Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0010321

Physical Location & Seq

Genomic Coordinates Reverse (-)

47248563 .. 47251737

Gene Structure 3175 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0320900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2205 bp

ATGTCTTCTGCTGCCATAATGGACAGTGAGTGCATCAAGATTTACTTGTCCAATTTAGCCATGAAAAGCCAATGGGGAGAAGTTGTCCTAGCATATAGGCTGAACAGGTGGGCTCGCGAGGCAAAGATCACCAAGTCAGGTGACACGGCATTGCACATAACAGTGTATCTAGGCCTAGAGGAACGTGTTGAAGAACTAGTAAACCTGGTTACCATAGAGGAGCTGAAACTCCAAAATGAGCGAGGGAACACCCCTCTCCATTTGGCTGCAGCACAGGGGAATGTGAGAATGTGCGAATGCATTGCCAAAGGTCGTGCTTCTTTGGTTGGTATTCTCAACAAAGATAAAGAGACCCCTCTCTTCTTGGCTGCTCTCCATGGTAAAAAAGATGCCTTCTTGTGGCTCCACTACATTTGTACTCCTGATGAGTCTCATCCAAAATGCTACAAGTACTGTAGGAGGGGTGATGGGGAGACTATCTTGCATTGTGCAATTTCTCGGGACTACTTTGATTTGGCATTTCAGATAATAGCCCTGTATAAAGATCTAGTTAATTCTGTTAATGAAGTCGGGTTTTCGCCTCTCCATCTTCTGGCGAGTAAGCCTTCCGCCTTCAAAAGTGGTAGCCAGCTTAGAAGTTGGGACATAATTATTTACCATTGTACATTGGTCCATAAGCTGAAGGTGGAAGAAGCAGATCACTTCCATGAGCGGGTAATTAATACAATTAACTTTGAAAAGGCTCCGAAGTACCCAGAAAACTACAAAACCTGCATCAACTTCTTGCTAGTGTTCTGGAAGATGGCCCAAGTATTTGTTCCTCATAAAGAAGTGGACCAAGATCCAGAGAACCCTAGAGAACCTACTGGAGGAAATCCTAATTGCAACACCTGCTTTGATTTTGTCAAGCTTTTAGCAAACGTAGTGCTGATTGTTCTTGGATTAGGGTCTACGGAGATACAGAAGATAAAGCATATGAAAGAAAAGCACAAATGGGCTGTTCAGATCATGGACAAGCTACTAGAAAGTGCTTCGATGTATGAATATGAAGACAGTGGTATGAAGCCGCAGGCAGCACCAATATTCTCCCACATGGACGATGAAACAATAAGGCAGCTGTACAAAATCACCCACGGTGGCGACAGCACCACCTTTGGAAACATTGAAGAAGAGATAATGACTCTTCCTCCCAGTATGGAAACAATAAGGCAGTACAAAATCTCCCACGGTGGCGACAGCACCACCTTTAGAAACATTGAAGAAGAGATAATGACTCTTCCTCCCAGTATGGAAAAGAAGGAAACACCCATATTGATTGCTGCGAAGAATGGTGTGACTGAAATGGTGGAGAAGATCCTAGAACTTTTTCCAGTGGCCATACATGACCTTAATGCACAGAAAAAGAATATAGTTCTGTTGGCTGTGGAGCACAGGCAACCCCATGTGTACCGACTCTTGCTAAAGAGAAAGATCATGAGAGAAAGCGTTTTCTGCAAAGTGGATAAAGATGGCAATAGTGCATTACACCTTGCAGCAAAGTTGGGAGAATATAAGCCTCGGCAAATTCCTGGTGCTGCCTTGCAAATGCAATGGGAAATCAAGTGGTATGAGTTCGTGAAGAACTCCATGCCACAAGACTTCTTTGTCTATTACAATAAGCAAGCCCAGACTGCAAAGGAAATCTTGACCGATACCCACACTAACCTTGTCAGAGATGGGACGGTGTGGCTCAACAAGACCTCCGAGTCCTGCTCCGTCGTGGCTGCCCTGATTGTCACCGTAGCCTTTGCCACAGCTACTACCGTTCCGGGTGGCATCAATCAGGATACTGGCAGGCCAACCTTCGAAAATCACCGAGGCTTTGAACTGTATACCTTGTCATCGCTTGCTGCTGTCTGCTTCTCATTCACTTCCATGGTCATATTCCTATCCATCGTCATGTCTCAACCCCAACAAGAGGATTTCGGAGAAGCAGTGCCGAGGAAGCTTTGGCTGGGCTTAACAACCCTCTTCCTGTCCATGGTTGCCATGCTGATGTCGTTTTGCATTGGACATTCCTTTATACTTAAACATAATCACAAGTACGCTGCATTTCCAGTTTATGTCGTATCGTGCTCCCCTATAGCTTATTTTGTGATAGTGCACTTTCCAGTGTATTATAATCTCGTACGGGCCAACAAAGTGCCTGTCCGGCGCCTACCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FYVE PTB

Protein Analysis

734

Amino Acids

83.38

Weight (kDa)

7.59

Isoelectric Point (pI)

42.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ank_2	PF12796	44 - 102	2.9e-06	Ankyrin repeats (3 copies)
Ank_2	PF12796	51 - 135	3.2e-09	Ankyrin repeats (3 copies)
Ank_2	PF12796	438 - 517	1.1e-06	Ankyrin repeats (3 copies)
PGG	PF13962	576 - 686	1.4e-23	Domain of unknown function

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010321)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G20110
fragaria_vesca	FvH4_2g38130 FvH4_2g38130 FvH4_2g38130
malus_domestica	MD08G1009900.v1.1 MD15G1009800.v1.1
prunus_persica	Prupe.1G362200_v2.0.a1 Prupe.1G362200_v2.0.a1 Prupe.1G362200_v2.0.a1
pyrus_communis	pycom15g00780
rosa_chinensis	RchiOBHm_Chr6g0303371
rosa_laevigata	RLG00000011089
rosa_multiflora	Rmu_ssc0000114.1_g000060
rosa_roxburghii	Rroxscaffold_7G00164840
rosa_rugosa	Rorug06G0320900 Rorug06G0321000
rosa_samantha	Rh6AG435200 Rh6BG468000 Rh6CG447200 Rh6DG434000
rosa_wichuraiana	Rw6G037680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	2160
AarI	CACCTGC	1 cut(s)	899
AasI	GACNNNNNNGTC	2 cut(s)	1643, 1744
Acc36I	ACCTGC	2 cut(s)	779, 899
AccB1I	GGYRCC	1 cut(s)	2193
AccB7I	CCANNNNNTGG	1 cut(s)	592
AccBSI	CCGCTC	1 cut(s)	712
AccI	GTMKAC	2 cut(s)	950, 1871
AccII	CGCG	1 cut(s)	117
AciI	CCGC	3 cut(s)	609, 712, 1067
AclWI	GGATC	2 cut(s)	836, 1348
AcoI	YGGCCR	1 cut(s)	1374
AcsI	RAATTY	1 cut(s)	1563
AcuI	CTGAAG	1 cut(s)	701
AcyI	GRCGYC	1 cut(s)	2194
AfaI	GTAC	9 cut(s)	418, 452, 664, 752, 1121, 1214, 1448, 2084, 2169
AfiI	CCNNNNNNNGG	6 cut(s)	399, 592, 712, 869, 1957, 2020
AflIII	ACRYGT	1 cut(s)	184
AgsI	TTSAA	6 cut(s)	191, 616, 737, 1166, 1259, 1865
AhlI	ACTAGT	1 cut(s)	196
AjnI	CCWGG	2 cut(s)	204, 1567
AjuI	GAANNNNNNNTTGG	2 cut(s)	801, 833
AluBI	AGCT	9 cut(s)	223, 631, 679, 910, 1018, 1117, 1796, 1987, 2126
AluI	AGCT	9 cut(s)	223, 631, 679, 910, 1018, 1117, 1796, 1987, 2126
Alw21I	GWGCWC	3 cut(s)	1431, 2117, 2145
Alw26I	GTCTC	4 cut(s)	344, 435, 467, 1947
Alw44I	GTGCAC	1 cut(s)	2141
AlwI	GGATC	2 cut(s)	836, 1348
Ama87I	CYCGRG	1 cut(s)	498
AoxI	GGCC	5 cut(s)	172, 804, 1374, 1835, 2172
ApaLI	GTGCAC	1 cut(s)	2141
ApoI	RAATTY	1 cut(s)	1563
ArsI	GACNNNNNNTTYG	2 cut(s)	2172, 2204
AseI	ATTAAT	1 cut(s)	720
Asp700I	GAANNNNTTC	1 cut(s)	1365
AspLEI	GCGC	1 cut(s)	2196
AspS9I	GGNCC	4 cut(s)	670, 805, 835, 2172
AsuC2I	CCSGG	1 cut(s)	1809
AsuHPI	GGTGA	6 cut(s)	121, 152, 476, 1120, 1768, 1844
AsuII	TTCGAA	1 cut(s)	1845
AvaI	CYCGRG	1 cut(s)	498
AvaII	GGWCC	2 cut(s)	670, 835
BaeGI	GKGCMC	1 cut(s)	2145
BalI	TGGCCA	1 cut(s)	1376
BanI	GGYRCC	1 cut(s)	2193
BanII	GRGCYC	1 cut(s)	115
BbsI	GAAGAC	1 cut(s)	1056
Bbv12I	GWGCWC	3 cut(s)	1431, 2117, 2145
BccI	CCATC	6 cut(s)	461, 594, 796, 1502, 1709, 1940
BceAI	ACGGC	1 cut(s)	162
BcgI	CGANNNNNNTGC	2 cut(s)	284, 318
BciT130I	CCWGG	2 cut(s)	206, 1569
BciVI	GTATCC	1 cut(s)	1819
BcnI	CCSGG	1 cut(s)	1809
BcoDI	GTCTC	4 cut(s)	344, 435, 467, 1947
BcuI	ACTAGT	1 cut(s)	196
BfaI	CTAG	9 cut(s)	89, 170, 176, 197, 548, 788, 855, 1022, 1358
BfmI	CTRYAG	3 cut(s)	267, 454, 2121
BfoI	RGCGCY	1 cut(s)	2197
BfuAI	ACCTGC	2 cut(s)	779, 899
BfuI	GTATCC	1 cut(s)	1819
BglI	GCCNNNNNGGC	1 cut(s)	2191
BglII	AGATCT	1 cut(s)	544
BmcAI	AGTACT	1 cut(s)	452
Bme1390I	CCNGG	3 cut(s)	206, 1569, 1809
Bme18I	GGWCC	2 cut(s)	670, 835
BmeT110I	CYCGRG	1 cut(s)	498
BmgT120I	GGNCC	4 cut(s)	670, 805, 835, 2172
BmiI	GGNNCC	3 cut(s)	404, 744, 2195
BmrFI	CCNGG	3 cut(s)	206, 1569, 1809
BmrI	ACTGGG	2 cut(s)	1185, 1278
BmsI	GCATC	4 cut(s)	42, 379, 783, 1824
BmuI	ACTGGG	2 cut(s)	1185, 1278
BpiI	GAAGAC	1 cut(s)	1056
BplI	GAGNNNNNCTC	2 cut(s)	1736, 1768
BpmI	CTGGAG	1 cut(s)	888
Bpu14I	TTCGAA	1 cut(s)	1845
BpuMI	CCSGG	1 cut(s)	1809
BsaHI	GRCGYC	1 cut(s)	2194
BsaI	GGTCTC	1 cut(s)	344
BsaJI	CCNNGG	8 cut(s)	376, 1132, 1225, 1556, 1855, 1914, 1979, 2019
Bsc4I	CCNNNNNNNGG	6 cut(s)	399, 592, 712, 869, 1957, 2020
Bse1I	ACTGG	7 cut(s)	871, 1191, 1284, 1370, 1834, 2096, 2150
Bse3DI	GCAATG	3 cut(s)	149, 300, 1595
BseBI	CCWGG	2 cut(s)	206, 1569
BseDI	CCNNGG	8 cut(s)	376, 1132, 1225, 1556, 1855, 1914, 1979, 2019
BseGI	GGATG	1 cut(s)	433
BseLI	CCNNNNNNNGG	6 cut(s)	399, 592, 712, 869, 1957, 2020
BseMI	GCAATG	3 cut(s)	149, 300, 1595
BseNI	ACTGG	7 cut(s)	871, 1191, 1284, 1370, 1834, 2096, 2150
BseRI	GAGGAG	1 cut(s)	233
BseSI	GKGCMC	1 cut(s)	2145
BseYI	CCCAGC	1 cut(s)	1993
Bsh1236I	CGCG	1 cut(s)	117
BshFI	GGCC	5 cut(s)	174, 806, 1376, 1837, 2174
BshNI	GGYRCC	1 cut(s)	2193
BsiHKAI	GWGCWC	3 cut(s)	1431, 2117, 2145
BsiHKCI	CYCGRG	1 cut(s)	498
BsiSI	CCGG	2 cut(s)	1808, 2191
BsiWI	CGTACG	1 cut(s)	2167
BslFI	GGGAC	3 cut(s)	515, 656, 1732
BslI	CCNNNNNNNGG	6 cut(s)	399, 592, 712, 869, 1957, 2020
BsmAI	GTCTC	4 cut(s)	344, 435, 467, 1947
BsmFI	GGGAC	3 cut(s)	515, 656, 1732
BsmI	GAATGC	1 cut(s)	302
BsnI	GGCC	5 cut(s)	174, 806, 1376, 1837, 2174
Bso31I	GGTCTC	1 cut(s)	344
BsoBI	CYCGRG	1 cut(s)	498
Bsp119I	TTCGAA	1 cut(s)	1845
Bsp1286I	GDGCHC	4 cut(s)	115, 1431, 2117, 2145
Bsp1407I	TGTACA	2 cut(s)	662, 1119
Bsp143I	GATC	7 cut(s)	126, 544, 697, 841, 1005, 1353, 1470
Bsp19I	CCATGG	3 cut(s)	376, 1914, 2019
Bsp68I	TCGCGA	1 cut(s)	117
BspACI	CCGC	3 cut(s)	609, 712, 1067
BspANI	GGCC	5 cut(s)	174, 806, 1376, 1837, 2174
BspFNI	CGCG	1 cut(s)	117
BspHI	TCATGA	1 cut(s)	1473
BspLI	GGNNCC	3 cut(s)	404, 744, 2195
BspMAI	CTGCAG	1 cut(s)	271
BspMI	ACCTGC	2 cut(s)	779, 899
BspPI	GGATC	2 cut(s)	836, 1348
BspT104I	TTCGAA	1 cut(s)	1845
BspT107I	GGYRCC	1 cut(s)	2193
BspTNI	GGTCTC	1 cut(s)	344
BsrBI	CCGCTC	1 cut(s)	712
BsrDI	GCAATG	3 cut(s)	149, 300, 1595
BsrGI	TGTACA	2 cut(s)	662, 1119
BsrI	ACTGG	7 cut(s)	871, 1191, 1284, 1370, 1834, 2096, 2150
BssECI	CCNNGG	8 cut(s)	376, 1132, 1225, 1556, 1855, 1914, 1979, 2019
BssMI	GATC	7 cut(s)	126, 544, 697, 841, 1005, 1353, 1470
BssNAI	GTATAC	1 cut(s)	1872
BssNI	GRCGYC	1 cut(s)	2194
BssT1I	CCWWGG	3 cut(s)	376, 1914, 2019
Bst1107I	GTATAC	1 cut(s)	1872
Bst2UI	CCWGG	2 cut(s)	206, 1569
Bst6I	CTCTTC	6 cut(s)	365, 1164, 1188, 1257, 1281, 2015
BstACI	GRCGYC	1 cut(s)	2194
BstAPI	GCANNNNNTGC	1 cut(s)	891
BstAUI	TGTACA	2 cut(s)	662, 1119
BstBI	TTCGAA	1 cut(s)	1845
BstC8I	GCNNGC	6 cut(s)	115, 629, 1071, 1662, 1835, 1887
BstDEI	CTNAG	1 cut(s)	632
BstDSI	CCRYGG	5 cut(s)	376, 1132, 1225, 1914, 2019
BstEII	GGTNACC	1 cut(s)	208
BstENI	CCTNNNNNAGG	1 cut(s)	867
BstF5I	GGATG	1 cut(s)	433
BstFNI	CGCG	1 cut(s)	117
BstH2I	RGCGCY	1 cut(s)	2197
BstHHI	GCGC	1 cut(s)	2196
BstKTI	GATC	7 cut(s)	129, 547, 700, 844, 1008, 1356, 1473
BstMAI	GTCTC	4 cut(s)	344, 435, 467, 1947
BstMBI	GATC	7 cut(s)	126, 544, 697, 841, 1005, 1353, 1470
BstMWI	GCNNNNNNNGC	6 cut(s)	119, 891, 1491, 1670, 1984, 2191
BstNI	CCWGG	2 cut(s)	206, 1569
BstPI	GGTNACC	1 cut(s)	208
BstSCI	CCNGG	3 cut(s)	204, 1567, 1807
BstSFI	CTRYAG	3 cut(s)	267, 454, 2121
BstSLI	GKGCMC	1 cut(s)	2145
BstUI	CGCG	1 cut(s)	117
BstV2I	GAAGAC	1 cut(s)	1056
BstX2I	RGATCY	3 cut(s)	544, 841, 1353
BstYI	RGATCY	3 cut(s)	544, 841, 1353
BstZ17I	GTATAC	1 cut(s)	1872
BsuI	GTATCC	1 cut(s)	1819
BsuRI	GGCC	5 cut(s)	174, 806, 1376, 1837, 2174
BtgI	CCRYGG	5 cut(s)	376, 1132, 1225, 1914, 2019
BtgZI	GCGATG	1 cut(s)	1866
BtsCI	GGATG	1 cut(s)	433
BtsI	GCAGTG	1 cut(s)	1980
BtsIMutI	CAGTG	6 cut(s)	31, 168, 1060, 1377, 1980, 2157
BtuMI	TCGCGA	1 cut(s)	117
BveI	ACCTGC	2 cut(s)	779, 899
Cac8I	GCNNGC	6 cut(s)	115, 629, 1071, 1662, 1835, 1887
CciI	TCATGA	1 cut(s)	1473
CfoI	GCGC	1 cut(s)	2196
Cfr13I	GGNCC	4 cut(s)	670, 805, 835, 2172
CsiI	ACCWGGT	1 cut(s)	204
Csp6I	GTAC	9 cut(s)	417, 451, 663, 751, 1120, 1213, 1447, 2083, 2168
CspCI	CAANNNNNGTGG	2 cut(s)	395, 430
CviQI	GTAC	9 cut(s)	417, 451, 663, 751, 1120, 1213, 1447, 2083, 2168
DdeI	CTNAG	1 cut(s)	632
DinI	GGCGCC	1 cut(s)	2195
DpnI	GATC	7 cut(s)	128, 546, 699, 843, 1007, 1355, 1472
DpnII	GATC	7 cut(s)	126, 544, 697, 841, 1005, 1353, 1470
DrdI	GACNNNNNNGTC	2 cut(s)	1643, 1744
DseDI	GACNNNNNNGTC	2 cut(s)	1643, 1744
EaeI	YGGCCR	1 cut(s)	1374
Eam1104I	CTCTTC	6 cut(s)	365, 1164, 1188, 1257, 1281, 2015
EarI	CTCTTC	6 cut(s)	365, 1164, 1188, 1257, 1281, 2015
EciI	GGCGGA	1 cut(s)	598
Eco130I	CCWWGG	3 cut(s)	376, 1914, 2019
Eco147I	AGGCCT	1 cut(s)	174
Eco24I	GRGCYC	1 cut(s)	115
Eco31I	GGTCTC	1 cut(s)	344
Eco47I	GGWCC	2 cut(s)	670, 835
Eco57I	CTGAAG	1 cut(s)	701
Eco88I	CYCGRG	1 cut(s)	498
Eco91I	GGTNACC	1 cut(s)	208
EcoNI	CCTNNNNNAGG	1 cut(s)	867
EcoO65I	GGTNACC	1 cut(s)	208
EcoRII	CCWGG	2 cut(s)	204, 1567
EcoT14I	CCWWGG	3 cut(s)	376, 1914, 2019
EcoT22I	ATGCAT	1 cut(s)	302
EcoT38I	GRGCYC	1 cut(s)	115
EgeI	GGCGCC	1 cut(s)	2195
EheI	GGCGCC	1 cut(s)	2195
ErhI	CCWWGG	3 cut(s)	376, 1914, 2019
FalI	AAGNNNNNCTT	4 cut(s)	29, 61, 1667, 1699
FaqI	GGGAC	3 cut(s)	515, 656, 1732
FauI	CCCGC	1 cut(s)	705
FauNDI	CATATG	1 cut(s)	975
FblI	GTMKAC	2 cut(s)	950, 1871
FokI	GGATG	1 cut(s)	420
FriOI	GRGCYC	1 cut(s)	115
FspBI	CTAG	9 cut(s)	89, 170, 176, 197, 548, 788, 855, 1022, 1358
GlaI	GCGC	1 cut(s)	2195
GsaI	CCCAGC	1 cut(s)	1997
GsuI	CTGGAG	1 cut(s)	888
HaeII	RGCGCY	1 cut(s)	2197
HaeIII	GGCC	5 cut(s)	174, 806, 1376, 1837, 2174
HapII	CCGG	2 cut(s)	1808, 2191
HhaI	GCGC	1 cut(s)	2196
Hin1I	GRCGYC	1 cut(s)	2194
Hin6I	GCGC	1 cut(s)	2194
HinP1I	GCGC	1 cut(s)	2194
HindIII	AAGCTT	2 cut(s)	908, 1985
HinfI	GANTC	5 cut(s)	428, 1180, 1273, 1452, 1745
HpaII	CCGG	2 cut(s)	1808, 2191
HphI	GGTGA	6 cut(s)	121, 152, 476, 1120, 1768, 1844
Hpy166II	GTNNAC	6 cut(s)	202, 835, 951, 1447, 1872, 2143
Hpy188I	TCNGA	6 cut(s)	525, 747, 1005, 1712, 1744, 1967
Hpy8I	GTNNAC	6 cut(s)	202, 835, 951, 1447, 1872, 2143
Hpy99I	CGWCG	1 cut(s)	1760
HpyAV	CCTTC	6 cut(s)	403, 615, 622, 676, 1291, 1852
HpyCH4IV	ACGT	2 cut(s)	184, 921
HpyF10VI	GCNNNNNNNGC	6 cut(s)	119, 891, 1491, 1670, 1984, 2191
HpyF3I	CTNAG	1 cut(s)	632
HpySE526I	ACGT	2 cut(s)	184, 921
Hsp92I	GRCGYC	1 cut(s)	2194
HspAI	GCGC	1 cut(s)	2194
KasI	GGCGCC	1 cut(s)	2193
Kzo9I	GATC	7 cut(s)	126, 544, 697, 841, 1005, 1353, 1470
LmnI	GCTCC	6 cut(s)	220, 408, 748, 1426, 1757, 2120
LweI	GCATC	4 cut(s)	42, 379, 783, 1824
MabI	ACCWGGT	1 cut(s)	204
MaeI	CTAG	9 cut(s)	89, 170, 176, 197, 548, 788, 855, 1022, 1358
MaeII	ACGT	2 cut(s)	184, 921
MaeIII	GTNAC	4 cut(s)	140, 208, 1333, 1774
MalI	GATC	7 cut(s)	128, 546, 699, 843, 1007, 1355, 1472
MbiI	CCGCTC	1 cut(s)	712
MboI	GATC	7 cut(s)	126, 544, 697, 841, 1005, 1353, 1470
MflI	RGATCY	3 cut(s)	544, 841, 1353
MhlI	GDGCHC	4 cut(s)	115, 1431, 2117, 2145
MlsI	TGGCCA	1 cut(s)	1376
MluCI	AATT	8 cut(s)	52, 492, 553, 648, 717, 726, 880, 1563
MluNI	TGGCCA	1 cut(s)	1376
Mly113I	GGCGCC	1 cut(s)	2194
MlyI	GAGTC	5 cut(s)	437, 1174, 1267, 1446, 1754
Mox20I	TGGCCA	1 cut(s)	1376
Mph1103I	ATGCAT	1 cut(s)	302
MroXI	GAANNNNTTC	1 cut(s)	1365
MscI	TGGCCA	1 cut(s)	1376
MseI	TTAA	7 cut(s)	552, 561, 720, 729, 1389, 2000, 2067
MslI	CAYNNNNRTG	5 cut(s)	161, 705, 1913, 1937, 2033
Msp20I	TGGCCA	1 cut(s)	1376
MspA1I	CMGCKG	1 cut(s)	1117
MspI	CCGG	2 cut(s)	1808, 2191
MspR9I	CCNGG	3 cut(s)	206, 1569, 1809
Mva1269I	GAATGC	1 cut(s)	302
MvaI	CCWGG	2 cut(s)	206, 1569
MvnI	CGCG	1 cut(s)	117
MwoI	GCNNNNNNNGC	6 cut(s)	119, 891, 1491, 1670, 1984, 2191
NarI	GGCGCC	1 cut(s)	2194
NciI	CCSGG	1 cut(s)	1809
NcoI	CCATGG	3 cut(s)	376, 1914, 2019
NdeI	CATATG	1 cut(s)	975
NdeII	GATC	7 cut(s)	126, 544, 697, 841, 1005, 1353, 1470
NlaIV	GGNNCC	3 cut(s)	404, 744, 2195
NmeAIII	GCCGAG	2 cut(s)	1537, 2004
NmuCI	GTSAC	3 cut(s)	140, 1333, 1774
NruI	TCGCGA	1 cut(s)	117
NsiI	ATGCAT	1 cut(s)	302
NspV	TTCGAA	1 cut(s)	1845
PagI	TCATGA	1 cut(s)	1473
PaqCI	CACCTGC	1 cut(s)	899
PceI	AGGCCT	1 cut(s)	174
PctI	GAATGC	1 cut(s)	302
PdmI	GAANNNNTTC	1 cut(s)	1365
Pfl23II	CGTACG	1 cut(s)	2167
PflMI	CCANNNNNTGG	1 cut(s)	592
PleI	GAGTC	5 cut(s)	436, 1174, 1267, 1446, 1753
PluTI	GGCGCC	1 cut(s)	2197
PpsI	GAGTC	5 cut(s)	436, 1174, 1267, 1446, 1753
PshBI	ATTAAT	1 cut(s)	720
PsiI	TTATAA	1 cut(s)	2160
Psp6I	CCWGG	2 cut(s)	204, 1567
PspEI	GGTNACC	1 cut(s)	208
PspFI	CCCAGC	1 cut(s)	1993
PspGI	CCWGG	2 cut(s)	204, 1567
PspLI	CGTACG	1 cut(s)	2167
PspN4I	GGNNCC	3 cut(s)	404, 744, 2195
PspPI	GGNCC	4 cut(s)	670, 805, 835, 2172
PstI	CTGCAG	1 cut(s)	271
PsuI	RGATCY	3 cut(s)	544, 841, 1353
PvuII	CAGCTG	1 cut(s)	1117
RruI	TCGCGA	1 cut(s)	117
RsaI	GTAC	9 cut(s)	418, 452, 664, 752, 1121, 1214, 1448, 2084, 2169
RsaNI	GTAC	9 cut(s)	417, 451, 663, 751, 1120, 1213, 1447, 2083, 2168
RseI	CAYNNNNRTG	5 cut(s)	161, 705, 1913, 1937, 2033
SaqAI	TTAA	7 cut(s)	552, 561, 720, 729, 1389, 2000, 2067
Sau3AI	GATC	7 cut(s)	126, 544, 697, 841, 1005, 1353, 1470
Sau96I	GGNCC	4 cut(s)	670, 805, 835, 2172
ScaI	AGTACT	1 cut(s)	452
SchI	GAGTC	5 cut(s)	437, 1174, 1267, 1446, 1754
ScrFI	CCNGG	3 cut(s)	206, 1569, 1809
SduI	GDGCHC	4 cut(s)	115, 1431, 2117, 2145
SexAI	ACCWGGT	1 cut(s)	204
SfaNI	GCATC	4 cut(s)	42, 379, 783, 1824
SfcI	CTRYAG	3 cut(s)	267, 454, 2121
SfoI	GGCGCC	1 cut(s)	2195
SfuI	TTCGAA	1 cut(s)	1845
SinI	GGWCC	2 cut(s)	670, 835
SmiMI	CAYNNNNRTG	5 cut(s)	161, 705, 1913, 1937, 2033
SpeI	ACTAGT	1 cut(s)	196
Sse9I	AATT	8 cut(s)	52, 492, 553, 648, 717, 726, 880, 1563
SseBI	AGGCCT	1 cut(s)	174
SsiI	CCGC	3 cut(s)	609, 712, 1067
SspDI	GGCGCC	1 cut(s)	2193
SspI	AATATT	1 cut(s)	1083
SspMI	CTAG	9 cut(s)	89, 170, 176, 197, 548, 788, 855, 1022, 1358
StuI	AGGCCT	1 cut(s)	174
StyD4I	CCNGG	3 cut(s)	204, 1567, 1807
StyI	CCWWGG	3 cut(s)	376, 1914, 2019
TaiI	ACGT	2 cut(s)	187, 924
TaqI	TCGA	2 cut(s)	1034, 1845
TaqII	GACCGA	1 cut(s)	1703
TasI	AATT	8 cut(s)	52, 492, 553, 648, 717, 726, 880, 1563
TatI	WGTACW	5 cut(s)	416, 450, 662, 1119, 1212
TauI	GCSGC	1 cut(s)	1069
Tru1I	TTAA	7 cut(s)	552, 561, 720, 729, 1389, 2000, 2067
Tru9I	TTAA	7 cut(s)	552, 561, 720, 729, 1389, 2000, 2067
TscAI	CASTG	6 cut(s)	31, 168, 1060, 1377, 1980, 2157
TseFI	GTSAC	3 cut(s)	140, 1333, 1774
Tsp45I	GTSAC	3 cut(s)	140, 1333, 1774
TspDTI	ATGAA	7 cut(s)	77, 579, 992, 1056, 1062, 1076, 1116
TspGWI	ACGGA	2 cut(s)	968, 1744
TspRI	CASTG	6 cut(s)	31, 168, 1060, 1377, 1980, 2157
Van91I	CCANNNNNTGG	1 cut(s)	592
VneI	GTGCAC	1 cut(s)	2141
VpaK11BI	GGWCC	2 cut(s)	670, 835
VspI	ATTAAT	1 cut(s)	720
XagI	CCTNNNNNAGG	1 cut(s)	867
XapI	RAATTY	1 cut(s)	1563
XmiI	GTMKAC	2 cut(s)	950, 1871
XmnI	GAANNNNTTC	1 cut(s)	1365
XspI	CTAG	9 cut(s)	89, 170, 176, 197, 548, 788, 855, 1022, 1358
ZrmI	AGTACT	1 cut(s)	452
Zsp2I	ATGCAT	1 cut(s)	302

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.