Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0010321

Physical Location & Seq

Genomic Coordinates Reverse (-)

431869 .. 434908

Gene Structure 3040 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g00780.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 822 bp

ATGGATGTCCTTTGCCAGATTGGTTTAGATGGTATCCGTATGATCGATCCTGCTACCAGTCGGACATTGAGAATATATCCCCTCGAGACCGTTACAAGATGTGAAAAAACCGACTCATCTACTTTTGCCTTTTGGTCAAAGAGCTCTGTGGATATTGAGCCAAGGCGTATTAGATTGCAGTCAAATAGTTACACTACCAACACCCTTTTGGATACGGTGACTGCTGCAACTGTACAGCTTAAGGAAATGGGTGGAAGAATAAAGCCTACAGAATCCATAAGGCCAAGTGAACAGTCTACAGAGAGAAAGAAAGGATTAACCGATTGGATGAACATTATTAAACCGGGAAATGAGGAGAAAGATCATTGGGTCCCCGATGAAGCAGTTACAAAATGCACTGCGTGTCGGACAGATTTTGGGGCTTTTAACCGCAGGCATCACTGTCGGAACTGTGGAGACATTTTCTGCGACAAGTGTACCCATGGCAGAATTGCCTTAACTGCTGAGGAGAATGCTCCGCAGGTTCGAGTTTGTGACCGTTGCATGGCTGAAGTGACTCAGAGGCTCAGTAATGCTAAGGAAGCATCTAGTAAACCTGCAGGACTTCATAGTCACGACGATCTTGCCAAGAAGCTTCAGGAGGAGTTGGAAAGGAATCGCAAGGAATCTTCAGGTTCAAAGTCTGATGGATCTGGAAGGAGAATGAGAGAAGTTGCCTGTCCTACATGTACGGTCCACTTGCAGGTTCAAGTTCCCAGCACGGGGTCGGAGACCATTGAGTGTGGGGTTTGCCAGAATCCATTTCTTGTGAGTGCTCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FYVE PTB

Protein Analysis

274

Amino Acids

30.47

Weight (kDa)

7.91

Isoelectric Point (pI)

54.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010321)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G20110
fragaria_vesca	FvH4_2g38130 FvH4_2g38130 FvH4_2g38130
malus_domestica	MD08G1009900.v1.1 MD15G1009800.v1.1
prunus_persica	Prupe.1G362200_v2.0.a1 Prupe.1G362200_v2.0.a1 Prupe.1G362200_v2.0.a1
pyrus_communis	pycom15g00780
rosa_chinensis	RchiOBHm_Chr6g0303371
rosa_laevigata	RLG00000011089
rosa_multiflora	Rmu_ssc0000114.1_g000060
rosa_roxburghii	Rroxscaffold_7G00164840
rosa_rugosa	Rorug06G0320900 Rorug06G0321000
rosa_samantha	Rh6AG435200 Rh6BG468000 Rh6CG447200 Rh6DG434000
rosa_wichuraiana	Rw6G037680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	609
Acc36I	ACCTGC	3 cut(s)	511, 604, 733
AccI	GTMKAC	1 cut(s)	296
AciI	CCGC	2 cut(s)	430, 518
AclWI	GGATC	2 cut(s)	41, 697
AcuI	CTGAAG	3 cut(s)	570, 620, 654
AdeI	CACNNNGTG	1 cut(s)	402
AfaI	GTAC	3 cut(s)	234, 478, 730
AfiI	CCNNNNNNNGG	4 cut(s)	544, 742, 761, 762
AflII	CTTAAG	1 cut(s)	239
AflIII	ACRYGT	1 cut(s)	725
AgsI	TTSAA	2 cut(s)	678, 749
AluBI	AGCT	3 cut(s)	144, 238, 634
AluI	AGCT	3 cut(s)	144, 238, 634
Alw21I	GWGCWC	2 cut(s)	146, 817
Alw26I	GTCTC	3 cut(s)	80, 450, 764
AlwI	GGATC	2 cut(s)	41, 697
Ama87I	CYCGRG	1 cut(s)	83
AoxI	GGCC	1 cut(s)	281
ApeKI	GCWGC	1 cut(s)	224
AspS9I	GGNCC	2 cut(s)	370, 733
AsuC2I	CCSGG	1 cut(s)	345
AsuHPI	GGTGA	1 cut(s)	229
AvaI	CYCGRG	1 cut(s)	83
AvaII	GGWCC	2 cut(s)	370, 733
BaeI	ACNNNNGTAYC	2 cut(s)	460, 493
BanII	GRGCYC	1 cut(s)	146
Bbv12I	GWGCWC	2 cut(s)	146, 817
BbvCI	CCTCAGC	1 cut(s)	504
BbvI	GCAGC	1 cut(s)	211
BccI	CCATC	2 cut(s)	23, 680
BcgI	CGANNNNNNTGC	4 cut(s)	425, 459, 605, 639
BciVI	GTATCC	2 cut(s)	44, 205
BcnI	CCSGG	1 cut(s)	345
BcoDI	GTCTC	3 cut(s)	80, 450, 764
BfaI	CTAG	1 cut(s)	588
BfmI	CTRYAG	3 cut(s)	267, 297, 597
BfrI	CTTAAG	1 cut(s)	239
BfuAI	ACCTGC	3 cut(s)	511, 604, 733
BfuI	GTATCC	2 cut(s)	44, 205
BisI	GCNGC	1 cut(s)	225
BlsI	GCNGC	1 cut(s)	226
Bme1390I	CCNGG	1 cut(s)	345
Bme18I	GGWCC	2 cut(s)	370, 733
BmeT110I	CYCGRG	1 cut(s)	83
BmgT120I	GGNCC	2 cut(s)	370, 733
BmiI	GGNNCC	2 cut(s)	371, 372
BmrFI	CCNGG	1 cut(s)	345
BmsI	GCATC	2 cut(s)	445, 593
Bpu10I	CCTNAGC	2 cut(s)	504, 576
BpuMI	CCSGG	1 cut(s)	345
Bsa29I	ATCGAT	1 cut(s)	45
BsaI	GGTCTC	2 cut(s)	80, 764
BsaJI	CCNNGG	2 cut(s)	161, 481
Bsc4I	CCNNNNNNNGG	4 cut(s)	544, 742, 761, 762
Bse1I	ACTGG	1 cut(s)	57
BseCI	ATCGAT	1 cut(s)	45
BseDI	CCNNGG	2 cut(s)	161, 481
BseGI	GGATG	2 cut(s)	10, 333
BseLI	CCNNNNNNNGG	4 cut(s)	544, 742, 761, 762
BseMII	CTCAG	3 cut(s)	495, 572, 580
BseNI	ACTGG	1 cut(s)	57
BseRI	GAGGAG	3 cut(s)	368, 521, 656
BseXI	GCAGC	1 cut(s)	211
BseYI	CCCAGC	1 cut(s)	755
BshFI	GGCC	1 cut(s)	283
BshVI	ATCGAT	1 cut(s)	45
BsiHKAI	GWGCWC	2 cut(s)	146, 817
BsiHKCI	CYCGRG	1 cut(s)	83
BsiSI	CCGG	1 cut(s)	344
BslFI	GGGAC	1 cut(s)	356
BslI	CCNNNNNNNGG	4 cut(s)	544, 742, 761, 762
BsmAI	GTCTC	3 cut(s)	80, 450, 764
BsmFI	GGGAC	1 cut(s)	356
BsmI	GAATGC	1 cut(s)	517
BsnI	GGCC	1 cut(s)	283
Bso31I	GGTCTC	2 cut(s)	80, 764
BsoBI	CYCGRG	1 cut(s)	83
Bsp1286I	GDGCHC	2 cut(s)	146, 817
Bsp1407I	TGTACA	1 cut(s)	232
Bsp143I	GATC	5 cut(s)	42, 46, 361, 619, 689
Bsp19I	CCATGG	1 cut(s)	481
BspACI	CCGC	2 cut(s)	430, 518
BspANI	GGCC	1 cut(s)	283
BspCNI	CTCAG	3 cut(s)	496, 571, 579
BspDI	ATCGAT	1 cut(s)	45
BspLI	GGNNCC	2 cut(s)	371, 372
BspMAI	CTGCAG	1 cut(s)	601
BspMI	ACCTGC	3 cut(s)	511, 604, 733
BspPI	GGATC	2 cut(s)	41, 697
BspTI	CTTAAG	1 cut(s)	239
BspTNI	GGTCTC	2 cut(s)	80, 764
BsrGI	TGTACA	1 cut(s)	232
BsrI	ACTGG	1 cut(s)	57
BssECI	CCNNGG	2 cut(s)	161, 481
BssMI	GATC	5 cut(s)	42, 46, 361, 619, 689
BssT1I	CCWWGG	2 cut(s)	161, 481
Bst4CI	ACNGT	8 cut(s)	91, 217, 232, 294, 443, 452, 539, 733
BstAFI	CTTAAG	1 cut(s)	239
BstAUI	TGTACA	1 cut(s)	232
BstC8I	GCNNGC	1 cut(s)	434
BstDEI	CTNAG	4 cut(s)	504, 558, 566, 576
BstDSI	CCRYGG	1 cut(s)	481
BstF5I	GGATG	2 cut(s)	10, 333
BstKTI	GATC	5 cut(s)	45, 49, 364, 622, 692
BstMAI	GTCTC	3 cut(s)	80, 450, 764
BstMBI	GATC	5 cut(s)	42, 46, 361, 619, 689
BstMWI	GCNNNNNNNGC	2 cut(s)	500, 581
BstNSI	RCATGY	1 cut(s)	729
BstSCI	CCNGG	1 cut(s)	343
BstSFI	CTRYAG	3 cut(s)	267, 297, 597
BstV1I	GCAGC	1 cut(s)	211
BstX2I	RGATCY	1 cut(s)	689
BstYI	RGATCY	1 cut(s)	689
Bsu15I	ATCGAT	1 cut(s)	45
BsuI	GTATCC	2 cut(s)	44, 205
BsuRI	GGCC	1 cut(s)	283
BsuTUI	ATCGAT	1 cut(s)	45
BtgI	CCRYGG	1 cut(s)	481
BtsCI	GGATG	2 cut(s)	10, 333
BtsI	GCAGTG	1 cut(s)	396
BtsIMutI	CAGTG	2 cut(s)	396, 439
BveI	ACCTGC	3 cut(s)	511, 604, 733
Cac8I	GCNNGC	1 cut(s)	434
Cfr13I	GGNCC	2 cut(s)	370, 733
ClaI	ATCGAT	1 cut(s)	45
Csp6I	GTAC	3 cut(s)	233, 477, 729
CviAII	CATG	3 cut(s)	482, 544, 726
CviJI	RGCY	9 cut(s)	144, 160, 238, 265, 283, 422, 548, 565, 634
CviKI_1	RGCY	9 cut(s)	144, 160, 238, 265, 283, 422, 548, 565, 634
CviQI	GTAC	3 cut(s)	233, 477, 729
DdeI	CTNAG	4 cut(s)	504, 558, 566, 576
DpnI	GATC	5 cut(s)	44, 48, 363, 621, 691
DpnII	GATC	5 cut(s)	42, 46, 361, 619, 689
DraIII	CACNNNGTG	1 cut(s)	402
DrdI	GACNNNNNNGTC	1 cut(s)	609
DseDI	GACNNNNNNGTC	1 cut(s)	609
Ecl136II	GAGCTC	1 cut(s)	144
Eco130I	CCWWGG	2 cut(s)	161, 481
Eco24I	GRGCYC	1 cut(s)	146
Eco31I	GGTCTC	2 cut(s)	80, 764
Eco47I	GGWCC	2 cut(s)	370, 733
Eco53kI	GAGCTC	1 cut(s)	144
Eco57I	CTGAAG	3 cut(s)	570, 620, 654
Eco88I	CYCGRG	1 cut(s)	83
EcoICRI	GAGCTC	1 cut(s)	144
EcoO109I	RGGNCCY	1 cut(s)	370
EcoT14I	CCWWGG	2 cut(s)	161, 481
EcoT38I	GRGCYC	1 cut(s)	146
ErhI	CCWWGG	2 cut(s)	161, 481
FaeI	CATG	3 cut(s)	485, 547, 729
FaiI	YATR	7 cut(s)	41, 76, 278, 483, 545, 609, 727
FaqI	GGGAC	1 cut(s)	356
FatI	CATG	3 cut(s)	481, 543, 725
FblI	GTMKAC	1 cut(s)	296
Fnu4HI	GCNGC	1 cut(s)	225
FokI	GGATG	2 cut(s)	17, 340
FriOI	GRGCYC	1 cut(s)	146
Fsp4HI	GCNGC	1 cut(s)	225
FspBI	CTAG	1 cut(s)	588
GluI	GCNGC	1 cut(s)	225
GsaI	CCCAGC	1 cut(s)	759
HaeIII	GGCC	1 cut(s)	283
HapII	CCGG	1 cut(s)	344
Hin1II	CATG	3 cut(s)	485, 547, 729
HindIII	AAGCTT	1 cut(s)	632
HinfI	GANTC	6 cut(s)	113, 272, 556, 655, 665, 796
HpaII	CCGG	1 cut(s)	344
HphI	GGTGA	1 cut(s)	229
Hpy166II	GTNNAC	5 cut(s)	290, 297, 477, 593, 736
Hpy188I	TCNGA	6 cut(s)	63, 408, 447, 561, 685, 769
Hpy188III	TCNNGA	4 cut(s)	85, 614, 638, 693
Hpy8I	GTNNAC	5 cut(s)	290, 297, 477, 593, 736
Hpy99I	CGWCG	1 cut(s)	620
HpyAV	CCTTC	1 cut(s)	690
HpyCH4III	ACNGT	8 cut(s)	91, 217, 232, 294, 443, 452, 539, 733
HpyCH4V	TGCA	6 cut(s)	178, 227, 396, 543, 599, 742
HpyF10VI	GCNNNNNNNGC	2 cut(s)	500, 581
HpyF3I	CTNAG	4 cut(s)	504, 558, 566, 576
Hsp92II	CATG	3 cut(s)	485, 547, 729
KflI	GGGWCCC	1 cut(s)	370
Kzo9I	GATC	5 cut(s)	42, 46, 361, 619, 689
LmnI	GCTCC	1 cut(s)	520
Lsp1109I	GCAGC	1 cut(s)	211
LweI	GCATC	2 cut(s)	445, 593
MaeI	CTAG	1 cut(s)	588
MaeIII	GTNAC	7 cut(s)	91, 188, 217, 385, 533, 553, 611
MalI	GATC	5 cut(s)	44, 48, 363, 621, 691
MboI	GATC	5 cut(s)	42, 46, 361, 619, 689
MboII	GAAGA	2 cut(s)	267, 660
MflI	RGATCY	1 cut(s)	689
MhlI	GDGCHC	2 cut(s)	146, 817
MluCI	AATT	1 cut(s)	489
MlyI	GAGTC	2 cut(s)	107, 550
MmeI	TCCRAC	5 cut(s)	41, 386, 425, 627, 747
MnlI	CCTC	5 cut(s)	92, 346, 499, 555, 634
MseI	TTAA	5 cut(s)	240, 317, 339, 426, 497
MspCI	CTTAAG	1 cut(s)	239
MspI	CCGG	1 cut(s)	344
MspR9I	CCNGG	1 cut(s)	345
Mva1269I	GAATGC	1 cut(s)	517
MwoI	GCNNNNNNNGC	2 cut(s)	500, 581
NciI	CCSGG	1 cut(s)	345
NcoI	CCATGG	1 cut(s)	481
NdeII	GATC	5 cut(s)	42, 46, 361, 619, 689
NlaIII	CATG	3 cut(s)	485, 547, 729
NlaIV	GGNNCC	2 cut(s)	371, 372
NmuCI	GTSAC	4 cut(s)	217, 533, 553, 611
NspI	RCATGY	1 cut(s)	729
PaeR7I	CTCGAG	1 cut(s)	83
PciI	ACATGT	1 cut(s)	725
PctI	GAATGC	1 cut(s)	517
PfeI	GAWTC	4 cut(s)	272, 655, 665, 796
PkrI	GCNGC	1 cut(s)	226
PleI	GAGTC	2 cut(s)	107, 550
PpsI	GAGTC	2 cut(s)	107, 550
PpuMI	RGGWCCY	1 cut(s)	370
PscI	ACATGT	1 cut(s)	725
Psp124BI	GAGCTC	1 cut(s)	146
Psp5II	RGGWCCY	1 cut(s)	370
PspFI	CCCAGC	1 cut(s)	755
PspN4I	GGNNCC	2 cut(s)	371, 372
PspPI	GGNCC	2 cut(s)	370, 733
PspPPI	RGGWCCY	1 cut(s)	370
PstI	CTGCAG	1 cut(s)	601
PsuI	RGATCY	1 cut(s)	689
RsaI	GTAC	3 cut(s)	234, 478, 730
RsaNI	GTAC	3 cut(s)	233, 477, 729
SacI	GAGCTC	1 cut(s)	146
SaqAI	TTAA	5 cut(s)	240, 317, 339, 426, 497
SatI	GCNGC	1 cut(s)	225
Sau3AI	GATC	5 cut(s)	42, 46, 361, 619, 689
Sau96I	GGNCC	2 cut(s)	370, 733
SbfI	CCTGCAGG	1 cut(s)	601
SchI	GAGTC	2 cut(s)	107, 550
ScrFI	CCNGG	1 cut(s)	345
SdaI	CCTGCAGG	1 cut(s)	601
SduI	GDGCHC	2 cut(s)	146, 817
SetI	ASST	7 cut(s)	146, 240, 525, 598, 636, 676, 747
SfaNI	GCATC	2 cut(s)	445, 593
SfcI	CTRYAG	3 cut(s)	267, 297, 597
Sfr274I	CTCGAG	1 cut(s)	83
SinI	GGWCC	2 cut(s)	370, 733
SlaI	CTCGAG	1 cut(s)	83
SmlI	CTYRAG	2 cut(s)	83, 239
SmoI	CTYRAG	2 cut(s)	83, 239
Sse8387I	CCTGCAGG	1 cut(s)	601
Sse9I	AATT	1 cut(s)	489
SsiI	CCGC	2 cut(s)	430, 518
SspMI	CTAG	1 cut(s)	588
SstI	GAGCTC	1 cut(s)	146
StyD4I	CCNGG	1 cut(s)	343
StyI	CCWWGG	2 cut(s)	161, 481
TaaI	ACNGT	8 cut(s)	91, 217, 232, 294, 443, 452, 539, 733
TaqI	TCGA	3 cut(s)	45, 84, 526
TasI	AATT	1 cut(s)	489
TatI	WGTACW	1 cut(s)	232
TfiI	GAWTC	4 cut(s)	272, 655, 665, 796
Tru1I	TTAA	5 cut(s)	240, 317, 339, 426, 497
Tru9I	TTAA	5 cut(s)	240, 317, 339, 426, 497
TscAI	CASTG	2 cut(s)	403, 446
TseFI	GTSAC	4 cut(s)	217, 533, 553, 611
TseI	GCWGC	1 cut(s)	224
Tsp45I	GTSAC	4 cut(s)	217, 533, 553, 611
TspDTI	ATGAA	3 cut(s)	344, 393, 596
TspGWI	ACGGA	1 cut(s)	26
TspRI	CASTG	2 cut(s)	403, 446
Vha464I	CTTAAG	1 cut(s)	239
VpaK11BI	GGWCC	2 cut(s)	370, 733
XceI	RCATGY	1 cut(s)	729
XcmI	CCANNNNNNNNNTGG	1 cut(s)	205
XhoI	CTCGAG	1 cut(s)	83
XmiI	GTMKAC	1 cut(s)	296
XspI	CTAG	1 cut(s)	588

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.