pycom14g18870

Plant protein of unknown function (DUF639)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr14
OG0006760
Physical Location & Seq
Reverse (-)
20418742 .. 20420131
1390 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 798 bp
ATGATTTCTAACCTGGGATTTTCATTTGGAACAAGTTCTAGTAGTCCTGTTGAGGCTGGGCTTGCCGTGGGTGAGATAACTGTGGGAAAAGTTACTTTGCTTGAAAAAGCAGTTAAGGAATCTAAAAACAACTATGAAAAAGTGGCGCTAGCGCAAGCAACAGTAGATGGAGTCAAAGTGGAAGGGATCGATACAAATTTTGCGGTAATGAAGGAGTTACTCTTTCCAATGATGGAACTATGGACGTGCCTTCTTTCTTTGGCATTGTGGGAGGATCCGTTGAAGTCTTTGCTTTTCTGTTGTGTTTTCACTTACATCATTTGCAGGGGATGGCTGAGCTATGCCTTTGCACTGACGCTCATCTTTATTGCGGTCTTCATGGTCCTCACTCGATATTTTAGCGAAGGAAAGTCCACTCACGAGGTTAAGGTGTTAGCCCCTCCAGCGATGAATACGATGGAGCAGCTTTTGGCTGTTCAGAACGCAATATCTCAAGCTGAAGGGATCGTCCAGGATGGGAACGTTGTTCTTCTCAAGCTACGTGCCTTGTTGCTGTCCCTTTTTCCTCAGGCGAGTGAAAGATTTGCGATAGCTCTTGTAGTTATGGCTTTGGCTCTGGCATTTCTGCCCGTTAAATATATTGTTCTATATATCTTTTTGGAGACGTTTACATGTTATTCGCCGGTGAGGAGATCTAGCACAGAGAGATGGACGAGAAGATTGCGAGAGTGGTGGTTCAGCATACCCGCAGCGCCGGTTATTCTTGAAAGAGAAAAAGAAGAGAAGAAGAAGAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF639

Protein Analysis

266

Amino Acids

29.77

Weight (kDa)

8.52

Isoelectric Point (pI)

36.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF639 PF04842 31 - 258 7.4e-85 Plant protein of unknown function (DUF639)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 203, 371, 747
AclI AACGTT 1 cut(s) 522
AclWI GGATC 4 cut(s) 194, 269, 282, 512
AcsI RAATTY 1 cut(s) 196
AcuI CTGAAG 1 cut(s) 519
AflIII ACRYGT 1 cut(s) 671
AgsI TTSAA 3 cut(s) 104, 283, 767
AjiI CACGTC 1 cut(s) 246
AjnI CCWGG 2 cut(s) 12, 510
AluBI AGCT 5 cut(s) 339, 466, 497, 538, 593
AluI AGCT 5 cut(s) 339, 466, 497, 538, 593
Alw26I GTCTC 1 cut(s) 656
AlwI GGATC 4 cut(s) 194, 269, 282, 512
ApeKI GCWGC 2 cut(s) 463, 749
ApoI RAATTY 1 cut(s) 196
Asp700I GAANNNNTTC 1 cut(s) 34
AspLEI GCGC 3 cut(s) 148, 154, 754
AspS9I GGNCC 1 cut(s) 382
AsuHPI GGTGA 2 cut(s) 83, 697
AsuNHI GCTAGC 1 cut(s) 148
AvaII GGWCC 1 cut(s) 382
AxyI CCTNAGG 1 cut(s) 567
BamHI GGATCC 1 cut(s) 274
BauI CACGAG 1 cut(s) 419
BbsI GAAGAC 1 cut(s) 367
BbvI GCAGC 2 cut(s) 475, 761
BccI CCATC 6 cut(s) 161, 226, 324, 451, 509, 702
BceAI ACGGC 1 cut(s) 50
BcgI CGANNNNNNTGC 2 cut(s) 703, 737
BciT130I CCWGG 2 cut(s) 14, 512
BcoDI GTCTC 1 cut(s) 656
BfaI CTAG 3 cut(s) 39, 149, 696
BfoI RGCGCY 2 cut(s) 149, 755
BglII AGATCT 1 cut(s) 692
BisI GCNGC 2 cut(s) 464, 750
BlpI GCTNAGC 1 cut(s) 335
BlsI GCNGC 2 cut(s) 465, 751
Bme1390I CCNGG 2 cut(s) 14, 512
Bme18I GGWCC 1 cut(s) 382
BmgBI CACGTC 1 cut(s) 246
BmgT120I GGNCC 1 cut(s) 382
BmiI GGNNCC 1 cut(s) 276
BmrFI CCNGG 2 cut(s) 14, 512
BmtI GCTAGC 1 cut(s) 152
BpiI GAAGAC 1 cut(s) 367
BpmI CTGGAG 1 cut(s) 426
Bpu1102I GCTNAGC 1 cut(s) 335
BpuEI CTTGAG 2 cut(s) 477, 518
Bsa29I ATCGAT 1 cut(s) 189
BsaAI YACGTR 1 cut(s) 542
BsaJI CCNNGG 2 cut(s) 13, 66
BsaXI ACNNNNNCTCC 4 cut(s) 162, 192, 263, 293
Bse118I RCCGGY 2 cut(s) 682, 754
Bse21I CCTNAGG 1 cut(s) 567
BseBI CCWGG 2 cut(s) 14, 512
BseCI ATCGAT 1 cut(s) 189
BseDI CCNNGG 2 cut(s) 13, 66
BseGI GGATG 2 cut(s) 335, 520
BseMII CTCAG 2 cut(s) 326, 581
BseRI GAGGAG 1 cut(s) 703
BseXI GCAGC 2 cut(s) 475, 761
BseYI CCCAGC 1 cut(s) 56
BshVI ATCGAT 1 cut(s) 189
BsiSI CCGG 2 cut(s) 683, 755
BslFI GGGAC 1 cut(s) 541
BsmAI GTCTC 1 cut(s) 656
BsmBI CGTCTC 1 cut(s) 656
BsmFI GGGAC 1 cut(s) 541
Bsp143I GATC 4 cut(s) 186, 274, 504, 692
Bsp1720I GCTNAGC 1 cut(s) 335
BspACI CCGC 3 cut(s) 203, 371, 747
BspCNI CTCAG 2 cut(s) 327, 580
BspDI ATCGAT 1 cut(s) 189
BspLI GGNNCC 1 cut(s) 276
BspOI GCTAGC 1 cut(s) 152
BspPI GGATC 4 cut(s) 194, 269, 282, 512
BsrFI RCCGGY 2 cut(s) 682, 754
BssAI RCCGGY 2 cut(s) 682, 754
BssECI CCNNGG 2 cut(s) 13, 66
BssMI GATC 4 cut(s) 186, 274, 504, 692
BssSI CACGAG 1 cut(s) 419
Bst2BI CACGAG 1 cut(s) 419
Bst2UI CCWGG 2 cut(s) 14, 512
Bst4CI ACNGT 2 cut(s) 82, 163
Bst6I CTCTTC 1 cut(s) 774
BstBAI YACGTR 1 cut(s) 542
BstC8I GCNNGC 3 cut(s) 63, 150, 156
BstDEI CTNAG 2 cut(s) 335, 567
BstDSI CCRYGG 1 cut(s) 66
BstF5I GGATG 2 cut(s) 335, 520
BstH2I RGCGCY 2 cut(s) 149, 755
BstHHI GCGC 3 cut(s) 148, 154, 754
BstKTI GATC 4 cut(s) 189, 277, 507, 695
BstMAI GTCTC 1 cut(s) 656
BstMBI GATC 4 cut(s) 186, 274, 504, 692
BstMWI GCNNNNNNNGC 2 cut(s) 62, 443
BstNI CCWGG 2 cut(s) 14, 512
BstNSI RCATGY 1 cut(s) 675
BstSCI CCNGG 2 cut(s) 12, 510
BstV1I GCAGC 2 cut(s) 475, 761
BstV2I GAAGAC 1 cut(s) 367
BstX2I RGATCY 2 cut(s) 274, 692
BstYI RGATCY 2 cut(s) 274, 692
Bsu15I ATCGAT 1 cut(s) 189
Bsu36I CCTNAGG 1 cut(s) 567
BsuTUI ATCGAT 1 cut(s) 189
BtgI CCRYGG 1 cut(s) 66
BtgZI GCGATG 1 cut(s) 461
BtrI CACGTC 1 cut(s) 246
BtsCI GGATG 2 cut(s) 335, 520
BtsIMutI CAGTG 1 cut(s) 350
Cac8I GCNNGC 3 cut(s) 63, 150, 156
CfoI GCGC 3 cut(s) 148, 154, 754
Cfr10I RCCGGY 2 cut(s) 682, 754
Cfr13I GGNCC 1 cut(s) 382
ClaI ATCGAT 1 cut(s) 189
CseI GACGC 1 cut(s) 364
CviAII CATG 2 cut(s) 379, 672
DdeI CTNAG 2 cut(s) 335, 567
DpnI GATC 4 cut(s) 188, 276, 506, 694
DpnII GATC 4 cut(s) 186, 274, 504, 692
Eam1104I CTCTTC 1 cut(s) 774
EarI CTCTTC 1 cut(s) 774
Eco47I GGWCC 1 cut(s) 382
Eco57I CTGAAG 1 cut(s) 519
Eco81I CCTNAGG 1 cut(s) 567
EcoRII CCWGG 2 cut(s) 12, 510
Esp3I CGTCTC 1 cut(s) 656
FaeI CATG 2 cut(s) 382, 675
FaqI GGGAC 1 cut(s) 541
FatI CATG 2 cut(s) 378, 671
FauI CCCGC 1 cut(s) 754
Fnu4HI GCNGC 2 cut(s) 464, 750
FokI GGATG 2 cut(s) 342, 527
Fsp4HI GCNGC 2 cut(s) 464, 750
FspBI CTAG 3 cut(s) 39, 149, 696
GlaI GCGC 3 cut(s) 147, 153, 753
GluI GCNGC 2 cut(s) 464, 750
GsaI CCCAGC 1 cut(s) 60
GsuI CTGGAG 1 cut(s) 426
HaeII RGCGCY 2 cut(s) 149, 755
HapII CCGG 2 cut(s) 683, 755
HgaI GACGC 1 cut(s) 364
HhaI GCGC 3 cut(s) 148, 154, 754
Hin1II CATG 2 cut(s) 382, 675
Hin6I GCGC 3 cut(s) 146, 152, 752
HinP1I GCGC 3 cut(s) 146, 152, 752
HinfI GANTC 2 cut(s) 119, 171
HpaII CCGG 2 cut(s) 683, 755
HphI GGTGA 2 cut(s) 83, 697
Hpy166II GTNNAC 2 cut(s) 414, 669
Hpy188I TCNGA 1 cut(s) 480
Hpy188III TCNNGA 2 cut(s) 419, 764
Hpy8I GTNNAC 2 cut(s) 414, 669
HpyAV CCTTC 5 cut(s) 176, 205, 260, 398, 494
HpyCH4III ACNGT 2 cut(s) 82, 163
HpyCH4IV ACGT 4 cut(s) 245, 522, 541, 665
HpyCH4V TGCA 2 cut(s) 324, 350
HpyF10VI GCNNNNNNNGC 2 cut(s) 62, 443
HpyF3I CTNAG 2 cut(s) 335, 567
HpySE526I ACGT 4 cut(s) 245, 522, 541, 665
Hsp92II CATG 2 cut(s) 382, 675
HspAI GCGC 3 cut(s) 146, 152, 752
Kzo9I GATC 4 cut(s) 186, 274, 504, 692
LmnI GCTCC 1 cut(s) 460
Lsp1109I GCAGC 2 cut(s) 475, 761
MaeI CTAG 3 cut(s) 39, 149, 696
MaeII ACGT 4 cut(s) 245, 522, 541, 665
MaeIII GTNAC 2 cut(s) 91, 216
MalI GATC 4 cut(s) 188, 276, 506, 694
MboI GATC 4 cut(s) 186, 274, 504, 692
MboII GAAGA 5 cut(s) 367, 521, 729, 791, 796
MflI RGATCY 2 cut(s) 274, 692
MluCI AATT 1 cut(s) 196
MlyI GAGTC 1 cut(s) 180
MnlI CCTC 7 cut(s) 46, 265, 395, 415, 450, 576, 681
MroXI GAANNNNTTC 1 cut(s) 34
MseI TTAA 3 cut(s) 114, 426, 633
MspI CCGG 2 cut(s) 683, 755
MspR9I CCNGG 2 cut(s) 14, 512
MvaI CCWGG 2 cut(s) 14, 512
MwoI GCNNNNNNNGC 2 cut(s) 62, 443
NdeII GATC 4 cut(s) 186, 274, 504, 692
NheI GCTAGC 1 cut(s) 148
NlaIII CATG 2 cut(s) 382, 675
NlaIV GGNNCC 1 cut(s) 276
NspI RCATGY 1 cut(s) 675
PciI ACATGT 1 cut(s) 671
PdmI GAANNNNTTC 1 cut(s) 34
PfeI GAWTC 1 cut(s) 119
PfoI TCCNGGA 1 cut(s) 510
PkrI GCNGC 2 cut(s) 465, 751
PleI GAGTC 1 cut(s) 179
PpsI GAGTC 1 cut(s) 179
Ppu21I YACGTR 1 cut(s) 542
PscI ACATGT 1 cut(s) 671
Psp1406I AACGTT 1 cut(s) 522
Psp6I CCWGG 2 cut(s) 12, 510
PspFI CCCAGC 1 cut(s) 56
PspGI CCWGG 2 cut(s) 12, 510
PspN4I GGNNCC 1 cut(s) 276
PspPI GGNCC 1 cut(s) 382
PsuI RGATCY 2 cut(s) 274, 692
SaqAI TTAA 3 cut(s) 114, 426, 633
SatI GCNGC 2 cut(s) 464, 750
Sau3AI GATC 4 cut(s) 186, 274, 504, 692
Sau96I GGNCC 1 cut(s) 382
SchI GAGTC 1 cut(s) 180
ScrFI CCNGG 2 cut(s) 14, 512
SgrAI CRCCGGYG 1 cut(s) 682
SinI GGWCC 1 cut(s) 382
SmlI CTYRAG 2 cut(s) 492, 533
SmoI CTYRAG 2 cut(s) 492, 533
Sse9I AATT 1 cut(s) 196
SsiI CCGC 3 cut(s) 203, 371, 747
SspMI CTAG 3 cut(s) 39, 149, 696
StyD4I CCNGG 2 cut(s) 12, 510
TaaI ACNGT 2 cut(s) 82, 163
TaiI ACGT 4 cut(s) 248, 525, 544, 668
TaqI TCGA 2 cut(s) 189, 391
TasI AATT 1 cut(s) 196
TfiI GAWTC 1 cut(s) 119
Tru1I TTAA 3 cut(s) 114, 426, 633
Tru9I TTAA 3 cut(s) 114, 426, 633
TscAI CASTG 1 cut(s) 357
TseI GCWGC 2 cut(s) 463, 749
TspDTI ATGAA 5 cut(s) 12, 150, 224, 367, 464
TspGWI ACGGA 1 cut(s) 267
TspRI CASTG 1 cut(s) 357
VpaK11BI GGWCC 1 cut(s) 382
XapI RAATTY 1 cut(s) 196
XceI RCATGY 1 cut(s) 675
XmnI GAANNNNTTC 1 cut(s) 34
XspI CTAG 3 cut(s) 39, 149, 696
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.