RchiOBHm_Chr6g0303371

Protein present in Fab1, YOTB, Vac1, and EEA1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0010321
Physical Location & Seq
Forward (+)
63102758 .. 63108237
5480 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ27253

Sequence Viewer

Length: 822 bp
ATGGATGTTCTTTGCCAGATTGGTTTGGATGGTATTCGTATGCTTGATCCTGCTACCAGTCGGACACTGAGAATATATCCGCTCGAGACCATCACTAGATGTGAAGTAACAGATTCATCTATCTTTGCTTTTTGGTCAAAGAGTTCTGTTGACATTGAACCAAGACGGATTAGATTGCAGTCAAATAGTTACACTACAAACACCCTTTTGGATACAGTGACTGCTGCAACCGTACAGCTCAAGGAGATGGGTGGCAGTAGCAGGCCAGCTGAATCTTTGAAGACAAATGAACAGTCTGCAGAAAGGAAGAAAGGATTAACCGATTGGATGAACATTATAAAGCCAGGAAATGAGGAGAAAGATCATTGGGTCCCTGATGAAGCAGTTTCAAAATGTACAGCATGTGGAACAGATTTTGGGGCTTTTGTACGTAGGCATCACTGCCGGAACTGTGGAGATATCTTTTGTGACAAGTGTACCCATGGCAGAATTGCATTAACTGCTGAAGAAAATGCTCCGCAGGTTCGAGTTTGTGATCGGTGCATGGCTGAAGTAACTCAGAGGCTGAGTAATGCCAAGGAAGCATCCGGTAAACCTGCAGCATTGCATAGTCATGAGGATCTTGCCAAGAAGCTTCAGGCCGAGATGGAGAAGAACCGCAGGGAATCTTCAGGTTCCAAGTCAGATGGATCTGGAAGACGGATGAGAGAAGTTGCTTGTCCTACATGCACTGTCCACTTGCAGGTCCAAGTTCCTAGCTCAGGTTCAGAGACAATAGAGTGTGGGGTTTGCCAGCATCCATTCCTTGTGAGTGCTCACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FYVE PTB

Protein Analysis

273

Amino Acids

30.18

Weight (kDa)

7.08

Isoelectric Point (pI)

53.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FYVE PF01363 122 - 186 8.9e-21 FYVE zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 338
Acc36I ACCTGC 3 cut(s) 511, 604, 733
AccBSI CCGCTC 1 cut(s) 82
AciI CCGC 3 cut(s) 80, 518, 658
AclWI GGATC 3 cut(s) 41, 627, 697
AcuI CTGAAG 4 cut(s) 525, 570, 620, 654
AfaI GTAC 4 cut(s) 234, 397, 429, 478
AfiI CCNNNNNNNGG 2 cut(s) 742, 761
AgsI TTSAA 3 cut(s) 158, 280, 390
AjnI CCWGG 1 cut(s) 343
AluBI AGCT 4 cut(s) 238, 269, 634, 759
AluI AGCT 4 cut(s) 238, 269, 634, 759
Alw21I GWGCWC 1 cut(s) 817
Alw26I GTCTC 2 cut(s) 80, 764
AlwI GGATC 3 cut(s) 41, 627, 697
AlwNI CAGNNNCTG 2 cut(s) 221, 565
Ama87I CYCGRG 1 cut(s) 83
AoxI GGCC 2 cut(s) 263, 639
ApeKI GCWGC 2 cut(s) 224, 599
ArsI GACNNNNNNTTYG 2 cut(s) 278, 310
AspS9I GGNCC 2 cut(s) 370, 745
AvaI CYCGRG 1 cut(s) 83
AvaII GGWCC 2 cut(s) 370, 745
BaeI ACNNNNGTAYC 2 cut(s) 460, 493
BbsI GAAGAC 2 cut(s) 287, 703
Bbv12I GWGCWC 1 cut(s) 817
BbvI GCAGC 2 cut(s) 211, 611
BccI CCATC 5 cut(s) 23, 98, 241, 640, 680
BciT130I CCWGG 1 cut(s) 345
BciVI GTATCC 1 cut(s) 205
BcoDI GTCTC 2 cut(s) 80, 764
BfaI CTAG 2 cut(s) 96, 756
BfmI CTRYAG 2 cut(s) 297, 597
BfuAI ACCTGC 3 cut(s) 511, 604, 733
BfuI GTATCC 1 cut(s) 205
BisI GCNGC 2 cut(s) 225, 600
BlsI GCNGC 2 cut(s) 226, 601
Bme1390I CCNGG 1 cut(s) 345
Bme18I GGWCC 2 cut(s) 370, 745
BmeT110I CYCGRG 1 cut(s) 83
BmgT120I GGNCC 2 cut(s) 370, 745
BmiI GGNNCC 3 cut(s) 371, 372, 676
BmrFI CCNGG 1 cut(s) 345
BmsI GCATC 3 cut(s) 445, 593, 805
BpiI GAAGAC 2 cut(s) 287, 703
Bpu10I CCTNAGC 1 cut(s) 760
BpuEI CTTGAG 1 cut(s) 224
BsaAI YACGTR 1 cut(s) 431
BsaI GGTCTC 1 cut(s) 80
BsaJI CCNNGG 2 cut(s) 481, 576
BsaWI WCCGGW 1 cut(s) 587
Bsc4I CCNNNNNNNGG 2 cut(s) 742, 761
Bse1I ACTGG 1 cut(s) 57
Bse3DI GCAATG 1 cut(s) 602
BseBI CCWGG 1 cut(s) 345
BseDI CCNNGG 2 cut(s) 481, 576
BseGI GGATG 6 cut(s) 10, 34, 333, 584, 708, 796
BseLI CCNNNNNNNGG 2 cut(s) 742, 761
BseMI GCAATG 1 cut(s) 602
BseMII CTCAG 4 cut(s) 59, 557, 572, 774
BseNI ACTGG 1 cut(s) 57
BseRI GAGGAG 1 cut(s) 368
BseXI GCAGC 2 cut(s) 211, 611
BshFI GGCC 2 cut(s) 265, 641
BsiHKAI GWGCWC 1 cut(s) 817
BsiHKCI CYCGRG 1 cut(s) 83
BsiSI CCGG 2 cut(s) 445, 588
BslFI GGGAC 1 cut(s) 356
BslI CCNNNNNNNGG 2 cut(s) 742, 761
BsmAI GTCTC 2 cut(s) 80, 764
BsmFI GGGAC 1 cut(s) 356
BsnI GGCC 2 cut(s) 265, 641
Bso31I GGTCTC 1 cut(s) 80
BsoBI CYCGRG 1 cut(s) 83
Bsp1286I GDGCHC 1 cut(s) 817
Bsp1407I TGTACA 1 cut(s) 395
Bsp143I GATC 5 cut(s) 46, 361, 535, 619, 689
Bsp19I CCATGG 1 cut(s) 481
BspACI CCGC 3 cut(s) 80, 518, 658
BspANI GGCC 2 cut(s) 265, 641
BspCNI CTCAG 4 cut(s) 60, 558, 571, 773
BspHI TCATGA 1 cut(s) 613
BspLI GGNNCC 3 cut(s) 371, 372, 676
BspMAI CTGCAG 2 cut(s) 301, 601
BspMI ACCTGC 3 cut(s) 511, 604, 733
BspPI GGATC 3 cut(s) 41, 627, 697
BspTNI GGTCTC 1 cut(s) 80
BsrBI CCGCTC 1 cut(s) 82
BsrDI GCAATG 1 cut(s) 602
BsrGI TGTACA 1 cut(s) 395
BsrI ACTGG 1 cut(s) 57
BssECI CCNNGG 2 cut(s) 481, 576
BssMI GATC 5 cut(s) 46, 361, 535, 619, 689
BssT1I CCWWGG 2 cut(s) 481, 576
Bst2UI CCWGG 1 cut(s) 345
Bst4CI ACNGT 5 cut(s) 217, 232, 294, 452, 733
BstAPI GCANNNNNTGC 1 cut(s) 500
BstAUI TGTACA 1 cut(s) 395
BstBAI YACGTR 1 cut(s) 431
BstC8I GCNNGC 3 cut(s) 263, 267, 794
BstDEI CTNAG 4 cut(s) 68, 558, 566, 760
BstDSI CCRYGG 1 cut(s) 481
BstENI CCTNNNNNAGG 1 cut(s) 759
BstF5I GGATG 6 cut(s) 10, 34, 333, 584, 708, 796
BstKTI GATC 5 cut(s) 49, 364, 538, 622, 692
BstMAI GTCTC 2 cut(s) 80, 764
BstMBI GATC 5 cut(s) 46, 361, 535, 619, 689
BstMWI GCNNNNNNNGC 2 cut(s) 500, 581
BstNI CCWGG 1 cut(s) 345
BstNSI RCATGY 2 cut(s) 405, 729
BstSCI CCNGG 1 cut(s) 343
BstSFI CTRYAG 2 cut(s) 297, 597
BstSNI TACGTA 1 cut(s) 431
BstV1I GCAGC 2 cut(s) 211, 611
BstV2I GAAGAC 2 cut(s) 287, 703
BstX2I RGATCY 2 cut(s) 619, 689
BstYI RGATCY 2 cut(s) 619, 689
BsuI GTATCC 1 cut(s) 205
BsuRI GGCC 2 cut(s) 265, 641
BtgI CCRYGG 1 cut(s) 481
BtsCI GGATG 6 cut(s) 10, 34, 333, 584, 708, 796
BtsI GCAGTG 1 cut(s) 439
BtsIMutI CAGTG 5 cut(s) 65, 222, 439, 729, 817
BveI ACCTGC 3 cut(s) 511, 604, 733
Cac8I GCNNGC 3 cut(s) 263, 267, 794
CaiI CAGNNNCTG 2 cut(s) 221, 565
CciI TCATGA 1 cut(s) 613
Cfr13I GGNCC 2 cut(s) 370, 745
Csp6I GTAC 4 cut(s) 233, 396, 428, 477
CviAII CATG 5 cut(s) 402, 482, 544, 614, 726
CviQI GTAC 4 cut(s) 233, 396, 428, 477
DdeI CTNAG 4 cut(s) 68, 558, 566, 760
DpnI GATC 5 cut(s) 48, 363, 537, 621, 691
DpnII GATC 5 cut(s) 46, 361, 535, 619, 689
Eco105I TACGTA 1 cut(s) 431
Eco130I CCWWGG 2 cut(s) 481, 576
Eco31I GGTCTC 1 cut(s) 80
Eco32I GATATC 1 cut(s) 460
Eco47I GGWCC 2 cut(s) 370, 745
Eco57I CTGAAG 4 cut(s) 525, 570, 620, 654
Eco88I CYCGRG 1 cut(s) 83
EcoNI CCTNNNNNAGG 1 cut(s) 759
EcoO109I RGGNCCY 1 cut(s) 370
EcoRII CCWGG 1 cut(s) 343
EcoRV GATATC 1 cut(s) 460
EcoT14I CCWWGG 2 cut(s) 481, 576
ErhI CCWWGG 2 cut(s) 481, 576
FaeI CATG 5 cut(s) 405, 485, 547, 617, 729
FaiI YATR 9 cut(s) 41, 76, 338, 403, 483, 545, 609, 615, 727
FaqI GGGAC 1 cut(s) 356
FatI CATG 5 cut(s) 401, 481, 543, 613, 725
Fnu4HI GCNGC 2 cut(s) 225, 600
FokI GGATG 6 cut(s) 17, 41, 340, 571, 715, 783
Fsp4HI GCNGC 2 cut(s) 225, 600
FspBI CTAG 2 cut(s) 96, 756
GluI GCNGC 2 cut(s) 225, 600
HaeIII GGCC 2 cut(s) 265, 641
HapII CCGG 2 cut(s) 445, 588
Hin1II CATG 5 cut(s) 405, 485, 547, 617, 729
HincII GTYRAC 1 cut(s) 151
HindII GTYRAC 1 cut(s) 151
HindIII AAGCTT 1 cut(s) 632
HinfI GANTC 3 cut(s) 113, 272, 665
HpaII CCGG 2 cut(s) 445, 588
Hpy166II GTNNAC 4 cut(s) 151, 477, 593, 736
Hpy188I TCNGA 4 cut(s) 63, 561, 685, 769
Hpy188III TCNNGA 3 cut(s) 85, 614, 693
Hpy8I GTNNAC 4 cut(s) 151, 477, 593, 736
HpyCH4III ACNGT 5 cut(s) 217, 232, 294, 452, 733
HpyCH4IV ACGT 1 cut(s) 430
HpyCH4V TGCA 9 cut(s) 178, 227, 299, 494, 543, 599, 607, 729, 742
HpyF10VI GCNNNNNNNGC 2 cut(s) 500, 581
HpyF3I CTNAG 4 cut(s) 68, 558, 566, 760
HpySE526I ACGT 1 cut(s) 430
Hsp92II CATG 5 cut(s) 405, 485, 547, 617, 729
KflI GGGWCCC 1 cut(s) 370
Kzo9I GATC 5 cut(s) 46, 361, 535, 619, 689
LmnI GCTCC 1 cut(s) 520
Lsp1109I GCAGC 2 cut(s) 211, 611
LweI GCATC 3 cut(s) 445, 593, 805
MaeI CTAG 2 cut(s) 96, 756
MaeII ACGT 1 cut(s) 430
MaeIII GTNAC 5 cut(s) 106, 188, 217, 467, 553
MalI GATC 5 cut(s) 48, 363, 537, 621, 691
MbiI CCGCTC 1 cut(s) 82
MboI GATC 5 cut(s) 46, 361, 535, 619, 689
MboII GAAGA 6 cut(s) 292, 319, 518, 660, 664, 708
MflI RGATCY 2 cut(s) 619, 689
MhlI GDGCHC 1 cut(s) 817
MluCI AATT 1 cut(s) 489
MmeI TCCRAC 1 cut(s) 41
MnlI CCTC 3 cut(s) 346, 555, 610
MseI TTAA 2 cut(s) 317, 497
MslI CAYNNNNRTG 1 cut(s) 612
MspA1I CMGCKG 1 cut(s) 269
MspI CCGG 2 cut(s) 445, 588
MspR9I CCNGG 1 cut(s) 345
MvaI CCWGG 1 cut(s) 345
MwoI GCNNNNNNNGC 2 cut(s) 500, 581
NcoI CCATGG 1 cut(s) 481
NdeII GATC 5 cut(s) 46, 361, 535, 619, 689
NlaIII CATG 5 cut(s) 405, 485, 547, 617, 729
NlaIV GGNNCC 3 cut(s) 371, 372, 676
NmeAIII GCCGAG 1 cut(s) 667
NmuCI GTSAC 2 cut(s) 217, 467
NspI RCATGY 2 cut(s) 405, 729
PaeR7I CTCGAG 1 cut(s) 83
PagI TCATGA 1 cut(s) 613
PfeI GAWTC 3 cut(s) 113, 272, 665
PkrI GCNGC 2 cut(s) 226, 601
Ppu21I YACGTR 1 cut(s) 431
PpuMI RGGWCCY 1 cut(s) 370
PsiI TTATAA 1 cut(s) 338
Psp5II RGGWCCY 1 cut(s) 370
Psp6I CCWGG 1 cut(s) 343
PspGI CCWGG 1 cut(s) 343
PspN4I GGNNCC 3 cut(s) 371, 372, 676
PspPI GGNCC 2 cut(s) 370, 745
PspPPI RGGWCCY 1 cut(s) 370
PstI CTGCAG 2 cut(s) 301, 601
PstNI CAGNNNCTG 2 cut(s) 221, 565
PsuI RGATCY 2 cut(s) 619, 689
PvuII CAGCTG 1 cut(s) 269
RsaI GTAC 4 cut(s) 234, 397, 429, 478
RsaNI GTAC 4 cut(s) 233, 396, 428, 477
RseI CAYNNNNRTG 1 cut(s) 612
SaqAI TTAA 2 cut(s) 317, 497
SatI GCNGC 2 cut(s) 225, 600
Sau3AI GATC 5 cut(s) 46, 361, 535, 619, 689
Sau96I GGNCC 2 cut(s) 370, 745
ScrFI CCNGG 1 cut(s) 345
SduI GDGCHC 1 cut(s) 817
SfaNI GCATC 3 cut(s) 445, 593, 805
SfcI CTRYAG 2 cut(s) 297, 597
Sfr274I CTCGAG 1 cut(s) 83
SinI GGWCC 2 cut(s) 370, 745
SlaI CTCGAG 1 cut(s) 83
SmiMI CAYNNNNRTG 1 cut(s) 612
SmlI CTYRAG 2 cut(s) 83, 239
SmoI CTYRAG 2 cut(s) 83, 239
SnaBI TACGTA 1 cut(s) 431
Sse9I AATT 1 cut(s) 489
SsiI CCGC 3 cut(s) 80, 518, 658
SspMI CTAG 2 cut(s) 96, 756
StyD4I CCNGG 1 cut(s) 343
StyI CCWWGG 2 cut(s) 481, 576
TaaI ACNGT 5 cut(s) 217, 232, 294, 452, 733
TaiI ACGT 1 cut(s) 433
TaqI TCGA 2 cut(s) 84, 526
TasI AATT 1 cut(s) 489
TatI WGTACW 1 cut(s) 395
TfiI GAWTC 3 cut(s) 113, 272, 665
Tru1I TTAA 2 cut(s) 317, 497
Tru9I TTAA 2 cut(s) 317, 497
TscAI CASTG 4 cut(s) 72, 222, 446, 736
TseFI GTSAC 2 cut(s) 217, 467
TseI GCWGC 2 cut(s) 224, 599
Tsp45I GTSAC 2 cut(s) 217, 467
TspDTI ATGAA 4 cut(s) 105, 303, 344, 393
TspGWI ACGGA 2 cut(s) 181, 715
TspRI CASTG 4 cut(s) 72, 222, 446, 736
VpaK11BI GGWCC 2 cut(s) 370, 745
XagI CCTNNNNNAGG 1 cut(s) 759
XceI RCATGY 2 cut(s) 405, 729
XhoI CTCGAG 1 cut(s) 83
XspI CTAG 2 cut(s) 96, 756
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.