Rh7CG075300

Plant protein of unknown function (DUF639)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0006760
Physical Location & Seq
Reverse (-)
5366514 .. 5373850
7337 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG075300.1

Sequence Viewer

Length: 1533 bp
ATGGCGGTGGCAAGCAAAACCAGAAATATGCTCGAGAATCTTGTAAGAGAAGGATCGTTCAAATGGTTGATTGGAAATCGAAGCCCTTTTGATGATGAATTGGAGGAGATGGACAGGTCTCCTTCAGCCCCAACAAATTGGATACCGGAGCTATCTCCTATTGCAAATGTAGTTGTCCGTAGATGCTCCAAAATCCTTGGTGTTCCTACGACTGAGCTTTGTAAAAACTTCAGTGCAGAGGCTTCCGAGTCTATAAAGCATCCATCTCGCTATGCAAGGAACTTTTTGGAATACTGCTCGTTCAGAGCTCTCGCTCTGTCAACTCAGGTGACAGGTCATCTGGCTGATAAAAAGTTTCGACGCCTAACATATGATATGATGCTAGCTTGGGAGGCTCCAGCTTCTGACAGCCAACCTTTGCTAAATTTAAATGAGGATTTATCAGTTGGGATAGAGGCTTTCTCTAGAATAGCTCCGTCAGTTCCCATTATTGCAAATGTGATTATCAGCGAAAATCTTTTTGAGGTACTTGCAACATCAACTGGTGGGAGACTTCAGTTCTCCACTTATGACAAGTATCTAAGTGGACTGGAAAGAGCAATAAGAAAAATGAGGACCCAATCAGAGTCATCTCTTCTTTCTGCTGTACGATCATCAAGAGGAGAGAGAATTCTGGAAGTGGATGGAACAGTAACTACACAACCAGTTCTTGAGCATGTGGGAATTTCTACGTGGCCTGGACGGTTGATTCTGACAGACCATGCACTTTACTTTGAGGCTCTGCGTGTTGTATCTTATGACAAGGCAAAACGATATGACCTATCAGATGACCTAAAACAGGTCGTGAAACCTGAGTTGACTGGCCCATGGGGTACTAGACTGTTTGACAAGGCAGTCTTTTATAAATCAATTTCATTATCAGAACCAGTTGTGATAGAGTTTCCTGAGCTGAAGGGGCATTCTCGTCGTGATTACTGGCTAGCGATCATAAGAGAGATTTTGTATGTTCACAGATTTATACATAAATACCAAATCAAGGGGGTCAAACGAGATGAAGCGCTATCAAAGGCTGTGCTTGGGATTCTGCGAGTACAAGCCATTCAAGAAATTTCTTCTGCTCCTTTACGCTCTGAGGGTCTTTTAATGTTCAATCTTTGTGATCAATTACCAGGTGGAGACTTGATACTGGAAACTCTTGCAAATATGTCAACCGTAAGCGAATTAAATAGGTCTGACACATCTAAGTCTGGTGGTGGAATGTATTCAATCTCAGCGTTAGATATGATTTCTAACTTGGGCTTCGCATTTGGAACAAGTTCTAATAATTCGGTTGAGGCTGGTCTTGCTGTGGGTGAGGTAACTGTTGGACAACTGACTTCACTGGAAAGAGCAGTTAAGGAATCAAAAAACAATTACGAAAAAGTGGCACAAGCACAAGCAACAGTAGATGGAGTCAAAGTGGAAGGCATTGATACGAATGTTGCAGTGATGAAGGTATTTGCTGATATTAAAGGTTTTTTTCCCAGTTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF639

Protein Analysis

510

Amino Acids

56.58

Weight (kDa)

6.45

Isoelectric Point (pI)

43.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF639 PF04842 458 - 498 5e-11 Plant protein of unknown function (DUF639)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 903
AasI GACNNNNNNGTC 1 cut(s) 893
AciI CCGC 1 cut(s) 5
AclWI GGATC 1 cut(s) 61
AcsI RAATTY 4 cut(s) 424, 669, 723, 1107
AcuI CTGAAG 4 cut(s) 108, 214, 539, 971
AcyI GRCGYC 1 cut(s) 361
AfaI GTAC 4 cut(s) 528, 648, 874, 1092
AfeI AGCGCT 1 cut(s) 1059
AfiI CCNNNNNNNGG 2 cut(s) 838, 1036
AgsI TTSAA 4 cut(s) 61, 1103, 1150, 1266
AjnI CCWGG 2 cut(s) 736, 1168
AluBI AGCT 7 cut(s) 151, 217, 308, 386, 401, 473, 949
AluI AGCT 7 cut(s) 151, 217, 308, 386, 401, 473, 949
Alw21I GWGCWC 1 cut(s) 310
Alw26I GTCTC 3 cut(s) 123, 544, 1170
AlwI GGATC 1 cut(s) 61
AlwNI CAGNNNCTG 1 cut(s) 404
Ama87I CYCGRG 1 cut(s) 32
Aor51HI AGCGCT 1 cut(s) 1059
AoxI GGCC 2 cut(s) 734, 862
ApoI RAATTY 4 cut(s) 424, 669, 723, 1107
Asp700I GAANNNNTTC 2 cut(s) 1261, 1315
AspLEI GCGC 1 cut(s) 1060
AspS9I GGNCC 2 cut(s) 615, 863
AsuHPI GGTGA 2 cut(s) 340, 1364
AsuNHI GCTAGC 2 cut(s) 382, 979
AvaI CYCGRG 1 cut(s) 32
AvaII GGWCC 1 cut(s) 615
BaeI ACNNNNGTAYC 2 cut(s) 1464, 1497
BanII GRGCYC 1 cut(s) 310
Bbv12I GWGCWC 1 cut(s) 310
BccI CCATC 4 cut(s) 103, 271, 677, 1442
BcgI CGANNNNNNTGC 4 cut(s) 248, 282, 947, 981
BciT130I CCWGG 2 cut(s) 738, 1170
BciVI GTATCC 1 cut(s) 135
BclI TGATCA 1 cut(s) 1159
BcoDI GTCTC 3 cut(s) 123, 544, 1170
BfaI CTAG 4 cut(s) 383, 465, 876, 980
BfoI RGCGCY 1 cut(s) 1061
BfuI GTATCC 1 cut(s) 135
Bme1390I CCNGG 2 cut(s) 738, 1170
Bme18I GGWCC 1 cut(s) 615
BmeT110I CYCGRG 1 cut(s) 32
BmgT120I GGNCC 2 cut(s) 615, 863
BmiI GGNNCC 2 cut(s) 396, 617
BmrFI CCNGG 2 cut(s) 738, 1170
BmrI ACTGGG 1 cut(s) 1518
BmsI GCATC 3 cut(s) 173, 268, 369
BmtI GCTAGC 2 cut(s) 386, 983
BmuI ACTGGG 1 cut(s) 1518
BplI GAGNNNNNCTC 2 cut(s) 446, 478
BpmI CTGGAG 1 cut(s) 381
Bpu10I CCTNAGC 1 cut(s) 945
BpuEI CTTGAG 1 cut(s) 731
BsaAI YACGTR 1 cut(s) 732
BsaHI GRCGYC 1 cut(s) 361
BsaI GGTCTC 1 cut(s) 123
BsaJI CCNNGG 2 cut(s) 196, 866
BsaWI WCCGGW 1 cut(s) 145
BsaXI ACNNNNNCTCC 2 cut(s) 1443, 1473
Bsc4I CCNNNNNNNGG 2 cut(s) 838, 1036
Bse1I ACTGG 9 cut(s) 547, 594, 704, 865, 926, 980, 1191, 1386, 1524
BseBI CCWGG 2 cut(s) 738, 1170
BseDI CCNNGG 2 cut(s) 196, 866
BseGI GGATG 2 cut(s) 259, 688
BseLI CCNNNNNNNGG 2 cut(s) 838, 1036
BseMII CTCAG 6 cut(s) 204, 338, 843, 936, 1122, 1284
BseNI ACTGG 9 cut(s) 547, 594, 704, 865, 926, 980, 1191, 1386, 1524
BseRI GAGGAG 2 cut(s) 119, 675
BsgI GTGCAG 1 cut(s) 255
BshFI GGCC 2 cut(s) 736, 864
BsiHKAI GWGCWC 1 cut(s) 310
BsiHKCI CYCGRG 1 cut(s) 32
BsiSI CCGG 1 cut(s) 146
BslI CCNNNNNNNGG 2 cut(s) 838, 1036
BsmAI GTCTC 3 cut(s) 123, 544, 1170
BsmI GAATGC 1 cut(s) 958
BsnI GGCC 2 cut(s) 736, 864
Bso31I GGTCTC 1 cut(s) 123
BsoBI CYCGRG 1 cut(s) 32
Bsp1286I GDGCHC 1 cut(s) 310
Bsp143I GATC 4 cut(s) 53, 650, 984, 1159
Bsp19I CCATGG 1 cut(s) 866
BspACI CCGC 1 cut(s) 5
BspANI GGCC 2 cut(s) 736, 864
BspCNI CTCAG 6 cut(s) 205, 337, 844, 937, 1123, 1283
BspLI GGNNCC 2 cut(s) 396, 617
BspOI GCTAGC 2 cut(s) 386, 983
BspPI GGATC 1 cut(s) 61
BspTNI GGTCTC 1 cut(s) 123
BsrI ACTGG 9 cut(s) 547, 594, 704, 865, 926, 980, 1191, 1386, 1524
BssECI CCNNGG 2 cut(s) 196, 866
BssMI GATC 4 cut(s) 53, 650, 984, 1159
BssNI GRCGYC 1 cut(s) 361
BssT1I CCWWGG 2 cut(s) 196, 866
Bst2UI CCWGG 2 cut(s) 738, 1170
Bst4CI ACNGT 6 cut(s) 691, 744, 882, 1213, 1363, 1444
Bst6I CTCTTC 1 cut(s) 639
BstACI GRCGYC 1 cut(s) 361
BstBAI YACGTR 1 cut(s) 732
BstC8I GCNNGC 3 cut(s) 13, 384, 981
BstDEI CTNAG 8 cut(s) 213, 324, 581, 852, 945, 1131, 1242, 1270
BstDSI CCRYGG 1 cut(s) 866
BstENI CCTNNNNNAGG 1 cut(s) 836
BstF5I GGATG 2 cut(s) 259, 688
BstH2I RGCGCY 1 cut(s) 1061
BstHHI GCGC 1 cut(s) 1060
BstKTI GATC 4 cut(s) 56, 653, 987, 1162
BstMAI GTCTC 3 cut(s) 123, 544, 1170
BstMBI GATC 4 cut(s) 53, 650, 984, 1159
BstMWI GCNNNNNNNGC 3 cut(s) 392, 955, 1343
BstNI CCWGG 2 cut(s) 738, 1170
BstNSI RCATGY 1 cut(s) 719
BstSCI CCNGG 2 cut(s) 736, 1168
BstXI CCANNNNNNTGG 1 cut(s) 138
BsuI GTATCC 1 cut(s) 135
BsuRI GGCC 2 cut(s) 736, 864
BtgI CCRYGG 1 cut(s) 866
BtsCI GGATG 2 cut(s) 259, 688
BtsI GCAGTG 1 cut(s) 1491
BtsIMutI CAGTG 3 cut(s) 238, 1379, 1491
Cac8I GCNNGC 3 cut(s) 13, 384, 981
CaiI CAGNNNCTG 1 cut(s) 404
CfoI GCGC 1 cut(s) 1060
Cfr13I GGNCC 2 cut(s) 615, 863
CseI GACGC 1 cut(s) 369
CsiI ACCWGGT 1 cut(s) 1168
Csp6I GTAC 4 cut(s) 527, 647, 873, 1091
CviAII CATG 3 cut(s) 716, 761, 867
CviQI GTAC 4 cut(s) 527, 647, 873, 1091
DdeI CTNAG 8 cut(s) 213, 324, 581, 852, 945, 1131, 1242, 1270
DpnI GATC 4 cut(s) 55, 652, 986, 1161
DpnII GATC 4 cut(s) 53, 650, 984, 1159
DraI TTTAAA 1 cut(s) 429
DrdI GACNNNNNNGTC 1 cut(s) 893
DseDI GACNNNNNNGTC 1 cut(s) 893
Eam1104I CTCTTC 1 cut(s) 639
EarI CTCTTC 1 cut(s) 639
Ecl136II GAGCTC 1 cut(s) 308
Eco130I CCWWGG 2 cut(s) 196, 866
Eco24I GRGCYC 1 cut(s) 310
Eco31I GGTCTC 1 cut(s) 123
Eco47I GGWCC 1 cut(s) 615
Eco47III AGCGCT 1 cut(s) 1059
Eco53kI GAGCTC 1 cut(s) 308
Eco57I CTGAAG 4 cut(s) 108, 214, 539, 971
Eco88I CYCGRG 1 cut(s) 32
EcoICRI GAGCTC 1 cut(s) 308
EcoNI CCTNNNNNAGG 1 cut(s) 836
EcoO109I RGGNCCY 1 cut(s) 615
EcoRI GAATTC 1 cut(s) 669
EcoRII CCWGG 2 cut(s) 736, 1168
EcoT14I CCWWGG 2 cut(s) 196, 866
EcoT38I GRGCYC 1 cut(s) 310
ErhI CCWWGG 2 cut(s) 196, 866
FaeI CATG 3 cut(s) 719, 764, 870
FalI AAGNNNNNCTT 2 cut(s) 881, 913
FatI CATG 3 cut(s) 715, 760, 866
FauNDI CATATG 1 cut(s) 370
FbaI TGATCA 1 cut(s) 1159
FokI GGATG 2 cut(s) 246, 695
FriOI GRGCYC 1 cut(s) 310
FspBI CTAG 4 cut(s) 383, 465, 876, 980
GlaI GCGC 1 cut(s) 1059
GsuI CTGGAG 1 cut(s) 381
HaeII RGCGCY 1 cut(s) 1061
HaeIII GGCC 2 cut(s) 736, 864
HapII CCGG 1 cut(s) 146
HgaI GACGC 1 cut(s) 369
HhaI GCGC 1 cut(s) 1060
Hin1I GRCGYC 1 cut(s) 361
Hin1II CATG 3 cut(s) 719, 764, 870
Hin6I GCGC 1 cut(s) 1058
HinP1I GCGC 1 cut(s) 1058
HincII GTYRAC 3 cut(s) 321, 858, 1209
HindII GTYRAC 3 cut(s) 321, 858, 1209
HinfI GANTC 7 cut(s) 37, 248, 626, 748, 1081, 1400, 1452
HpaII CCGG 1 cut(s) 146
HphI GGTGA 2 cut(s) 340, 1364
Hpy166II GTNNAC 5 cut(s) 321, 587, 858, 1009, 1209
Hpy188I TCNGA 9 cut(s) 247, 305, 406, 625, 753, 826, 922, 1132, 1234
Hpy188III TCNNGA 9 cut(s) 34, 465, 657, 674, 710, 844, 944, 968, 1103
Hpy8I GTNNAC 5 cut(s) 321, 587, 858, 1009, 1209
Hpy99I CGWCG 2 cut(s) 363, 969
HpyAV CCTTC 5 cut(s) 44, 132, 946, 1457, 1486
HpyCH4III ACNGT 6 cut(s) 691, 744, 882, 1213, 1363, 1444
HpyCH4IV ACGT 1 cut(s) 731
HpyCH4V TGCA 8 cut(s) 164, 236, 275, 494, 533, 764, 1199, 1484
HpyF10VI GCNNNNNNNGC 3 cut(s) 392, 955, 1343
HpyF3I CTNAG 8 cut(s) 213, 324, 581, 852, 945, 1131, 1242, 1270
HpySE526I ACGT 1 cut(s) 731
Hsp92I GRCGYC 1 cut(s) 361
Hsp92II CATG 3 cut(s) 719, 764, 870
HspAI GCGC 1 cut(s) 1058
Ksp22I TGATCA 1 cut(s) 1159
Kzo9I GATC 4 cut(s) 53, 650, 984, 1159
LmnI GCTCC 5 cut(s) 148, 191, 400, 478, 1123
LweI GCATC 3 cut(s) 173, 268, 369
MabI ACCWGGT 1 cut(s) 1168
MaeI CTAG 4 cut(s) 383, 465, 876, 980
MaeII ACGT 1 cut(s) 731
MaeIII GTNAC 3 cut(s) 328, 691, 1357
MalI GATC 4 cut(s) 55, 652, 986, 1161
MboI GATC 4 cut(s) 53, 650, 984, 1159
MboII GAAGA 2 cut(s) 626, 1104
MhlI GDGCHC 1 cut(s) 310
MlyI GAGTC 3 cut(s) 257, 635, 1461
MmeI TCCRAC 1 cut(s) 1345
MroXI GAANNNNTTC 2 cut(s) 1261, 1315
MseI TTAA 6 cut(s) 428, 1142, 1223, 1395, 1509, 1531
MspI CCGG 1 cut(s) 146
MspR9I CCNGG 2 cut(s) 738, 1170
Mva1269I GAATGC 1 cut(s) 958
MvaI CCWGG 2 cut(s) 738, 1170
MwoI GCNNNNNNNGC 3 cut(s) 392, 955, 1343
NcoI CCATGG 1 cut(s) 866
NdeI CATATG 1 cut(s) 370
NdeII GATC 4 cut(s) 53, 650, 984, 1159
NheI GCTAGC 2 cut(s) 382, 979
NlaIII CATG 3 cut(s) 719, 764, 870
NlaIV GGNNCC 2 cut(s) 396, 617
NmuCI GTSAC 1 cut(s) 328
NspI RCATGY 1 cut(s) 719
PaeR7I CTCGAG 1 cut(s) 32
PctI GAATGC 1 cut(s) 958
PdmI GAANNNNTTC 2 cut(s) 1261, 1315
PfeI GAWTC 4 cut(s) 37, 748, 1081, 1400
PleI GAGTC 3 cut(s) 256, 634, 1460
PpsI GAGTC 3 cut(s) 256, 634, 1460
Ppu21I YACGTR 1 cut(s) 732
PpuMI RGGWCCY 1 cut(s) 615
PsiI TTATAA 1 cut(s) 903
Psp124BI GAGCTC 1 cut(s) 310
Psp5II RGGWCCY 1 cut(s) 615
Psp6I CCWGG 2 cut(s) 736, 1168
PspGI CCWGG 2 cut(s) 736, 1168
PspN4I GGNNCC 2 cut(s) 396, 617
PspPI GGNCC 2 cut(s) 615, 863
PspPPI RGGWCCY 1 cut(s) 615
PsrI GAACNNNNNNTAC 2 cut(s) 679, 711
PstNI CAGNNNCTG 1 cut(s) 404
RsaI GTAC 4 cut(s) 528, 648, 874, 1092
RsaNI GTAC 4 cut(s) 527, 647, 873, 1091
SacI GAGCTC 1 cut(s) 310
SaqAI TTAA 6 cut(s) 428, 1142, 1223, 1395, 1509, 1531
Sau3AI GATC 4 cut(s) 53, 650, 984, 1159
Sau96I GGNCC 2 cut(s) 615, 863
SchI GAGTC 3 cut(s) 257, 635, 1461
ScrFI CCNGG 2 cut(s) 738, 1170
SduI GDGCHC 1 cut(s) 310
SexAI ACCWGGT 1 cut(s) 1168
SfaNI GCATC 3 cut(s) 173, 268, 369
Sfr274I CTCGAG 1 cut(s) 32
SinI GGWCC 1 cut(s) 615
SlaI CTCGAG 1 cut(s) 32
SmiI ATTTAAAT 1 cut(s) 429
SmlI CTYRAG 2 cut(s) 32, 710
SmoI CTYRAG 2 cut(s) 32, 710
SsiI CCGC 1 cut(s) 5
SspMI CTAG 4 cut(s) 383, 465, 876, 980
SstI GAGCTC 1 cut(s) 310
StyD4I CCNGG 2 cut(s) 736, 1168
StyI CCWWGG 2 cut(s) 196, 866
SwaI ATTTAAAT 1 cut(s) 429
TaaI ACNGT 6 cut(s) 691, 744, 882, 1213, 1363, 1444
TaiI ACGT 1 cut(s) 734
TaqI TCGA 3 cut(s) 33, 79, 358
TatI WGTACW 1 cut(s) 1090
TfiI GAWTC 4 cut(s) 37, 748, 1081, 1400
Tru1I TTAA 6 cut(s) 428, 1142, 1223, 1395, 1509, 1531
Tru9I TTAA 6 cut(s) 428, 1142, 1223, 1395, 1509, 1531
TscAI CASTG 3 cut(s) 238, 1386, 1491
TseFI GTSAC 1 cut(s) 328
Tsp45I GTSAC 1 cut(s) 328
TspDTI ATGAA 4 cut(s) 111, 903, 1068, 1505
TspGWI ACGGA 2 cut(s) 167, 465
TspRI CASTG 3 cut(s) 238, 1386, 1491
VpaK11BI GGWCC 1 cut(s) 615
XagI CCTNNNNNAGG 1 cut(s) 836
XapI RAATTY 4 cut(s) 424, 669, 723, 1107
XbaI TCTAGA 1 cut(s) 464
XceI RCATGY 1 cut(s) 719
XhoI CTCGAG 1 cut(s) 32
XmnI GAANNNNTTC 2 cut(s) 1261, 1315
XspI CTAG 4 cut(s) 383, 465, 876, 980
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.