Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0001158

Physical Location & Seq

Genomic Coordinates Reverse (-)

626782 .. 627447

Gene Structure 666 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom08g00820.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 483 bp

ATGGTCAAATATGCCTCTGATTTCATCAAGGACTTATATGGCTTGGGGGTACGAAGAATAGCCGTACTAAGCATACCACCAATTGGATGTGTGCCATCTCAACGAACAGTAAAAGGAGGCATAGGAAGAGATTGTGACGAAGCACAAAATCAAGCATCCCAGCTGTTCAACTCCAAGCTCTCTGCGGAGATGGACAGCCTTCAGAAAAACCTGCCAAACTCAAGAGTTGCCTACGTTGACATGTACAATATGATACTTGATCTCATCACAAACCCTGCTAAACACGGGTTTGAAGTTGTGAACAAAGGTTGTTGTGGTACTGGCCTTATTGAAGTAACAAAACTGTGCAACCAGCTCCAACCTGCCGGGGTCTGCACAGATGACTCTAAATATTTTTTTTGGGACAGCTACCATCCTACCGAAAGAGCGTACAAGATCATTGTGAATCAAATGCTCGACAAATATGCCAGCCGCTTCTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lipase_GDSL

Protein Analysis

161

Amino Acids

17.93

Weight (kDa)

8.18

Isoelectric Point (pI)

37.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001158)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G58520 AT1G58525 AT1G58725 AT1G59030 AT1G59406 AT1G75880 AT1G75880 AT1G75890 AT1G75890 AT1G75890 AT1G75900 AT3G14820 AT3G43550 AT3G43570 AT5G42170
fragaria_vesca	FvH4_2g38112 FvH4_2g38120
malus_domestica	MD08G1009700.v1.1 MD08G1009800.v1.1 MD15G1008800.v1.1 MD15G1008900.v1.1 MD15G1009000.v1.1 MD15G1009100.v1.1 MD15G1009500.v1.1 MD15G1009600.v1.1
prunus_persica	Prupe.1G361800_v2.0.a1 Prupe.1G361800_v2.0.a1 Prupe.1G361900_v2.0.a1 Prupe.1G361900_v2.0.a1 Prupe.1G361900_v2.0.a1 Prupe.1G361900_v2.0.a1 Prupe.1G362000_v2.0.a1 Prupe.1G362100_v2.0.a1
pyrus_communis	pycom08g00820 pycom08g00830 pycom15g00730 pycom15g00740 pycom15g00750 pycom15g00760 pycom15g00770
rosa_chinensis	RchiOBHm_Chr6g0303381 RchiOBHm_Chr6g0303411
rosa_laevigata	RLG00000011087 RLG00000011088
rosa_multiflora	Rmu_sc0002586.1_g000041 Rmu_ssc0000114.1_g000055 Rmu_ssc0000114.1_g000059
rosa_roxburghii	Rroxscaffold_7G00164790 Rroxscaffold_7G00164830
rosa_rugosa	Rorug06G0321000
rosa_samantha	Rh6AG435300 Rh6AG435400 Rh6CG447300 Rh6CG447500 Rh6DG434100 Rh6DG434200
rosa_wichuraiana	Rw6G037690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	219, 370
AccB7I	CCANNNNNTGG	1 cut(s)	83
AciI	CCGC	2 cut(s)	185, 472
AcuI	CTGAAG	1 cut(s)	185
AfaI	GTAC	5 cut(s)	51, 66, 245, 319, 431
AfiI	CCNNNNNNNGG	1 cut(s)	83
AflIII	ACRYGT	1 cut(s)	240
AgsI	TTSAA	3 cut(s)	169, 293, 332
AluBI	AGCT	4 cut(s)	163, 178, 355, 408
AluI	AGCT	4 cut(s)	163, 178, 355, 408
AoxI	GGCC	1 cut(s)	322
AsuC2I	CCSGG	1 cut(s)	367
BccI	CCATC	3 cut(s)	103, 184, 420
BceAI	ACGGC	1 cut(s)	47
BcgI	CGANNNNNNTGC	2 cut(s)	446, 480
BcnI	CCSGG	1 cut(s)	367
BfuAI	ACCTGC	2 cut(s)	219, 370
BisI	GCNGC	1 cut(s)	472
BlsI	GCNGC	1 cut(s)	473
Bme1390I	CCNGG	1 cut(s)	367
BmrFI	CCNGG	1 cut(s)	367
BmsI	GCATC	1 cut(s)	164
BpuEI	CTTGAG	1 cut(s)	205
BpuMI	CCSGG	1 cut(s)	367
BsaJI	CCNNGG	1 cut(s)	366
Bsc4I	CCNNNNNNNGG	1 cut(s)	83
Bse1I	ACTGG	1 cut(s)	325
BseDI	CCNNGG	1 cut(s)	366
BseGI	GGATG	3 cut(s)	92, 155, 412
BseLI	CCNNNNNNNGG	1 cut(s)	83
BseNI	ACTGG	1 cut(s)	325
BseYI	CCCAGC	1 cut(s)	159
BsgI	GTGCAG	1 cut(s)	358
BshFI	GGCC	1 cut(s)	324
BsiSI	CCGG	1 cut(s)	366
BslFI	GGGAC	1 cut(s)	416
BslI	CCNNNNNNNGG	1 cut(s)	83
BsmFI	GGGAC	1 cut(s)	416
BsnI	GGCC	1 cut(s)	324
Bsp1407I	TGTACA	1 cut(s)	243
Bsp143I	GATC	2 cut(s)	259, 435
BspACI	CCGC	2 cut(s)	185, 472
BspANI	GGCC	1 cut(s)	324
BspMI	ACCTGC	2 cut(s)	219, 370
BsrGI	TGTACA	1 cut(s)	243
BsrI	ACTGG	1 cut(s)	325
BssECI	CCNNGG	1 cut(s)	366
BssMI	GATC	2 cut(s)	259, 435
Bst4CI	ACNGT	2 cut(s)	109, 345
Bst6I	CTCTTC	1 cut(s)	121
BstAUI	TGTACA	1 cut(s)	243
BstC8I	GCNNGC	1 cut(s)	469
BstDEI	CTNAG	1 cut(s)	68
BstF5I	GGATG	3 cut(s)	92, 155, 412
BstKTI	GATC	2 cut(s)	262, 438
BstMBI	GATC	2 cut(s)	259, 435
BstNSI	RCATGY	1 cut(s)	244
BstSCI	CCNGG	1 cut(s)	365
BsuRI	GGCC	1 cut(s)	324
BtsCI	GGATG	3 cut(s)	92, 155, 412
BveI	ACCTGC	2 cut(s)	219, 370
Cac8I	GCNNGC	1 cut(s)	469
Csp6I	GTAC	5 cut(s)	50, 65, 244, 318, 430
CviAII	CATG	1 cut(s)	241
CviJI	RGCY	9 cut(s)	42, 62, 163, 178, 198, 324, 355, 408, 471
CviKI_1	RGCY	9 cut(s)	42, 62, 163, 178, 198, 324, 355, 408, 471
CviQI	GTAC	5 cut(s)	50, 65, 244, 318, 430
DdeI	CTNAG	1 cut(s)	68
DpnI	GATC	2 cut(s)	261, 437
DpnII	GATC	2 cut(s)	259, 435
Eam1104I	CTCTTC	1 cut(s)	121
EarI	CTCTTC	1 cut(s)	121
Eco57I	CTGAAG	1 cut(s)	185
FaeI	CATG	1 cut(s)	244
FaiI	YATR	8 cut(s)	12, 37, 39, 74, 122, 242, 251, 465
FaqI	GGGAC	1 cut(s)	416
FatI	CATG	1 cut(s)	240
Fnu4HI	GCNGC	1 cut(s)	472
FokI	GGATG	3 cut(s)	99, 142, 399
Fsp4HI	GCNGC	1 cut(s)	472
GluI	GCNGC	1 cut(s)	472
GsaI	CCCAGC	1 cut(s)	163
HaeIII	GGCC	1 cut(s)	324
HapII	CCGG	1 cut(s)	366
Hin1II	CATG	1 cut(s)	244
HincII	GTYRAC	1 cut(s)	238
HindII	GTYRAC	1 cut(s)	238
HinfI	GANTC	2 cut(s)	383, 445
HpaII	CCGG	1 cut(s)	366
Hpy166II	GTNNAC	2 cut(s)	238, 301
Hpy188I	TCNGA	2 cut(s)	19, 204
Hpy188III	TCNNGA	1 cut(s)	222
Hpy8I	GTNNAC	2 cut(s)	238, 301
HpyAV	CCTTC	1 cut(s)	209
HpyCH4III	ACNGT	2 cut(s)	109, 345
HpyCH4IV	ACGT	1 cut(s)	234
HpyCH4V	TGCA	2 cut(s)	348, 375
HpyF3I	CTNAG	1 cut(s)	68
HpySE526I	ACGT	1 cut(s)	234
Hsp92II	CATG	1 cut(s)	244
Kzo9I	GATC	2 cut(s)	259, 435
LmnI	GCTCC	1 cut(s)	360
LpnPI	CCDG	7 cut(s)	173, 224, 288, 306, 365, 375, 379
LweI	GCATC	1 cut(s)	164
MaeII	ACGT	1 cut(s)	234
MaeIII	GTNAC	2 cut(s)	134, 334
MalI	GATC	2 cut(s)	261, 437
MboI	GATC	2 cut(s)	259, 435
MboII	GAAGA	2 cut(s)	66, 138
MfeI	CAATTG	1 cut(s)	81
MluCI	AATT	1 cut(s)	81
MlyI	GAGTC	1 cut(s)	377
MmeI	TCCRAC	1 cut(s)	382
MnlI	CCTC	2 cut(s)	25, 110
MspA1I	CMGCKG	1 cut(s)	163
MspI	CCGG	1 cut(s)	366
MspR9I	CCNGG	1 cut(s)	367
MunI	CAATTG	1 cut(s)	81
NciI	CCSGG	1 cut(s)	367
NdeII	GATC	2 cut(s)	259, 435
NlaIII	CATG	1 cut(s)	244
NmuCI	GTSAC	1 cut(s)	134
NspI	RCATGY	1 cut(s)	244
PciI	ACATGT	1 cut(s)	240
PfeI	GAWTC	1 cut(s)	445
PflMI	CCANNNNNTGG	1 cut(s)	83
PkrI	GCNGC	1 cut(s)	473
PleI	GAGTC	1 cut(s)	377
PpsI	GAGTC	1 cut(s)	377
PscI	ACATGT	1 cut(s)	240
PspFI	CCCAGC	1 cut(s)	159
PvuII	CAGCTG	1 cut(s)	163
RsaI	GTAC	5 cut(s)	51, 66, 245, 319, 431
RsaNI	GTAC	5 cut(s)	50, 65, 244, 318, 430
SatI	GCNGC	1 cut(s)	472
Sau3AI	GATC	2 cut(s)	259, 435
SchI	GAGTC	1 cut(s)	377
ScrFI	CCNGG	1 cut(s)	367
SetI	ASST	8 cut(s)	165, 180, 213, 237, 310, 357, 364, 410
SfaNI	GCATC	1 cut(s)	164
SmlI	CTYRAG	1 cut(s)	220
SmoI	CTYRAG	1 cut(s)	220
Sse9I	AATT	1 cut(s)	81
SsiI	CCGC	2 cut(s)	185, 472
SspI	AATATT	1 cut(s)	392
StyD4I	CCNGG	1 cut(s)	365
TaaI	ACNGT	2 cut(s)	109, 345
TaiI	ACGT	1 cut(s)	237
TaqI	TCGA	1 cut(s)	456
TasI	AATT	1 cut(s)	81
TatI	WGTACW	1 cut(s)	243
TauI	GCSGC	1 cut(s)	474
TfiI	GAWTC	1 cut(s)	445
TseFI	GTSAC	1 cut(s)	134
Tsp45I	GTSAC	1 cut(s)	134
TspDTI	ATGAA	1 cut(s)	13
Van91I	CCANNNNNTGG	1 cut(s)	83
XceI	RCATGY	1 cut(s)	244

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.