCNGC	2 cut(s)	465, 751
PleI	GAGTC	1 cut(s)	179
PpsI	GAGTC	1 cut(s)	179
Ppu21I	YACGTR	1 cut(s)	542
PscI	ACATGT	1 cut(s)	671
Psp1406I	AACGTT	1 cut(s)	522
Psp6I	CCWGG	2 cut(s)	12, 510
PspFI	CCCAGC	1 cut(s)	56
PspGI	CCWGG	2 cut(s)	12, 510
PspN4I	GGNNCC	1 cut(s)	276
PspPI	GGNCC	1 cut(s)	382
PsuI	RGATCY	2 cut(s)	274, 692
SaqAI	TTAA	3 cut(s)	114, 426, 633
SatI	GCNGC	2 cut(s)	464, 750
Sau3AI	GATC	4 cut(s)	186, 274, 504, 692
Sau96I	GGNCC	1 cut(s)	382
SchI	GAGTC	1 cut(s)	180
ScrFI	CCNGG	2 cut(s)	14, 512
SgrAI	CRCCGGYG	1 cut(s)	682
SinI	GGWCC	1 cut(s)	382
SmlI	CTYRAG	2 cut(s)	492, 533
SmoI	CTYRAG	2 cut(s)	492, 533
Sse9I	AATT	1 cut(s)	196
SsiI	CCGC	3 cut(s)	203, 371, 747
SspMI	CTAG	3 cut(s)	39, 149, 696
StyD4I	CCNGG	2 cut(s)	12, 510
TaaI	ACNGT	2 cut(s)	82, 163
TaiI	ACGT	4 cut(s)	248, 525, 544, 668
TaqI	TCGA	2 cut(s)	189, 391
TasI	AATT	1 cut(s)	196
TfiI	GAWTC	1 cut(s)	119
Tru1I	TTAA	3 cut(s)	114, 426, 633
Tru9I	TTAA	3 cut(s)	114, 426, 633
TscAI	CASTG	1 cut(s)	357
TseI	GCWGC	2 cut(s)	463, 749
TspDTI	ATGAA	5 cut(s)	12, 150, 224, 367, 464
TspGWI	ACGGA	1 cut(s)	267
TspRI	CASTG	1 cut(s)	357
VpaK11BI	GGWCC	1 cut(s)	382
XapI	RAATTY	1 cut(s)	196
XceI	RCATGY	1 cut(s)	675
XmnI	GAANNNNTTC	1 cut(s)	34
XspI	CTAG	3 cut(s)	39, 149, 696

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.