Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0001158

Physical Location & Seq

Genomic Coordinates Reverse (-)

6694003 .. 6696651

Gene Structure 2649 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00164790.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1098 bp

ATGGATGCAGCACGAGCAATAGTACCGTGTATTCTTTGTTATATTCTGATGTGCAATGATAGCGTCGGAGAGGGTTTAACCCTGAAGCAGATGAAGCTTAAAATACCAGCGAACGTAAGTGTTCCGGCAGTGATTGCGTTTGGAGATTCAATAGTTGATACAGGCAACAATAACAACAACTTCATAACATTTGCTCGCTGCAATTTCCTCCCTTATGGCATAGACTTCCAAGGTGGACTTCCAACCGGACGATTCTCAAATGGAAAGGTTCCTGCTGACCTTCTAGTGGAAGCATTGGGAATTAAGGAGCTGTTGCCACCCTATATGGATCCATCCCTAGACCCTAATGATCTCCTTACTGGTATTAACTTGGCTGCTGGAGGTGTAGGTTATGACCCTTTGACATCAGAAGTCGCGGCAGTTGAATCACTGTCCGATCAGCTGGAACAATTCAAAGGGTACATAGAAAAGCTGAAAGGAATCGTCGGAGAAAAGAGAACAAACTTCATCATATCAAATAGTTTGATTATAGTGGTAGCAGGAAGCAACGACATTTCGAATACCTATTTTGTTAGTGGTATCAGGAAATTGCATTTCGATGTTCCTTCTTACACCGACTTCTTGCTCAATCATGCTTCGCAATTCTTCAAGGAATTATATGGATTGGGTGCACGAAGAATAGGCGTTTTTGGTGTACCAGCTATTGGGTGTGTGCCATCCCAAAGAACAATTGGAGGAGGCATCGGAAGACGTTGTGCCGAGAATCAAAACCAAGCAGCGGAGCTCTTCAACTCCAAACTATCTGCAGAGACGAATCACCTTAGACACACACTCCCCAACTCAAAGTTCGTTTACATAGACGTCTACAACCCATTACTTGATATCATCACAAACTCTAATAAATACGGGTTTGAAGTTGTAGACAAAGGGTGTTGTGGTACTGGTTTGGTGGAAGTAACAAAACTGTGCAACCAGTTTCAGCGAACCTGTACGGACACCTCCAAATATGTCTTTTGGGATAGTTACCATCCAACTGAAAGAGCATACAGGATCCTTCTGCAGCAAGTCCTAACGCAATCTGCAAGCGGTTTCTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lipase_GDSL

Protein Analysis

365

Amino Acids

39.91

Weight (kDa)

5.99

Isoelectric Point (pI)

20.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lipase_GDSL	PF00657	44 - 354	1.7e-33	GDSL-like Lipase/Acylhydrolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001158)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G58520 AT1G58525 AT1G58725 AT1G59030 AT1G59406 AT1G75880 AT1G75880 AT1G75890 AT1G75890 AT1G75890 AT1G75900 AT3G14820 AT3G43550 AT3G43570 AT5G42170
fragaria_vesca	FvH4_2g38112 FvH4_2g38120
malus_domestica	MD08G1009700.v1.1 MD08G1009800.v1.1 MD15G1008800.v1.1 MD15G1008900.v1.1 MD15G1009000.v1.1 MD15G1009100.v1.1 MD15G1009500.v1.1 MD15G1009600.v1.1
prunus_persica	Prupe.1G361800_v2.0.a1 Prupe.1G361800_v2.0.a1 Prupe.1G361900_v2.0.a1 Prupe.1G361900_v2.0.a1 Prupe.1G361900_v2.0.a1 Prupe.1G361900_v2.0.a1 Prupe.1G362000_v2.0.a1 Prupe.1G362100_v2.0.a1
pyrus_communis	pycom08g00820 pycom08g00830 pycom15g00730 pycom15g00740 pycom15g00750 pycom15g00760 pycom15g00770
rosa_chinensis	RchiOBHm_Chr6g0303381 RchiOBHm_Chr6g0303411
rosa_laevigata	RLG00000011087 RLG00000011088
rosa_multiflora	Rmu_sc0002586.1_g000041 Rmu_ssc0000114.1_g000055 Rmu_ssc0000114.1_g000059
rosa_roxburghii	Rroxscaffold_7G00164790 Rroxscaffold_7G00164830
rosa_rugosa	Rorug06G0321000
rosa_samantha	Rh6AG435300 Rh6AG435400 Rh6CG447300 Rh6CG447500 Rh6DG434100 Rh6DG434200
rosa_wichuraiana	Rw6G037690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	864
AccB7I	CCANNNNNTGG	1 cut(s)	704
AccI	GTMKAC	2 cut(s)	864, 921
AccII	CGCG	1 cut(s)	416
AciI	CCGC	3 cut(s)	416, 779, 1086
AclWI	GGATC	4 cut(s)	323, 336, 1045, 1058
AcuI	CTGAAG	1 cut(s)	104
AcyI	GRCGYC	1 cut(s)	861
AfaI	GTAC	5 cut(s)	24, 461, 696, 940, 991
AfiI	CCNNNNNNNGG	3 cut(s)	286, 704, 778
AgsI	TTSAA	6 cut(s)	150, 425, 454, 649, 790, 914
AjuI	GAANNNNNNNTTGG	4 cut(s)	222, 254, 830, 862
AluBI	AGCT	6 cut(s)	97, 310, 442, 472, 701, 784
AluI	AGCT	6 cut(s)	97, 310, 442, 472, 701, 784
Alw21I	GWGCWC	2 cut(s)	673, 786
Alw26I	GTCTC	1 cut(s)	803
Alw44I	GTGCAC	1 cut(s)	669
AlwI	GGATC	4 cut(s)	323, 336, 1045, 1058
ApaLI	GTGCAC	1 cut(s)	669
ApeKI	GCWGC	5 cut(s)	8, 198, 374, 776, 1060
AsuHPI	GGTGA	1 cut(s)	809
AsuII	TTCGAA	1 cut(s)	557
BaeGI	GKGCMC	1 cut(s)	673
BamHI	GGATCC	2 cut(s)	328, 1050
BanII	GRGCYC	1 cut(s)	786
BauI	CACGAG	1 cut(s)	12
BbsI	GAAGAC	1 cut(s)	754
Bbv12I	GWGCWC	2 cut(s)	673, 786
BbvI	GCAGC	5 cut(s)	20, 185, 361, 788, 1072
BccI	CCATC	3 cut(s)	340, 724, 1035
BcoDI	GTCTC	1 cut(s)	803
BfaI	CTAG	2 cut(s)	284, 338
BfmI	CTRYAG	2 cut(s)	804, 1058
BisI	GCNGC	6 cut(s)	9, 199, 375, 417, 777, 1061
BlsI	GCNGC	6 cut(s)	10, 200, 376, 418, 778, 1062
BmiI	GGNNCC	3 cut(s)	270, 330, 1052
BmsI	GCATC	1 cut(s)	750
BpiI	GAAGAC	1 cut(s)	754
BpmI	CTGGAG	1 cut(s)	399
Bpu14I	TTCGAA	1 cut(s)	557
BsaHI	GRCGYC	1 cut(s)	861
BsaJI	CCNNGG	1 cut(s)	229
BsaWI	WCCGGW	1 cut(s)	245
BsaXI	ACNNNNNCTCC	2 cut(s)	816, 846
Bsc4I	CCNNNNNNNGG	3 cut(s)	286, 704, 778
Bse1I	ACTGG	3 cut(s)	364, 946, 973
Bse3DI	GCAATG	1 cut(s)	61
BseDI	CCNNGG	1 cut(s)	229
BseGI	GGATG	4 cut(s)	10, 332, 716, 1027
BseLI	CCNNNNNNNGG	3 cut(s)	286, 704, 778
BseMI	GCAATG	1 cut(s)	61
BseNI	ACTGG	3 cut(s)	364, 946, 973
BseRI	GAGGAG	1 cut(s)	750
BseSI	GKGCMC	1 cut(s)	673
BseXI	GCAGC	5 cut(s)	20, 185, 361, 788, 1072
Bsh1236I	CGCG	1 cut(s)	416
BsiHKAI	GWGCWC	2 cut(s)	673, 786
BsiSI	CCGG	2 cut(s)	125, 246
BslI	CCNNNNNNNGG	3 cut(s)	286, 704, 778
BsmAI	GTCTC	1 cut(s)	803
BsmBI	CGTCTC	1 cut(s)	803
Bsp119I	TTCGAA	1 cut(s)	557
Bsp1286I	GDGCHC	2 cut(s)	673, 786
Bsp143I	GATC	4 cut(s)	328, 349, 436, 1050
BspACI	CCGC	3 cut(s)	416, 779, 1086
BspFNI	CGCG	1 cut(s)	416
BspLI	GGNNCC	3 cut(s)	270, 330, 1052
BspMAI	CTGCAG	2 cut(s)	808, 1062
BspPI	GGATC	4 cut(s)	323, 336, 1045, 1058
BspQI	GCTCTTC	1 cut(s)	791
BspT104I	TTCGAA	1 cut(s)	557
BsrDI	GCAATG	1 cut(s)	61
BsrI	ACTGG	3 cut(s)	364, 946, 973
BssECI	CCNNGG	1 cut(s)	229
BssMI	GATC	4 cut(s)	328, 349, 436, 1050
BssNI	GRCGYC	1 cut(s)	861
BssSI	CACGAG	1 cut(s)	12
BssT1I	CCWWGG	1 cut(s)	229
Bst2BI	CACGAG	1 cut(s)	12
Bst4CI	ACNGT	3 cut(s)	27, 432, 966
Bst6I	CTCTTC	1 cut(s)	791
BstACI	GRCGYC	1 cut(s)	861
BstAPI	GCANNNNNTGC	1 cut(s)	134
BstBI	TTCGAA	1 cut(s)	557
BstC8I	GCNNGC	2 cut(s)	196, 1084
BstDEI	CTNAG	1 cut(s)	821
BstF5I	GGATG	4 cut(s)	10, 332, 716, 1027
BstFNI	CGCG	1 cut(s)	416
BstKTI	GATC	4 cut(s)	331, 352, 439, 1053
BstMAI	GTCTC	1 cut(s)	803
BstMBI	GATC	4 cut(s)	328, 349, 436, 1050
BstMWI	GCNNNNNNNGC	4 cut(s)	14, 60, 94, 134
BstSFI	CTRYAG	2 cut(s)	804, 1058
BstSLI	GKGCMC	1 cut(s)	673
BstUI	CGCG	1 cut(s)	416
BstV1I	GCAGC	5 cut(s)	20, 185, 361, 788, 1072
BstV2I	GAAGAC	1 cut(s)	754
BstX2I	RGATCY	2 cut(s)	328, 1050
BstYI	RGATCY	2 cut(s)	328, 1050
BtsCI	GGATG	4 cut(s)	10, 332, 716, 1027
BtsI	GCAGTG	1 cut(s)	135
BtsIMutI	CAGTG	2 cut(s)	135, 428
Cac8I	GCNNGC	2 cut(s)	196, 1084
CseI	GACGC	1 cut(s)	52
Csp6I	GTAC	5 cut(s)	23, 460, 695, 939, 990
CviAII	CATG	1 cut(s)	632
CviJI	RGCY	7 cut(s)	97, 310, 374, 442, 472, 701, 784
CviKI_1	RGCY	7 cut(s)	97, 310, 374, 442, 472, 701, 784
CviQI	GTAC	5 cut(s)	23, 460, 695, 939, 990
DdeI	CTNAG	1 cut(s)	821
DpnI	GATC	4 cut(s)	330, 351, 438, 1052
DpnII	GATC	4 cut(s)	328, 349, 436, 1050
Eam1104I	CTCTTC	1 cut(s)	791
EarI	CTCTTC	1 cut(s)	791
Ecl136II	GAGCTC	1 cut(s)	784
Eco130I	CCWWGG	1 cut(s)	229
Eco24I	GRGCYC	1 cut(s)	786
Eco32I	GATATC	1 cut(s)	883
Eco53kI	GAGCTC	1 cut(s)	784
Eco57I	CTGAAG	1 cut(s)	104
EcoICRI	GAGCTC	1 cut(s)	784
EcoRV	GATATC	1 cut(s)	883
EcoT14I	CCWWGG	1 cut(s)	229
EcoT38I	GRGCYC	1 cut(s)	786
ErhI	CCWWGG	1 cut(s)	229
Esp3I	CGTCTC	1 cut(s)	803
FaeI	CATG	1 cut(s)	635
FalI	AAGNNNNNCTT	2 cut(s)	222, 254
FatI	CATG	1 cut(s)	631
FblI	GTMKAC	2 cut(s)	864, 921
Fnu4HI	GCNGC	6 cut(s)	9, 199, 375, 417, 777, 1061
FokI	GGATG	4 cut(s)	17, 319, 703, 1014
FriOI	GRGCYC	1 cut(s)	786
Fsp4HI	GCNGC	6 cut(s)	9, 199, 375, 417, 777, 1061
FspBI	CTAG	2 cut(s)	284, 338
GluI	GCNGC	6 cut(s)	9, 199, 375, 417, 777, 1061
GsuI	CTGGAG	1 cut(s)	399
HapII	CCGG	2 cut(s)	125, 246
HgaI	GACGC	1 cut(s)	52
Hin1I	GRCGYC	1 cut(s)	861
Hin1II	CATG	1 cut(s)	635
HindIII	AAGCTT	1 cut(s)	95
HinfI	GANTC	6 cut(s)	146, 252, 425, 480, 763, 814
HpaII	CCGG	2 cut(s)	125, 246
HphI	GGTGA	1 cut(s)	809
Hpy166II	GTNNAC	6 cut(s)	236, 671, 695, 853, 865, 922
Hpy188I	TCNGA	6 cut(s)	48, 68, 409, 436, 488, 746
Hpy188III	TCNNGA	1 cut(s)	583
Hpy8I	GTNNAC	6 cut(s)	236, 671, 695, 853, 865, 922
Hpy99I	CGWCG	2 cut(s)	68, 488
HpyAV	CCTTC	3 cut(s)	290, 615, 1064
HpyCH4III	ACNGT	3 cut(s)	27, 432, 966
HpyCH4IV	ACGT	3 cut(s)	114, 751, 861
HpyCH4V	TGCA	9 cut(s)	8, 54, 201, 592, 671, 806, 969, 1060, 1082
HpyF10VI	GCNNNNNNNGC	4 cut(s)	14, 60, 94, 134
HpyF3I	CTNAG	1 cut(s)	821
HpySE526I	ACGT	3 cut(s)	114, 751, 861
Hsp92I	GRCGYC	1 cut(s)	861
Hsp92II	CATG	1 cut(s)	635
Kzo9I	GATC	4 cut(s)	328, 349, 436, 1050
LguI	GCTCTTC	1 cut(s)	791
LmnI	GCTCC	2 cut(s)	307, 781
Lsp1109I	GCAGC	5 cut(s)	20, 185, 361, 788, 1072
LweI	GCATC	1 cut(s)	750
MaeI	CTAG	2 cut(s)	284, 338
MaeII	ACGT	3 cut(s)	114, 751, 861
MaeIII	GTNAC	2 cut(s)	955, 1022
MalI	GATC	4 cut(s)	330, 351, 438, 1052
MboI	GATC	4 cut(s)	328, 349, 436, 1050
MboII	GAAGA	4 cut(s)	637, 687, 759, 778
MfeI	CAATTG	1 cut(s)	729
MflI	RGATCY	2 cut(s)	328, 1050
MhlI	GDGCHC	2 cut(s)	673, 786
MluCI	AATT	7 cut(s)	202, 300, 449, 587, 641, 653, 729
MmeI	TCCRAC	4 cut(s)	46, 266, 466, 1055
MnlI	CCTC	6 cut(s)	64, 218, 374, 728, 731, 1009
MseI	TTAA	4 cut(s)	77, 99, 303, 366
MslI	CAYNNNNRTG	1 cut(s)	597
MspA1I	CMGCKG	2 cut(s)	442, 779
MspI	CCGG	2 cut(s)	125, 246
MunI	CAATTG	1 cut(s)	729
MvnI	CGCG	1 cut(s)	416
MwoI	GCNNNNNNNGC	4 cut(s)	14, 60, 94, 134
NdeII	GATC	4 cut(s)	328, 349, 436, 1050
NlaIII	CATG	1 cut(s)	635
NlaIV	GGNNCC	3 cut(s)	270, 330, 1052
NmeAIII	GCCGAG	1 cut(s)	784
NspV	TTCGAA	1 cut(s)	557
PciSI	GCTCTTC	1 cut(s)	791
PfeI	GAWTC	6 cut(s)	146, 252, 425, 480, 763, 814
PflMI	CCANNNNNTGG	1 cut(s)	704
PkrI	GCNGC	6 cut(s)	10, 200, 376, 418, 778, 1062
Psp124BI	GAGCTC	1 cut(s)	786
PspN4I	GGNNCC	3 cut(s)	270, 330, 1052
PstI	CTGCAG	2 cut(s)	808, 1062
PsuI	RGATCY	2 cut(s)	328, 1050
PvuII	CAGCTG	1 cut(s)	442
RsaI	GTAC	5 cut(s)	24, 461, 696, 940, 991
RsaNI	GTAC	5 cut(s)	23, 460, 695, 939, 990
RseI	CAYNNNNRTG	1 cut(s)	597
SacI	GAGCTC	1 cut(s)	786
SapI	GCTCTTC	1 cut(s)	791
SaqAI	TTAA	4 cut(s)	77, 99, 303, 366
SatI	GCNGC	6 cut(s)	9, 199, 375, 417, 777, 1061
Sau3AI	GATC	4 cut(s)	328, 349, 436, 1050
SduI	GDGCHC	2 cut(s)	673, 786
SfaNI	GCATC	1 cut(s)	750
SfcI	CTRYAG	2 cut(s)	804, 1058
SfuI	TTCGAA	1 cut(s)	557
SmiMI	CAYNNNNRTG	1 cut(s)	597
Sse9I	AATT	7 cut(s)	202, 300, 449, 587, 641, 653, 729
SsiI	CCGC	3 cut(s)	416, 779, 1086
SspMI	CTAG	2 cut(s)	284, 338
SstI	GAGCTC	1 cut(s)	786
StyI	CCWWGG	1 cut(s)	229
TaaI	ACNGT	3 cut(s)	27, 432, 966
TaiI	ACGT	3 cut(s)	117, 754, 864
TaqI	TCGA	2 cut(s)	557, 597
TasI	AATT	7 cut(s)	202, 300, 449, 587, 641, 653, 729
TauI	GCSGC	1 cut(s)	419
TfiI	GAWTC	6 cut(s)	146, 252, 425, 480, 763, 814
Tru1I	TTAA	4 cut(s)	77, 99, 303, 366
Tru9I	TTAA	4 cut(s)	77, 99, 303, 366
TscAI	CASTG	2 cut(s)	135, 435
TseI	GCWGC	5 cut(s)	8, 198, 374, 776, 1060
TspDTI	ATGAA	3 cut(s)	107, 172, 496
TspGWI	ACGGA	1 cut(s)	1007
TspRI	CASTG	2 cut(s)	135, 435
Van91I	CCANNNNNTGG	1 cut(s)	704
VneI	GTGCAC	1 cut(s)	669
XcmI	CCANNNNNNNNNTGG	1 cut(s)	728
XmiI	GTMKAC	2 cut(s)	864, 921
XspI	CTAG	2 cut(s)	284, 338
ZraI	GACGTC	1 cut(s)	862

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.