Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0012737

Physical Location & Seq

Genomic Coordinates Reverse (-)

21000481 .. 21001604

Gene Structure 1124 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 336 bp

ATGGACTCACCAAAGAAACCGGCGAAAGGCGGTAGCAACTCACTCATGGAGAATCTGCTTGGTCTTCTCCGAATCCACGTCAAGCGCGGTGTTAATCTCGCCGTCCGCGACGTCCGTAGCAGCGATCCCTACGCCGTCATCAAGATGGGTAAACAGAAACTGAAGACTCGTGTAATTAAAAAGGATGTTAACCCAGAGTGGAATGAAGATCTTACTCTCTCTGTTACAGACCCCAGTATACCTATCAAGCTGACTGTGTTTGACCATGACACATTCAGCAAGGATGACAAAATGGGAGATGCAGAATTCGGCATATCGCCTTATTTAGAGGCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002682 GO:0002684 GO:0002831 GO:0002833 GO:0003674 GO:0005096 GO:0005488 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0006950 GO:0006970 GO:0008047 GO:0008150 GO:0008289 GO:0009628 GO:0009651 GO:0009787 GO:0009789 GO:0009966 GO:0009967 GO:0010646 GO:0010647 GO:0016020 GO:0023051 GO:0023056 GO:0030234 GO:0030695 GO:0031347 GO:0031349 GO:0032101 GO:0032103 GO:0043085 GO:0043087 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043547 GO:0043900 GO:0043902 GO:0044093 GO:0044424 GO:0044444 GO:0044464 GO:0045088 GO:0045089 GO:0047484 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051336 GO:0051345 GO:0060589 GO:0065007 GO:0065009 GO:0071944 GO:0080134 GO:0098772 GO:1900424 GO:1900426 GO:1901000 GO:1901002 GO:1901419 GO:1901421 GO:1902477 GO:1902479 GO:1905957 GO:1905959

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

112

Amino Acids

12.37

Weight (kDa)

8.86

Isoelectric Point (pI)

39.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
C2	PF00168	21 - 107	4.3e-25	C2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012737)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G17980
fragaria_vesca	FvH4_5g17320 FvH4_5g17320
malus_domestica	MD14G1236400.v1.1
prunus_persica	Prupe.5G233300_v2.0.a1 Prupe.5G233300_v2.0.a1 Prupe.5G233300_v2.0.a1
pyrus_communis	pycom14g19740
rosa_chinensis	RchiOBHm_Chr7g0178451
rosa_laevigata	RLG00000005447
rosa_multiflora	Rmu_sc0017248.1_g000001
rosa_roxburghii	Rroxscaffold_3G00274910
rosa_rugosa	Rorug06G0417100
rosa_samantha	Rh7AG015600 Rh7CG015900 Rh7DG015500
rosa_wichuraiana	Rw0G010160 Rw7G001230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	114
AccI	GTMKAC	1 cut(s)	238
AccII	CGCG	2 cut(s)	87, 108
AciI	CCGC	3 cut(s)	30, 87, 106
AclWI	GGATC	1 cut(s)	119
AcsI	RAATTY	1 cut(s)	305
AcuI	CTGAAG	1 cut(s)	182
AcyI	GRCGYC	1 cut(s)	111
AfiI	CCNNNNNNNGG	1 cut(s)	26
AjiI	CACGTC	1 cut(s)	79
AluBI	AGCT	1 cut(s)	250
AluI	AGCT	1 cut(s)	250
AlwI	GGATC	1 cut(s)	119
AlwNI	CAGNNNCTG	1 cut(s)	160
ApeKI	GCWGC	1 cut(s)	120
ApoI	RAATTY	1 cut(s)	305
AspLEI	GCGC	1 cut(s)	87
BauI	CACGAG	1 cut(s)	168
BbsI	GAAGAC	2 cut(s)	56, 170
BbvI	GCAGC	1 cut(s)	132
BccI	CCATC	1 cut(s)	139
BceAI	ACGGC	2 cut(s)	86, 119
BglII	AGATCT	1 cut(s)	208
BisI	GCNGC	1 cut(s)	121
BlsI	GCNGC	1 cut(s)	122
BmgBI	CACGTC	1 cut(s)	79
BmrI	ACTGGG	1 cut(s)	228
BmsI	GCATC	1 cut(s)	289
BmuI	ACTGGG	1 cut(s)	228
BpiI	GAAGAC	2 cut(s)	56, 170
BsaHI	GRCGYC	1 cut(s)	111
Bsc4I	CCNNNNNNNGG	1 cut(s)	26
Bse118I	RCCGGY	1 cut(s)	19
Bse1I	ACTGG	1 cut(s)	234
BseGI	GGATG	2 cut(s)	190, 289
BseLI	CCNNNNNNNGG	1 cut(s)	26
BseNI	ACTGG	1 cut(s)	234
BseXI	GCAGC	1 cut(s)	132
Bsh1236I	CGCG	2 cut(s)	87, 108
BsiSI	CCGG	1 cut(s)	20
BslI	CCNNNNNNNGG	1 cut(s)	26
Bsp143I	GATC	2 cut(s)	124, 208
BspACI	CCGC	3 cut(s)	30, 87, 106
BspFNI	CGCG	2 cut(s)	87, 108
BspPI	GGATC	1 cut(s)	119
BsrFI	RCCGGY	1 cut(s)	19
BsrI	ACTGG	1 cut(s)	234
BssAI	RCCGGY	1 cut(s)	19
BssMI	GATC	2 cut(s)	124, 208
BssNAI	GTATAC	1 cut(s)	239
BssNI	GRCGYC	1 cut(s)	111
BssSI	CACGAG	1 cut(s)	168
Bst1107I	GTATAC	1 cut(s)	239
Bst2BI	CACGAG	1 cut(s)	168
Bst4CI	ACNGT	1 cut(s)	256
BstACI	GRCGYC	1 cut(s)	111
BstF5I	GGATG	2 cut(s)	190, 289
BstFNI	CGCG	2 cut(s)	87, 108
BstHHI	GCGC	1 cut(s)	87
BstKTI	GATC	2 cut(s)	127, 211
BstMBI	GATC	2 cut(s)	124, 208
BstUI	CGCG	2 cut(s)	87, 108
BstV1I	GCAGC	1 cut(s)	132
BstV2I	GAAGAC	2 cut(s)	56, 170
BstX2I	RGATCY	1 cut(s)	208
BstYI	RGATCY	1 cut(s)	208
BstZ17I	GTATAC	1 cut(s)	239
BtrI	CACGTC	1 cut(s)	79
BtsCI	GGATG	2 cut(s)	190, 289
CaiI	CAGNNNCTG	1 cut(s)	160
CfoI	GCGC	1 cut(s)	87
Cfr10I	RCCGGY	1 cut(s)	19
CviAII	CATG	2 cut(s)	46, 266
CviJI	RGCY	1 cut(s)	250
CviKI_1	RGCY	1 cut(s)	250
DpnI	GATC	2 cut(s)	126, 210
DpnII	GATC	2 cut(s)	124, 208
Eco57I	CTGAAG	1 cut(s)	182
EcoRI	GAATTC	1 cut(s)	305
FaeI	CATG	2 cut(s)	49, 269
FaiI	YATR	4 cut(s)	47, 239, 267, 314
FatI	CATG	2 cut(s)	45, 265
FblI	GTMKAC	1 cut(s)	238
Fnu4HI	GCNGC	1 cut(s)	121
FokI	GGATG	2 cut(s)	197, 296
Fsp4HI	GCNGC	1 cut(s)	121
GlaI	GCGC	1 cut(s)	86
GluI	GCNGC	1 cut(s)	121
HapII	CCGG	1 cut(s)	20
HhaI	GCGC	1 cut(s)	87
Hin1I	GRCGYC	1 cut(s)	111
Hin1II	CATG	2 cut(s)	49, 269
Hin6I	GCGC	1 cut(s)	85
HinP1I	GCGC	1 cut(s)	85
HincII	GTYRAC	1 cut(s)	190
HindII	GTYRAC	1 cut(s)	190
HinfI	GANTC	4 cut(s)	5, 52, 72, 166
HpaI	GTTAAC	1 cut(s)	190
HpaII	CCGG	1 cut(s)	20
Hpy166II	GTNNAC	3 cut(s)	152, 190, 239
Hpy188I	TCNGA	1 cut(s)	71
Hpy188III	TCNNGA	1 cut(s)	142
Hpy8I	GTNNAC	3 cut(s)	152, 190, 239
Hpy99I	CGWCG	1 cut(s)	113
HpyCH4III	ACNGT	1 cut(s)	256
HpyCH4IV	ACGT	2 cut(s)	78, 111
HpyCH4V	TGCA	1 cut(s)	302
HpySE526I	ACGT	2 cut(s)	78, 111
Hsp92I	GRCGYC	1 cut(s)	111
Hsp92II	CATG	2 cut(s)	49, 269
HspAI	GCGC	1 cut(s)	85
KspAI	GTTAAC	1 cut(s)	190
Kzo9I	GATC	2 cut(s)	124, 208
LpnPI	CCDG	3 cut(s)	33, 207, 247
Lsp1109I	GCAGC	1 cut(s)	132
LweI	GCATC	1 cut(s)	289
MaeII	ACGT	2 cut(s)	78, 111
MaeIII	GTNAC	1 cut(s)	223
MalI	GATC	2 cut(s)	126, 210
MboI	GATC	2 cut(s)	124, 208
MboII	GAAGA	3 cut(s)	56, 175, 218
MflI	RGATCY	1 cut(s)	208
MluCI	AATT	2 cut(s)	174, 305
MlyI	GAGTC	1 cut(s)	160
MnlI	CCTC	1 cut(s)	322
MseI	TTAA	3 cut(s)	93, 177, 189
MslI	CAYNNNNRTG	1 cut(s)	143
MspI	CCGG	1 cut(s)	20
MvnI	CGCG	2 cut(s)	87, 108
NdeII	GATC	2 cut(s)	124, 208
NlaIII	CATG	2 cut(s)	49, 269
PcsI	WCGNNNNNNNCGW	1 cut(s)	105
PfeI	GAWTC	2 cut(s)	52, 72
PkrI	GCNGC	1 cut(s)	122
PleI	GAGTC	1 cut(s)	160
PpsI	GAGTC	1 cut(s)	160
PstNI	CAGNNNCTG	1 cut(s)	160
PsuI	RGATCY	1 cut(s)	208
RseI	CAYNNNNRTG	1 cut(s)	143
SaqAI	TTAA	3 cut(s)	93, 177, 189
SatI	GCNGC	1 cut(s)	121
Sau3AI	GATC	2 cut(s)	124, 208
SchI	GAGTC	1 cut(s)	160
SetI	ASST	4 cut(s)	81, 114, 244, 252
SfaNI	GCATC	1 cut(s)	289
SmiMI	CAYNNNNRTG	1 cut(s)	143
Sse9I	AATT	2 cut(s)	174, 305
SsiI	CCGC	3 cut(s)	30, 87, 106
TaaI	ACNGT	1 cut(s)	256
TaiI	ACGT	2 cut(s)	81, 114
TasI	AATT	2 cut(s)	174, 305
TfiI	GAWTC	2 cut(s)	52, 72
Tru1I	TTAA	3 cut(s)	93, 177, 189
Tru9I	TTAA	3 cut(s)	93, 177, 189
TseI	GCWGC	1 cut(s)	120
TspDTI	ATGAA	1 cut(s)	219
TspGWI	ACGGA	1 cut(s)	104
XapI	RAATTY	1 cut(s)	305
XmiI	GTMKAC	1 cut(s)	238
ZraI	GACGTC	1 cut(s)	112

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.