AT5G42170

Belongs to the 'GDSL' lipolytic enzyme family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0001158
Physical Location & Seq
Forward (+)
16848624 .. 16852221
3598 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G42170.1

Sequence Viewer

Length: 1110 bp
ATGTCACGTTTGGTGTATGTAATATTTTTGCTTGTAGTGGTAGAAGGTAGCAGGAACACTTTAGAACGAAATACTGAAACCAACGCAACAGAAGCCAAAGTAGAAGGTAAAGGTACAATAAAACTACCGCCGAATGTTACCATTCCTGGTATCATAACATTTGGAGATTCAATAGTTGACAGTGGAAACAATAACCACCTTCGTACAGCATTAAAATGTAACTTTCCTCCTTACGGTAAAGATTTTCCTGGCAAAATTGCTACTGGAAGATTTTCTGATGGAAGGGTTCCATCTGATATTGTCGCTGAAAGACTAGGAATAGCAGAAACAATACCAGCATATTTAAATCCAAAGCTCAAAAATGAAGATCTTCTCAAGGGTGTGAATTTTGCTTCAGGTGGTTCTGGTTACGATCCGTTAACAGCAAAACTAGTGAAAGTGGTATCGTTATCAGATCAACTAAAAAATTTCCAAGAATATAAAAATAAATTAAAGGTGATTGTTGGCGAAGAGAAAGCTAATTTCTTGGTGAAAAATAGTCTTTATCTTGTGGTAGCCAGCAGTAATGATATTGCTCATACCTATACGGCACGCTCCATCAAATATAACAAAACTTCATATGCTGATTATTTGGCTGATTCTGCTTCTAAATTTGTCAGTGCATTGTATGGACTTGGAGCTCGAAGAATCGGAGTATTTAGTGCAGTACCGGTTGGATGTGTACCAGCAGCTAGAACACTTCGTGGAAAATTGAAGCGAAGATGCTCAGAAAAACTTAACGAAGTGGCTCGCAACTTTAACGCGAAGATATCTCCAACATTGGAAGCTTTAGGAAAAGAGTTGCCAGATAGCAGAGTTGTGTTAATTGACGTGTGTGACACTCTTAATGACATGATAGAAAACCCTAAAAACTACGGATTTGAAGTATCAAACAGAGGATGCTGTGGAACCGGATTAGTCGAAGTACTATTTTTATGCAACAAAATCAATCCTTTTACATGCAAAAATTCATCTTCGTATATTTTTTGGGATAGTTACCATCCAACAGAAAAAGCTTACCAAATAATAGTTGATAAGTTGTTAGGAAATTACATTACGAAACTAGTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lipase_GDSL

Protein Analysis

369

Amino Acids

40.53

Weight (kDa)

9.18

Isoelectric Point (pI)

23.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lipase_GDSL PF00657 51 - 359 6.7e-34 GDSL-like Lipase/Acylhydrolase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 803
AciI CCGC 1 cut(s) 128
AclWI GGATC 1 cut(s) 407
AcsI RAATTY 4 cut(s) 385, 466, 650, 1006
AcuI CTGAAG 1 cut(s) 378
AdeI CACNNNGTG 1 cut(s) 743
AfaI GTAC 5 cut(s) 115, 205, 708, 723, 966
AfiI CCNNNNNNNGG 1 cut(s) 233
AflIII ACRYGT 1 cut(s) 870
AgeI ACCGGT 1 cut(s) 709
AgsI TTSAA 3 cut(s) 171, 754, 923
AhlI ACTAGT 2 cut(s) 430, 1102
AjiI CACGTC 1 cut(s) 871
AjnI CCWGG 2 cut(s) 145, 247
AluBI AGCT 6 cut(s) 355, 518, 680, 731, 827, 1055
AluI AGCT 6 cut(s) 355, 518, 680, 731, 827, 1055
Alw21I GWGCWC 1 cut(s) 682
AlwI GGATC 1 cut(s) 407
ApeKI GCWGC 1 cut(s) 728
ApoI RAATTY 4 cut(s) 385, 466, 650, 1006
AsiGI ACCGGT 1 cut(s) 709
Asp700I GAANNNNTTC 2 cut(s) 271, 369
AsuHPI GGTGA 2 cut(s) 508, 541
BanII GRGCYC 1 cut(s) 682
Bbv12I GWGCWC 1 cut(s) 682
BbvI GCAGC 1 cut(s) 740
BccI CCATC 4 cut(s) 272, 298, 605, 1047
BceAI ACGGC 1 cut(s) 603
BciT130I CCWGG 2 cut(s) 147, 249
BcuI ACTAGT 2 cut(s) 430, 1102
BfaI CTAG 4 cut(s) 314, 431, 732, 1103
BglII AGATCT 1 cut(s) 367
BisI GCNGC 1 cut(s) 729
BlsI GCNGC 1 cut(s) 730
BmcAI AGTACT 1 cut(s) 966
Bme1390I CCNGG 2 cut(s) 147, 249
BmgBI CACGTC 1 cut(s) 871
BmiI GGNNCC 2 cut(s) 288, 949
BmrFI CCNGG 2 cut(s) 147, 249
BmsI GCATC 2 cut(s) 752, 929
BpuEI CTTGAG 1 cut(s) 359
BsaWI WCCGGW 2 cut(s) 709, 950
Bsc4I CCNNNNNNNGG 1 cut(s) 233
Bse118I RCCGGY 1 cut(s) 709
Bse1I ACTGG 1 cut(s) 268
BseBI CCWGG 2 cut(s) 147, 249
BseGI GGATG 3 cut(s) 722, 944, 1039
BseLI CCNNNNNNNGG 1 cut(s) 233
BseMII CTCAG 1 cut(s) 780
BseNI ACTGG 1 cut(s) 268
BseXI GCAGC 1 cut(s) 740
BsgI GTGCAG 1 cut(s) 723
Bsh1236I CGCG 1 cut(s) 803
BshTI ACCGGT 1 cut(s) 709
BsiHKAI GWGCWC 1 cut(s) 682
BsiSI CCGG 2 cut(s) 710, 951
BslI CCNNNNNNNGG 1 cut(s) 233
Bsp1286I GDGCHC 1 cut(s) 682
Bsp143I GATC 3 cut(s) 367, 412, 454
BspACI CCGC 1 cut(s) 128
BspCNI CTCAG 1 cut(s) 779
BspFNI CGCG 1 cut(s) 803
BspLI GGNNCC 2 cut(s) 288, 949
BspPI GGATC 1 cut(s) 407
BsrFI RCCGGY 1 cut(s) 709
BsrI ACTGG 1 cut(s) 268
BssAI RCCGGY 1 cut(s) 709
BssMI GATC 3 cut(s) 367, 412, 454
Bst2UI CCWGG 2 cut(s) 147, 249
Bst4CI ACNGT 2 cut(s) 182, 236
Bst6I CTCTTC 1 cut(s) 504
BstC8I GCNNGC 3 cut(s) 559, 592, 790
BstDEI CTNAG 1 cut(s) 766
BstF5I GGATG 3 cut(s) 722, 944, 1039
BstFNI CGCG 1 cut(s) 803
BstKTI GATC 3 cut(s) 370, 415, 457
BstMBI GATC 3 cut(s) 367, 412, 454
BstMWI GCNNNNNNNGC 2 cut(s) 92, 641
BstNI CCWGG 2 cut(s) 147, 249
BstNSI RCATGY 1 cut(s) 1002
BstSCI CCNGG 2 cut(s) 145, 247
BstUI CGCG 1 cut(s) 803
BstV1I GCAGC 1 cut(s) 740
BstX2I RGATCY 1 cut(s) 367
BstYI RGATCY 1 cut(s) 367
BtrI CACGTC 1 cut(s) 871
BtsCI GGATG 3 cut(s) 722, 944, 1039
BtsIMutI CAGTG 2 cut(s) 187, 664
Cac8I GCNNGC 3 cut(s) 559, 592, 790
Cfr10I RCCGGY 1 cut(s) 709
Csp6I GTAC 5 cut(s) 114, 204, 707, 722, 965
CspAI ACCGGT 1 cut(s) 709
CviAII CATG 2 cut(s) 892, 999
CviQI GTAC 5 cut(s) 114, 204, 707, 722, 965
DdeI CTNAG 1 cut(s) 766
DpnI GATC 3 cut(s) 369, 414, 456
DpnII GATC 3 cut(s) 367, 412, 454
DraI TTTAAA 1 cut(s) 345
DraIII CACNNNGTG 1 cut(s) 743
Eam1104I CTCTTC 1 cut(s) 504
EarI CTCTTC 1 cut(s) 504
Ecl136II GAGCTC 1 cut(s) 680
Eco24I GRGCYC 1 cut(s) 682
Eco32I GATATC 1 cut(s) 810
Eco53kI GAGCTC 1 cut(s) 680
Eco57I CTGAAG 1 cut(s) 378
EcoICRI GAGCTC 1 cut(s) 680
EcoRII CCWGG 2 cut(s) 145, 247
EcoRV GATATC 1 cut(s) 810
EcoT38I GRGCYC 1 cut(s) 682
FaeI CATG 2 cut(s) 895, 1002
FatI CATG 2 cut(s) 891, 998
FauNDI CATATG 1 cut(s) 619
Fnu4HI GCNGC 1 cut(s) 729
FokI GGATG 3 cut(s) 729, 951, 1026
FriOI GRGCYC 1 cut(s) 682
Fsp4HI GCNGC 1 cut(s) 729
FspBI CTAG 4 cut(s) 314, 431, 732, 1103
GluI GCNGC 1 cut(s) 729
HapII CCGG 2 cut(s) 710, 951
Hin1II CATG 2 cut(s) 895, 1002
HincII GTYRAC 2 cut(s) 178, 420
HindII GTYRAC 2 cut(s) 178, 420
HindIII AAGCTT 2 cut(s) 825, 1053
HinfI GANTC 3 cut(s) 167, 638, 687
HpaI GTTAAC 1 cut(s) 420
HpaII CCGG 2 cut(s) 710, 951
HphI GGTGA 2 cut(s) 508, 541
Hpy166II GTNNAC 3 cut(s) 178, 420, 722
Hpy188I TCNGA 5 cut(s) 277, 295, 454, 692, 769
Hpy8I GTNNAC 3 cut(s) 178, 420, 722
HpyAV CCTTC 4 cut(s) 38, 98, 209, 276
HpyCH4III ACNGT 2 cut(s) 182, 236
HpyCH4IV ACGT 2 cut(s) 7, 870
HpyCH4V TGCA 4 cut(s) 662, 704, 978, 1002
HpyF10VI GCNNNNNNNGC 2 cut(s) 92, 641
HpyF3I CTNAG 1 cut(s) 766
HpySE526I ACGT 2 cut(s) 7, 870
Hsp92II CATG 2 cut(s) 895, 1002
KspAI GTTAAC 1 cut(s) 420
Kzo9I GATC 3 cut(s) 367, 412, 454
LmnI GCTCC 2 cut(s) 599, 677
Lsp1109I GCAGC 1 cut(s) 740
LweI GCATC 2 cut(s) 752, 929
MaeI CTAG 4 cut(s) 314, 431, 732, 1103
MaeII ACGT 2 cut(s) 7, 870
MaeIII GTNAC 6 cut(s) 3, 136, 218, 407, 875, 1034
MalI GATC 3 cut(s) 369, 414, 456
MboI GATC 3 cut(s) 367, 412, 454
MboII GAAGA 8 cut(s) 279, 362, 377, 521, 696, 771, 817, 1005
MflI RGATCY 1 cut(s) 367
MhlI GDGCHC 1 cut(s) 682
MmeI TCCRAC 3 cut(s) 694, 839, 1067
MnlI CCTC 2 cut(s) 237, 929
MroXI GAANNNNTTC 2 cut(s) 271, 369
MseI TTAA 8 cut(s) 212, 344, 419, 491, 777, 798, 863, 885
MslI CAYNNNNRTG 1 cut(s) 214
MspI CCGG 2 cut(s) 710, 951
MspR9I CCNGG 2 cut(s) 147, 249
MvaI CCWGG 2 cut(s) 147, 249
MvnI CGCG 1 cut(s) 803
MwoI GCNNNNNNNGC 2 cut(s) 92, 641
NdeI CATATG 1 cut(s) 619
NdeII GATC 3 cut(s) 367, 412, 454
NlaIII CATG 2 cut(s) 895, 1002
NlaIV GGNNCC 2 cut(s) 288, 949
NmuCI GTSAC 2 cut(s) 3, 875
NspI RCATGY 1 cut(s) 1002
PdmI GAANNNNTTC 2 cut(s) 271, 369
PfeI GAWTC 3 cut(s) 167, 638, 687
PinAI ACCGGT 1 cut(s) 709
PkrI GCNGC 1 cut(s) 730
Psp124BI GAGCTC 1 cut(s) 682
Psp6I CCWGG 2 cut(s) 145, 247
PspGI CCWGG 2 cut(s) 145, 247
PspN4I GGNNCC 2 cut(s) 288, 949
PsuI RGATCY 1 cut(s) 367
RsaI GTAC 5 cut(s) 115, 205, 708, 723, 966
RsaNI GTAC 5 cut(s) 114, 204, 707, 722, 965
RseI CAYNNNNRTG 1 cut(s) 214
SacI GAGCTC 1 cut(s) 682
SaqAI TTAA 8 cut(s) 212, 344, 419, 491, 777, 798, 863, 885
SatI GCNGC 1 cut(s) 729
Sau3AI GATC 3 cut(s) 367, 412, 454
ScaI AGTACT 1 cut(s) 966
ScrFI CCNGG 2 cut(s) 147, 249
SduI GDGCHC 1 cut(s) 682
SfaNI GCATC 2 cut(s) 752, 929
SmiI ATTTAAAT 1 cut(s) 345
SmiMI CAYNNNNRTG 1 cut(s) 214
SmlI CTYRAG 1 cut(s) 374
SmoI CTYRAG 1 cut(s) 374
SpeI ACTAGT 2 cut(s) 430, 1102
SsiI CCGC 1 cut(s) 128
SspI AATATT 1 cut(s) 24
SspMI CTAG 4 cut(s) 314, 431, 732, 1103
SstI GAGCTC 1 cut(s) 682
StyD4I CCNGG 2 cut(s) 145, 247
SwaI ATTTAAAT 1 cut(s) 345
TaaI ACNGT 2 cut(s) 182, 236
TaiI ACGT 2 cut(s) 10, 873
TaqI TCGA 2 cut(s) 682, 960
TatI WGTACW 1 cut(s) 964
TfiI GAWTC 3 cut(s) 167, 638, 687
Tru1I TTAA 8 cut(s) 212, 344, 419, 491, 777, 798, 863, 885
Tru9I TTAA 8 cut(s) 212, 344, 419, 491, 777, 798, 863, 885
TscAI CASTG 2 cut(s) 187, 664
TseFI GTSAC 2 cut(s) 3, 875
TseI GCWGC 1 cut(s) 728
Tsp45I GTSAC 2 cut(s) 3, 875
TspDTI ATGAA 3 cut(s) 378, 606, 999
TspGWI ACGGA 2 cut(s) 405, 930
TspRI CASTG 2 cut(s) 187, 664
XapI RAATTY 4 cut(s) 385, 466, 650, 1006
XceI RCATGY 1 cut(s) 1002
XmnI GAANNNNTTC 2 cut(s) 271, 369
XspI CTAG 4 cut(s) 314, 431, 732, 1103
ZrmI AGTACT 1 cut(s) 966
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.