Rorug06G0321000

Protein present in Fab1, YOTB, Vac1, and EEA1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0001158
Physical Location & Seq
Reverse (-)
47270291 .. 47271846
1556 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0321000.1

Sequence Viewer

Length: 927 bp
ATGGCATCTGTTTTTGATGAAGGAAAGTTCCCCATCAAATTCATTACAGAGGAAACTCCATTTTCTTCCTGTTTCGATTCCTCAGCCCCTCCAAAGCCATTGTTAATTGCGACACCAACTGTAAGCGGCACTTATCCAGTACTCTTGCTTCTTCATGGCTTCTACCTCCGCAACTACTTCTACAAAGGAATACTCCAACACATAGCCTCTCATGGATTCATAGTAGTTGGACCTCAGTTATATAGCTTGGTGCCTGCAACTGGACCTGAAGAAATTGAATCAGCTGCAAAAGTGGTAAACTGGTTACCAGAAGGCCTTCAATCTCTTCTGCCTGAAAATGTTGTCGCGGACTTGACCAAATTTGCTCTGTCAGGCCACAGTAGAGGTGGCAAAGCAGCATTTGCATTAGCACTTGGATATGCCAAAGCTGCTTTGTCCCTCAAAGTTTCAGTGCTAATTGGGATTGACCCTGTCGCAGGCGCCAACCAATATTGCAGAACTAATCCCCACATCCTCACCTATGTCCCTCGCTCTTTCGACCTGAATATTCCCGTCGCGGTAATTGGCACTGGCCTTGGACCGGAAAAGAAGAACGATTGCATGTCGCAACCGTGTGCTCCCGAGGGTTTGAACCACAAGGAGTTCTTCAACGAGAGCAAACCCCCATGTGCACATTTTGTGGCCAAGGACTATGGTCACATGGACATGTTGGACGACGATCTACCGGGCGTGGTTGGAGCAATGTCGGGATGTATGTGCAAAAATGGAAGCGGTCCGAAGGACCTAATGAGGAAGTCTGTGGGCGGAATTGTTGTGGCTTTTTTGAATGCATATTTGAATGGTGAAGATGGAGATCTTCTTGCTATTATAGCTGATCCTGCTCTTTCTCCCGCAAAGCTTGAACCTGTGGAGTTCATCAATGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FYVE PTB

Protein Analysis

308

Amino Acids

32.84

Weight (kDa)

5.6

Isoelectric Point (pI)

48.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Chlorophyllase PF07224 2 - 306 1.8e-133 Chlorophyllase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 250, 479
AccII CGCG 2 cut(s) 347, 557
AciI CCGC 7 cut(s) 126, 169, 347, 557, 771, 804, 891
AclWI GGATC 1 cut(s) 869
AcoI YGGCCR 1 cut(s) 681
AcsI RAATTY 2 cut(s) 38, 359
AcuI CTGAAG 1 cut(s) 288
AcyI GRCGYC 1 cut(s) 480
AfaI GTAC 1 cut(s) 141
AfiI CCNNNNNNNGG 3 cut(s) 260, 476, 580
AflIII ACRYGT 1 cut(s) 705
AgsI TTSAA 7 cut(s) 278, 320, 631, 649, 826, 838, 902
AluBI AGCT 5 cut(s) 246, 284, 428, 872, 898
AluI AGCT 5 cut(s) 246, 284, 428, 872, 898
Alw21I GWGCWC 2 cut(s) 619, 673
Alw44I GTGCAC 1 cut(s) 669
AlwI GGATC 1 cut(s) 869
Ama87I CYCGRG 1 cut(s) 620
AoxI GGCC 4 cut(s) 313, 373, 571, 681
ApaLI GTGCAC 1 cut(s) 669
ApeKI GCWGC 3 cut(s) 284, 395, 428
ApoI RAATTY 2 cut(s) 38, 359
Asp700I GAANNNNTTC 1 cut(s) 315
AspLEI GCGC 1 cut(s) 482
AspS9I GGNCC 5 cut(s) 230, 263, 578, 773, 781
AsuC2I CCSGG 1 cut(s) 726
AsuHPI GGTGA 2 cut(s) 508, 854
AvaI CYCGRG 1 cut(s) 620
AvaII GGWCC 5 cut(s) 230, 263, 578, 773, 781
BaeGI GKGCMC 1 cut(s) 673
BalI TGGCCA 1 cut(s) 683
BanI GGYRCC 2 cut(s) 250, 479
BarI GAAGNNNNNNTAC 2 cut(s) 132, 164
Bbv12I GWGCWC 2 cut(s) 619, 673
BbvCI CCTCAGC 1 cut(s) 82
BbvI GCAGC 3 cut(s) 271, 407, 415
BccI CCATC 2 cut(s) 41, 842
BcnI CCSGG 1 cut(s) 726
BfoI RGCGCY 1 cut(s) 483
BglII AGATCT 1 cut(s) 853
BisI GCNGC 4 cut(s) 127, 285, 396, 429
BlsI GCNGC 4 cut(s) 128, 286, 397, 430
BmcAI AGTACT 1 cut(s) 141
Bme1390I CCNGG 1 cut(s) 726
Bme18I GGWCC 5 cut(s) 230, 263, 578, 773, 781
BmeT110I CYCGRG 1 cut(s) 620
BmgT120I GGNCC 5 cut(s) 230, 263, 578, 773, 781
BmiI GGNNCC 2 cut(s) 252, 481
BmrFI CCNGG 1 cut(s) 726
BmsI GCATC 1 cut(s) 14
BoxI GACNNNNGTC 1 cut(s) 693
Bpu10I CCTNAGC 1 cut(s) 82
BpuMI CCSGG 1 cut(s) 726
BsaBI GATNNNNATC 1 cut(s) 852
BsaHI GRCGYC 1 cut(s) 480
BsaJI CCNNGG 3 cut(s) 574, 621, 684
BsaWI WCCGGW 1 cut(s) 580
Bsc4I CCNNNNNNNGG 3 cut(s) 260, 476, 580
Bse1I ACTGG 4 cut(s) 137, 265, 305, 574
Bse3DI GCAATG 1 cut(s) 747
Bse8I GATNNNNATC 1 cut(s) 852
BseDI CCNNGG 3 cut(s) 574, 621, 684
BseGI GGATG 2 cut(s) 510, 755
BseJI GATNNNNATC 1 cut(s) 852
BseLI CCNNNNNNNGG 3 cut(s) 260, 476, 580
BseMI GCAATG 1 cut(s) 747
BseMII CTCAG 2 cut(s) 96, 248
BseNI ACTGG 4 cut(s) 137, 265, 305, 574
BseSI GKGCMC 1 cut(s) 673
BseXI GCAGC 3 cut(s) 271, 407, 415
Bsh1236I CGCG 2 cut(s) 347, 557
BshFI GGCC 4 cut(s) 315, 375, 573, 683
BshNI GGYRCC 2 cut(s) 250, 479
BsiHKAI GWGCWC 2 cut(s) 619, 673
BsiHKCI CYCGRG 1 cut(s) 620
BsiSI CCGG 2 cut(s) 581, 725
BslFI GGGAC 2 cut(s) 421, 509
BslI CCNNNNNNNGG 3 cut(s) 260, 476, 580
BsmFI GGGAC 2 cut(s) 421, 509
BsmI GAATGC 1 cut(s) 832
BsnI GGCC 4 cut(s) 315, 375, 573, 683
BsoBI CYCGRG 1 cut(s) 620
Bsp1286I GDGCHC 2 cut(s) 619, 673
Bsp143I GATC 3 cut(s) 718, 853, 874
BspACI CCGC 7 cut(s) 126, 169, 347, 557, 771, 804, 891
BspANI GGCC 4 cut(s) 315, 375, 573, 683
BspCNI CTCAG 2 cut(s) 95, 247
BspFNI CGCG 2 cut(s) 347, 557
BspLI GGNNCC 2 cut(s) 252, 481
BspPI GGATC 1 cut(s) 869
BspT107I GGYRCC 2 cut(s) 250, 479
BsrDI GCAATG 1 cut(s) 747
BsrI ACTGG 4 cut(s) 137, 265, 305, 574
BssECI CCNNGG 3 cut(s) 574, 621, 684
BssMI GATC 3 cut(s) 718, 853, 874
BssNI GRCGYC 1 cut(s) 480
BssT1I CCWWGG 2 cut(s) 574, 684
Bst4CI ACNGT 3 cut(s) 121, 380, 612
Bst6I CTCTTC 1 cut(s) 330
BstACI GRCGYC 1 cut(s) 480
BstAPI GCANNNNNTGC 1 cut(s) 401
BstC8I GCNNGC 2 cut(s) 255, 478
BstDEI CTNAG 2 cut(s) 82, 234
BstEII GGTNACC 1 cut(s) 303
BstENI CCTNNNNNAGG 1 cut(s) 474
BstF5I GGATG 2 cut(s) 510, 755
BstFNI CGCG 2 cut(s) 347, 557
BstH2I RGCGCY 1 cut(s) 483
BstHHI GCGC 1 cut(s) 482
BstKTI GATC 3 cut(s) 721, 856, 877
BstMBI GATC 3 cut(s) 718, 853, 874
BstMWI GCNNNNNNNGC 4 cut(s) 401, 428, 869, 878
BstNSI RCATGY 2 cut(s) 604, 709
BstPAI GACNNNNGTC 1 cut(s) 693
BstPI GGTNACC 1 cut(s) 303
BstSCI CCNGG 1 cut(s) 724
BstSLI GKGCMC 1 cut(s) 673
BstUI CGCG 2 cut(s) 347, 557
BstV1I GCAGC 3 cut(s) 271, 407, 415
BstX2I RGATCY 1 cut(s) 853
BstYI RGATCY 1 cut(s) 853
BsuRI GGCC 4 cut(s) 315, 375, 573, 683
BtsCI GGATG 2 cut(s) 510, 755
BtsIMutI CAGTG 2 cut(s) 456, 567
Cac8I GCNNGC 2 cut(s) 255, 478
CfoI GCGC 1 cut(s) 482
Cfr13I GGNCC 5 cut(s) 230, 263, 578, 773, 781
CpoI CGGWCCG 1 cut(s) 773
Csp6I GTAC 1 cut(s) 140
CspI CGGWCCG 1 cut(s) 773
CviAII CATG 6 cut(s) 155, 212, 601, 666, 700, 706
CviQI GTAC 1 cut(s) 140
DdeI CTNAG 2 cut(s) 82, 234
DinI GGCGCC 1 cut(s) 481
DpnI GATC 3 cut(s) 720, 855, 876
DpnII GATC 3 cut(s) 718, 853, 874
EaeI YGGCCR 1 cut(s) 681
Eam1104I CTCTTC 1 cut(s) 330
EarI CTCTTC 1 cut(s) 330
EciI GGCGGA 1 cut(s) 819
Eco130I CCWWGG 2 cut(s) 574, 684
Eco147I AGGCCT 1 cut(s) 315
Eco47I GGWCC 5 cut(s) 230, 263, 578, 773, 781
Eco57I CTGAAG 1 cut(s) 288
Eco88I CYCGRG 1 cut(s) 620
Eco91I GGTNACC 1 cut(s) 303
EcoNI CCTNNNNNAGG 1 cut(s) 474
EcoO109I RGGNCCY 1 cut(s) 781
EcoO65I GGTNACC 1 cut(s) 303
EcoT14I CCWWGG 2 cut(s) 574, 684
EcoT22I ATGCAT 2 cut(s) 832, 925
EgeI GGCGCC 1 cut(s) 481
EheI GGCGCC 1 cut(s) 481
ErhI CCWWGG 2 cut(s) 574, 684
FaeI CATG 6 cut(s) 158, 215, 604, 669, 703, 709
FalI AAGNNNNNCTT 4 cut(s) 115, 147, 629, 661
FaqI GGGAC 2 cut(s) 421, 509
FatI CATG 6 cut(s) 154, 211, 600, 665, 699, 705
FauI CCCGC 1 cut(s) 898
Fnu4HI GCNGC 4 cut(s) 127, 285, 396, 429
FokI GGATG 2 cut(s) 497, 762
Fsp4HI GCNGC 4 cut(s) 127, 285, 396, 429
GlaI GCGC 1 cut(s) 481
GluI GCNGC 4 cut(s) 127, 285, 396, 429
HaeII RGCGCY 1 cut(s) 483
HaeIII GGCC 4 cut(s) 315, 375, 573, 683
HapII CCGG 2 cut(s) 581, 725
HhaI GCGC 1 cut(s) 482
Hin1I GRCGYC 1 cut(s) 480
Hin1II CATG 6 cut(s) 158, 215, 604, 669, 703, 709
Hin6I GCGC 1 cut(s) 480
HinP1I GCGC 1 cut(s) 480
HindIII AAGCTT 1 cut(s) 896
HinfI GANTC 3 cut(s) 77, 216, 278
HpaII CCGG 2 cut(s) 581, 725
HphI GGTGA 2 cut(s) 508, 854
Hpy166II GTNNAC 2 cut(s) 298, 671
Hpy188I TCNGA 1 cut(s) 777
Hpy188III TCNNGA 2 cut(s) 620, 747
Hpy8I GTNNAC 2 cut(s) 298, 671
Hpy99I CGWCG 2 cut(s) 557, 719
HpyAV CCTTC 4 cut(s) 14, 305, 326, 772
HpyCH4III ACNGT 3 cut(s) 121, 380, 612
HpyCH4V TGCA 9 cut(s) 257, 287, 404, 495, 600, 671, 759, 830, 923
HpyF10VI GCNNNNNNNGC 4 cut(s) 401, 428, 869, 878
HpyF3I CTNAG 2 cut(s) 82, 234
Hsp92I GRCGYC 1 cut(s) 480
Hsp92II CATG 6 cut(s) 158, 215, 604, 669, 703, 709
HspAI GCGC 1 cut(s) 480
KasI GGCGCC 1 cut(s) 479
Kzo9I GATC 3 cut(s) 718, 853, 874
LmnI GCTCC 2 cut(s) 622, 737
Lsp1109I GCAGC 3 cut(s) 271, 407, 415
LweI GCATC 1 cut(s) 14
MaeIII GTNAC 2 cut(s) 303, 695
MalI GATC 3 cut(s) 720, 855, 876
MboI GATC 3 cut(s) 718, 853, 874
MboII GAAGA 8 cut(s) 57, 143, 281, 317, 601, 637, 848, 857
MflI RGATCY 1 cut(s) 853
MhlI GDGCHC 2 cut(s) 619, 673
MlsI TGGCCA 1 cut(s) 683
MluCI AATT 7 cut(s) 38, 105, 273, 359, 456, 561, 807
MluNI TGGCCA 1 cut(s) 683
Mly113I GGCGCC 1 cut(s) 480
MmeI TCCRAC 4 cut(s) 208, 220, 690, 715
Mox20I TGGCCA 1 cut(s) 683
Mph1103I ATGCAT 2 cut(s) 832, 925
MroXI GAANNNNTTC 1 cut(s) 315
MscI TGGCCA 1 cut(s) 683
MseI TTAA 1 cut(s) 104
MslI CAYNNNNRTG 1 cut(s) 704
Msp20I TGGCCA 1 cut(s) 683
MspA1I CMGCKG 1 cut(s) 284
MspI CCGG 2 cut(s) 581, 725
MspR9I CCNGG 1 cut(s) 726
Mva1269I GAATGC 1 cut(s) 832
MvnI CGCG 2 cut(s) 347, 557
MwoI GCNNNNNNNGC 4 cut(s) 401, 428, 869, 878
NarI GGCGCC 1 cut(s) 480
NciI CCSGG 1 cut(s) 726
NdeII GATC 3 cut(s) 718, 853, 874
NlaIII CATG 6 cut(s) 158, 215, 604, 669, 703, 709
NlaIV GGNNCC 2 cut(s) 252, 481
NmuCI GTSAC 1 cut(s) 695
NsiI ATGCAT 2 cut(s) 832, 925
NspI RCATGY 2 cut(s) 604, 709
PceI AGGCCT 1 cut(s) 315
PciI ACATGT 1 cut(s) 705
PctI GAATGC 1 cut(s) 832
PdmI GAANNNNTTC 1 cut(s) 315
PfeI GAWTC 3 cut(s) 77, 216, 278
PflFI GACNNNGTC 1 cut(s) 470
PkrI GCNGC 4 cut(s) 128, 286, 397, 430
PluTI GGCGCC 1 cut(s) 483
PpuMI RGGWCCY 1 cut(s) 781
PscI ACATGT 1 cut(s) 705
PshAI GACNNNNGTC 1 cut(s) 693
Psp5II RGGWCCY 1 cut(s) 781
PspEI GGTNACC 1 cut(s) 303
PspN4I GGNNCC 2 cut(s) 252, 481
PspPI GGNCC 5 cut(s) 230, 263, 578, 773, 781
PspPPI RGGWCCY 1 cut(s) 781
PsuI RGATCY 1 cut(s) 853
PsyI GACNNNGTC 1 cut(s) 470
PvuII CAGCTG 1 cut(s) 284
RsaI GTAC 1 cut(s) 141
RsaNI GTAC 1 cut(s) 140
RseI CAYNNNNRTG 1 cut(s) 704
Rsr2I CGGWCCG 1 cut(s) 773
RsrII CGGWCCG 1 cut(s) 773
SaqAI TTAA 1 cut(s) 104
SatI GCNGC 4 cut(s) 127, 285, 396, 429
Sau3AI GATC 3 cut(s) 718, 853, 874
Sau96I GGNCC 5 cut(s) 230, 263, 578, 773, 781
ScaI AGTACT 1 cut(s) 141
ScrFI CCNGG 1 cut(s) 726
SduI GDGCHC 2 cut(s) 619, 673
SfaNI GCATC 1 cut(s) 14
SfoI GGCGCC 1 cut(s) 481
SinI GGWCC 5 cut(s) 230, 263, 578, 773, 781
SmiMI CAYNNNNRTG 1 cut(s) 704
Sse9I AATT 7 cut(s) 38, 105, 273, 359, 456, 561, 807
SseBI AGGCCT 1 cut(s) 315
SsiI CCGC 7 cut(s) 126, 169, 347, 557, 771, 804, 891
SspDI GGCGCC 1 cut(s) 479
SspI AATATT 2 cut(s) 491, 547
StuI AGGCCT 1 cut(s) 315
StyD4I CCNGG 1 cut(s) 724
StyI CCWWGG 2 cut(s) 574, 684
TaaI ACNGT 3 cut(s) 121, 380, 612
TaqI TCGA 2 cut(s) 75, 537
TasI AATT 7 cut(s) 38, 105, 273, 359, 456, 561, 807
TatI WGTACW 1 cut(s) 139
TauI GCSGC 1 cut(s) 129
TfiI GAWTC 3 cut(s) 77, 216, 278
Tru1I TTAA 1 cut(s) 104
Tru9I TTAA 1 cut(s) 104
TscAI CASTG 2 cut(s) 456, 574
TseFI GTSAC 1 cut(s) 695
TseI GCWGC 3 cut(s) 284, 395, 428
Tsp45I GTSAC 1 cut(s) 695
TspDTI ATGAA 5 cut(s) 31, 33, 143, 208, 904
TspRI CASTG 2 cut(s) 456, 574
Tth111I GACNNNGTC 1 cut(s) 470
VneI GTGCAC 1 cut(s) 669
VpaK11BI GGWCC 5 cut(s) 230, 263, 578, 773, 781
XagI CCTNNNNNAGG 1 cut(s) 474
XapI RAATTY 2 cut(s) 38, 359
XceI RCATGY 2 cut(s) 604, 709
XcmI CCANNNNNNNNNTGG 1 cut(s) 383
XmnI GAANNNNTTC 1 cut(s) 315
ZrmI AGTACT 1 cut(s) 141
Zsp2I ATGCAT 2 cut(s) 832, 925
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.