Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0001158

Physical Location & Seq

Genomic Coordinates Reverse (-)

6749695 .. 6751682

Gene Structure 1988 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00164830.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 939 bp

ATGAGCTTAAAAACCAACATTTGTCACTTATTCTCTTGTATGCTTCCTCTTTGGACCAGAGGAAATTCCAAAAGAATGGGATTCCTCTTTATAGAAACCTTCTCTTCTTCTTCTTCTTCCTCTGGTTCCATAATGTTGTCTTCGAAGCAGCTCTTGATACTTGTTTGTAGTCTTGCTGTGGTTTTAGGGCAGTACCCCAGAATCACAGAGGGTCGGGTGAATATACCACCAGGAAAGTCAGTGCCGGCGGTTATAGTGTTCGGTGACTCGATCATGGACACCGGCAACAATAACAATCTTAAGTCTGCTGTTAAATGCAATTTCCCTCCATATGGTGAAAATTTCCCAGGAAAAGTTCCGACCGGTAGATTTGGCAATGGAAAAGTCCCCTCAGACTTCATAGGTGGCACCGGATATGACCCTCAGACCCCCGAATTAGTAGCAGTTATATCGCTATCGGAGCAGTTAAACATGTTCAAGGAGTATATAGGGAAGCTGAAAGCCAATTTTGGCGAGCAGAGAACAAACTTCATCCTCGCCAACAGTCTCTTCCTGGTGGTCGCCGGTAGCGATGACATTGCCAACACCTATTTCACTATTGGCATCAGAAAGGCAGAATATGACGTCCCTGCTTACACTGACCTTATGGTCAACTCTGCCACTAGTTTCCTTCAGGATTTGTATGCACTTGGGGCTAGAAGGTTCGGTGTTTTCAGTGCACCACCGATAGGGTGTGTACCTTCACAAAGAACTCTAGGTGGAGGAATACAAAGACAGTGTGCAGAAGAGTACAACGACGCAGCGAAGCTATTCAACTCTAAGCTGTCGTCCAACATGAAGTCCTTGAATACAAAGCTGCCCGACAGTAGAATGGTTTATATCGATGTTTACACCCCTCTATTTGATGTCATTCTTCACCCTGCCAAATACGGTAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lipase_GDSL

Protein Analysis

312

Amino Acids

34.04

Weight (kDa)

9.03

Isoelectric Point (pI)

38.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lipase_GDSL	PF00657	84 - 299	6.5e-18	GDSL-like Lipase/Acylhydrolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001158)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G58520 AT1G58525 AT1G58725 AT1G59030 AT1G59406 AT1G75880 AT1G75880 AT1G75890 AT1G75890 AT1G75890 AT1G75900 AT3G14820 AT3G43550 AT3G43570 AT5G42170
fragaria_vesca	FvH4_2g38112 FvH4_2g38120
malus_domestica	MD08G1009700.v1.1 MD08G1009800.v1.1 MD15G1008800.v1.1 MD15G1008900.v1.1 MD15G1009000.v1.1 MD15G1009100.v1.1 MD15G1009500.v1.1 MD15G1009600.v1.1
prunus_persica	Prupe.1G361800_v2.0.a1 Prupe.1G361800_v2.0.a1 Prupe.1G361900_v2.0.a1 Prupe.1G361900_v2.0.a1 Prupe.1G361900_v2.0.a1 Prupe.1G361900_v2.0.a1 Prupe.1G362000_v2.0.a1 Prupe.1G362100_v2.0.a1
pyrus_communis	pycom08g00820 pycom08g00830 pycom15g00730 pycom15g00740 pycom15g00750 pycom15g00760 pycom15g00770
rosa_chinensis	RchiOBHm_Chr6g0303381 RchiOBHm_Chr6g0303411
rosa_laevigata	RLG00000011087 RLG00000011088
rosa_multiflora	Rmu_sc0002586.1_g000041 Rmu_ssc0000114.1_g000055 Rmu_ssc0000114.1_g000059
rosa_roxburghii	Rroxscaffold_7G00164790 Rroxscaffold_7G00164830
rosa_rugosa	Rorug06G0321000
rosa_samantha	Rh6AG435300 Rh6AG435400 Rh6CG447300 Rh6CG447500 Rh6DG434100 Rh6DG434200
rosa_wichuraiana	Rw6G037690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	647
AatII	GACGTC	1 cut(s)	627
AccB1I	GGYRCC	1 cut(s)	407
AciI	CCGC	1 cut(s)	248
AcsI	RAATTY	2 cut(s)	64, 340
AcuI	CTGAAG	1 cut(s)	656
AcyI	GRCGYC	1 cut(s)	624
AfaI	GTAC	3 cut(s)	194, 738, 791
AfiI	CCNNNNNNNGG	2 cut(s)	332, 728
AflII	CTTAAG	1 cut(s)	299
AflIII	ACRYGT	1 cut(s)	471
AgeI	ACCGGT	1 cut(s)	362
AgsI	TTSAA	3 cut(s)	478, 814, 847
AhlI	ACTAGT	1 cut(s)	662
AjnI	CCWGG	3 cut(s)	229, 346, 552
AjuI	GAANNNNNNNTTGG	4 cut(s)	533, 565, 575, 607
AluBI	AGCT	6 cut(s)	6, 151, 496, 808, 823, 856
AluI	AGCT	6 cut(s)	6, 151, 496, 808, 823, 856
Alw21I	GWGCWC	1 cut(s)	721
Alw26I	GTCTC	1 cut(s)	551
Alw44I	GTGCAC	1 cut(s)	717
ApaLI	GTGCAC	1 cut(s)	717
ApeKI	GCWGC	3 cut(s)	148, 800, 856
ApoI	RAATTY	2 cut(s)	64, 340
AsiGI	ACCGGT	1 cut(s)	362
Asp700I	GAANNNNTTC	1 cut(s)	809
AspS9I	GGNCC	1 cut(s)	54
AsuHPI	GGTGA	4 cut(s)	229, 275, 347, 908
AsuII	TTCGAA	1 cut(s)	143
AvaII	GGWCC	1 cut(s)	54
BaeGI	GKGCMC	1 cut(s)	721
BanI	GGYRCC	1 cut(s)	407
BbsI	GAAGAC	1 cut(s)	132
Bbv12I	GWGCWC	1 cut(s)	721
BbvI	GCAGC	3 cut(s)	160, 812, 843
BcgI	CGANNNNNNTGC	4 cut(s)	432, 466, 560, 594
BciT130I	CCWGG	3 cut(s)	231, 348, 554
BcoDI	GTCTC	1 cut(s)	551
BcuI	ACTAGT	1 cut(s)	662
BfaI	CTAG	3 cut(s)	663, 696, 755
BfrI	CTTAAG	1 cut(s)	299
BisI	GCNGC	3 cut(s)	149, 801, 857
BlsI	GCNGC	3 cut(s)	150, 802, 858
Bme1390I	CCNGG	3 cut(s)	231, 348, 554
Bme18I	GGWCC	1 cut(s)	54
BmgT120I	GGNCC	1 cut(s)	54
BmiI	GGNNCC	2 cut(s)	127, 409
BmrFI	CCNGG	3 cut(s)	231, 348, 554
BmsI	GCATC	1 cut(s)	612
BpiI	GAAGAC	1 cut(s)	132
Bpu14I	TTCGAA	1 cut(s)	143
Bsa29I	ATCGAT	1 cut(s)	882
BsaHI	GRCGYC	1 cut(s)	624
BsaJI	CCNNGG	1 cut(s)	346
BsaWI	WCCGGW	2 cut(s)	362, 410
Bsc4I	CCNNNNNNNGG	2 cut(s)	332, 728
Bse118I	RCCGGY	4 cut(s)	244, 281, 362, 563
Bse3DI	GCAATG	2 cut(s)	382, 576
BseBI	CCWGG	3 cut(s)	231, 348, 554
BseCI	ATCGAT	1 cut(s)	882
BseDI	CCNNGG	1 cut(s)	346
BseGI	GGATG	1 cut(s)	531
BseLI	CCNNNNNNNGG	2 cut(s)	332, 728
BseMI	GCAATG	2 cut(s)	382, 576
BseMII	CTCAG	2 cut(s)	405, 437
BseSI	GKGCMC	1 cut(s)	721
BseXI	GCAGC	3 cut(s)	160, 812, 843
BsgI	GTGCAG	1 cut(s)	801
Bsh1285I	CGRYCG	1 cut(s)	363
BshNI	GGYRCC	1 cut(s)	407
BshTI	ACCGGT	1 cut(s)	362
BshVI	ATCGAT	1 cut(s)	882
BsiEI	CGRYCG	1 cut(s)	363
BsiHKAI	GWGCWC	1 cut(s)	721
BsiSI	CCGG	5 cut(s)	245, 282, 363, 411, 564
BslFI	GGGAC	2 cut(s)	371, 611
BslI	CCNNNNNNNGG	2 cut(s)	332, 728
BsmAI	GTCTC	1 cut(s)	551
BsmFI	GGGAC	2 cut(s)	371, 611
Bsp119I	TTCGAA	1 cut(s)	143
Bsp1286I	GDGCHC	1 cut(s)	721
Bsp143I	GATC	1 cut(s)	270
BspACI	CCGC	1 cut(s)	248
BspCNI	CTCAG	2 cut(s)	404, 436
BspDI	ATCGAT	1 cut(s)	882
BspLI	GGNNCC	2 cut(s)	127, 409
BspT104I	TTCGAA	1 cut(s)	143
BspT107I	GGYRCC	1 cut(s)	407
BspTI	CTTAAG	1 cut(s)	299
BsrDI	GCAATG	2 cut(s)	382, 576
BsrFI	RCCGGY	4 cut(s)	244, 281, 362, 563
BssAI	RCCGGY	4 cut(s)	244, 281, 362, 563
BssECI	CCNNGG	1 cut(s)	346
BssMI	GATC	1 cut(s)	270
BssNI	GRCGYC	1 cut(s)	624
Bst2UI	CCWGG	3 cut(s)	231, 348, 554
Bst4CI	ACNGT	4 cut(s)	545, 777, 866, 932
Bst6I	CTCTTC	3 cut(s)	109, 554, 780
BstACI	GRCGYC	1 cut(s)	624
BstAFI	CTTAAG	1 cut(s)	299
BstBI	TTCGAA	1 cut(s)	143
BstC8I	GCNNGC	2 cut(s)	246, 515
BstDEI	CTNAG	3 cut(s)	391, 423, 819
BstF5I	GGATG	1 cut(s)	531
BstKTI	GATC	1 cut(s)	273
BstMAI	GTCTC	1 cut(s)	551
BstMBI	GATC	1 cut(s)	270
BstMCI	CGRYCG	1 cut(s)	363
BstMWI	GCNNNNNNNGC	2 cut(s)	460, 692
BstNI	CCWGG	3 cut(s)	231, 348, 554
BstNSI	RCATGY	1 cut(s)	475
BstSCI	CCNGG	3 cut(s)	229, 346, 552
BstSLI	GKGCMC	1 cut(s)	721
BstV1I	GCAGC	3 cut(s)	160, 812, 843
BstV2I	GAAGAC	1 cut(s)	132
BstXI	CCANNNNNNTGG	1 cut(s)	76
Bsu15I	ATCGAT	1 cut(s)	882
BsuTUI	ATCGAT	1 cut(s)	882
BtgZI	GCGATG	1 cut(s)	585
BtsCI	GGATG	1 cut(s)	531
BtsIMutI	CAGTG	4 cut(s)	246, 636, 721, 782
Cac8I	GCNNGC	2 cut(s)	246, 515
Cfr10I	RCCGGY	4 cut(s)	244, 281, 362, 563
Cfr13I	GGNCC	1 cut(s)	54
ClaI	ATCGAT	1 cut(s)	882
CseI	GACGC	1 cut(s)	806
Csp6I	GTAC	3 cut(s)	193, 737, 790
CspAI	ACCGGT	1 cut(s)	362
CviAII	CATG	3 cut(s)	274, 472, 835
CviJI	RGCY	8 cut(s)	6, 151, 496, 503, 695, 808, 823, 856
CviKI_1	RGCY	8 cut(s)	6, 151, 496, 503, 695, 808, 823, 856
CviQI	GTAC	3 cut(s)	193, 737, 790
DdeI	CTNAG	3 cut(s)	391, 423, 819
DpnI	GATC	1 cut(s)	272
DpnII	GATC	1 cut(s)	270
DrdI	GACNNNNNNGTC	1 cut(s)	647
DseDI	GACNNNNNNGTC	1 cut(s)	647
Eam1104I	CTCTTC	3 cut(s)	109, 554, 780
EarI	CTCTTC	3 cut(s)	109, 554, 780
Eco47I	GGWCC	1 cut(s)	54
Eco57I	CTGAAG	1 cut(s)	656
EcoRII	CCWGG	3 cut(s)	229, 346, 552
FaeI	CATG	3 cut(s)	277, 475, 838
FalI	AAGNNNNNCTT	2 cut(s)	137, 169
FaqI	GGGAC	2 cut(s)	371, 611
FatI	CATG	3 cut(s)	273, 471, 834
FauNDI	CATATG	1 cut(s)	331
Fnu4HI	GCNGC	3 cut(s)	149, 801, 857
FokI	GGATG	1 cut(s)	518
Fsp4HI	GCNGC	3 cut(s)	149, 801, 857
FspBI	CTAG	3 cut(s)	663, 696, 755
GluI	GCNGC	3 cut(s)	149, 801, 857
HapII	CCGG	5 cut(s)	245, 282, 363, 411, 564
HgaI	GACGC	1 cut(s)	806
Hin1I	GRCGYC	1 cut(s)	624
Hin1II	CATG	3 cut(s)	277, 475, 838
HincII	GTYRAC	1 cut(s)	652
HindII	GTYRAC	1 cut(s)	652
HinfI	GANTC	3 cut(s)	81, 201, 266
HpaII	CCGG	5 cut(s)	245, 282, 363, 411, 564
HphI	GGTGA	4 cut(s)	229, 275, 347, 908
Hpy166II	GTNNAC	4 cut(s)	652, 719, 737, 889
Hpy188I	TCNGA	5 cut(s)	360, 394, 426, 460, 608
Hpy188III	TCNNGA	2 cut(s)	154, 674
Hpy8I	GTNNAC	4 cut(s)	652, 719, 737, 889
Hpy99I	CGWCG	1 cut(s)	800
HpyAV	CCTTC	4 cut(s)	109, 680, 693, 750
HpyCH4III	ACNGT	4 cut(s)	545, 777, 866, 932
HpyCH4IV	ACGT	1 cut(s)	624
HpyCH4V	TGCA	4 cut(s)	318, 686, 719, 782
HpyF10VI	GCNNNNNNNGC	2 cut(s)	460, 692
HpyF3I	CTNAG	3 cut(s)	391, 423, 819
HpySE526I	ACGT	1 cut(s)	624
Hsp92I	GRCGYC	1 cut(s)	624
Hsp92II	CATG	3 cut(s)	277, 475, 838
KroI	GCCGGC	1 cut(s)	244
KroNI	GCCGGC	1 cut(s)	246
Kzo9I	GATC	1 cut(s)	270
LmnI	GCTCC	1 cut(s)	460
Lsp1109I	GCAGC	3 cut(s)	160, 812, 843
LweI	GCATC	1 cut(s)	612
MaeI	CTAG	3 cut(s)	663, 696, 755
MaeII	ACGT	1 cut(s)	624
MaeIII	GTNAC	2 cut(s)	23, 263
MalI	GATC	1 cut(s)	272
MboI	GATC	1 cut(s)	270
MboII	GAAGA	9 cut(s)	96, 99, 102, 105, 108, 132, 541, 797, 905
MhlI	GDGCHC	1 cut(s)	721
MluCI	AATT	5 cut(s)	64, 319, 340, 434, 505
MlyI	GAGTC	1 cut(s)	260
MmeI	TCCRAC	2 cut(s)	383, 855
MroNI	GCCGGC	1 cut(s)	244
MroXI	GAANNNNTTC	1 cut(s)	809
MseI	TTAA	4 cut(s)	8, 300, 312, 467
MspCI	CTTAAG	1 cut(s)	299
MspI	CCGG	5 cut(s)	245, 282, 363, 411, 564
MspR9I	CCNGG	3 cut(s)	231, 348, 554
MvaI	CCWGG	3 cut(s)	231, 348, 554
MwoI	GCNNNNNNNGC	2 cut(s)	460, 692
NaeI	GCCGGC	1 cut(s)	246
NdeI	CATATG	1 cut(s)	331
NdeII	GATC	1 cut(s)	270
NgoMIV	GCCGGC	1 cut(s)	244
NlaIII	CATG	3 cut(s)	277, 475, 838
NlaIV	GGNNCC	2 cut(s)	127, 409
NmuCI	GTSAC	2 cut(s)	23, 263
NspI	RCATGY	1 cut(s)	475
NspV	TTCGAA	1 cut(s)	143
PciI	ACATGT	1 cut(s)	471
PcsI	WCGNNNNNNNCGW	1 cut(s)	567
PdiI	GCCGGC	1 cut(s)	246
PdmI	GAANNNNTTC	1 cut(s)	809
PfeI	GAWTC	2 cut(s)	81, 201
PinAI	ACCGGT	1 cut(s)	362
PkrI	GCNGC	3 cut(s)	150, 802, 858
PleI	GAGTC	1 cut(s)	260
PpsI	GAGTC	1 cut(s)	260
PscI	ACATGT	1 cut(s)	471
Psp6I	CCWGG	3 cut(s)	229, 346, 552
PspGI	CCWGG	3 cut(s)	229, 346, 552
PspN4I	GGNNCC	2 cut(s)	127, 409
PspPI	GGNCC	1 cut(s)	54
RsaI	GTAC	3 cut(s)	194, 738, 791
RsaNI	GTAC	3 cut(s)	193, 737, 790
SaqAI	TTAA	4 cut(s)	8, 300, 312, 467
SatI	GCNGC	3 cut(s)	149, 801, 857
Sau3AI	GATC	1 cut(s)	270
Sau96I	GGNCC	1 cut(s)	54
SchI	GAGTC	1 cut(s)	260
ScrFI	CCNGG	3 cut(s)	231, 348, 554
SduI	GDGCHC	1 cut(s)	721
SfaNI	GCATC	1 cut(s)	612
SfuI	TTCGAA	1 cut(s)	143
SinI	GGWCC	1 cut(s)	54
SmlI	CTYRAG	1 cut(s)	299
SmoI	CTYRAG	1 cut(s)	299
SpeI	ACTAGT	1 cut(s)	662
Sse9I	AATT	5 cut(s)	64, 319, 340, 434, 505
SsiI	CCGC	1 cut(s)	248
SspMI	CTAG	3 cut(s)	663, 696, 755
StyD4I	CCNGG	3 cut(s)	229, 346, 552
TaaI	ACNGT	4 cut(s)	545, 777, 866, 932
TaiI	ACGT	1 cut(s)	627
TaqI	TCGA	3 cut(s)	143, 269, 882
TasI	AATT	5 cut(s)	64, 319, 340, 434, 505
TatI	WGTACW	1 cut(s)	789
TfiI	GAWTC	2 cut(s)	81, 201
Tru1I	TTAA	4 cut(s)	8, 300, 312, 467
Tru9I	TTAA	4 cut(s)	8, 300, 312, 467
TscAI	CASTG	4 cut(s)	246, 643, 721, 782
TseFI	GTSAC	2 cut(s)	23, 263
TseI	GCWGC	3 cut(s)	148, 800, 856
Tsp45I	GTSAC	2 cut(s)	23, 263
TspDTI	ATGAA	3 cut(s)	388, 520, 851
TspRI	CASTG	4 cut(s)	246, 643, 721, 782
Vha464I	CTTAAG	1 cut(s)	299
VneI	GTGCAC	1 cut(s)	717
VpaK11BI	GGWCC	1 cut(s)	54
XapI	RAATTY	2 cut(s)	64, 340
XceI	RCATGY	1 cut(s)	475
XmnI	GAANNNNTTC	1 cut(s)	809
XspI	CTAG	3 cut(s)	663, 696, 755
ZraI	GACGTC	1 cut(s)	625

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.