Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0001158

Physical Location & Seq

Genomic Coordinates Reverse (-)

721227 .. 724970

Gene Structure 3744 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1009800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1143 bp

ATGGTATCAGGATTATTTGTTATGGAGTCTTCTTCCTCTTCTTCTTGTCCTTCCCAGTTGCTGTCGTCCCGGTTGATATTATGTGTTTGTGTTGTAGTTTTTGGTGTTTTCCAGTACCCTACAGCCACAGAGGGACTGGTGAAGCTGCCACCAAACCAGACTGTTCCGGCGGTGATAGTGTTCGGCGATTCGATCATGGACACGGGCAACAACAATGATCTCGAGTCACTTGTTAGGTGCAATTTCCCTCCTTATGGACTAGATTTCCAGCAGCACATGCCTAGTGGCAGGTTTGGCAATGGCAAAGTGCCCTCAGACCTCATAGCGTCAGAATTGGGAATCCGAGAGTATTTGCCGGCATATTTGGATCCAAATCTACGACCTCAAGATCTCCCCACTGGAGTTGTCTTTGCATCAGGTGGTACCGGATTTGACCCTATGACACCCCAAATAGCGTCAGTTATATCAATGGATGATCAGTTGAAAATGTTCAAAGAGTATATAGCGAAGCTCAAGGGCGTTGTTGGAGAAGAGAGAACCGAGTTCATCCTATCCAAGGCTCTAGTTCTGGTGGTTTCCGGCAGTGATGACATCGCCAACACCTATTTTGGCATTCGCATAAGACAAGCGCAGTATAGTGTTCCTGCTTACACTGACCTCATGGTCAACTCTGCATCTAGTTTCGTCAAGGAATTGTACAAACTTGGGGTGAGAAGGATTGGCGTGTTCAGTGCACCACCAATAGGATGTGTGCCTTCACAAAGAACTTTGGGTGGAGGAATTCTGAGAGGTTGTGCAGAAGAACACAACGACGCGGCAAAGTTATTCAACATCAAACTGTCCAGCTCACTCAACTCCTTAAGCTCCGCCCTGTCTGGCAGTAAAATCGTCTACGTGGATGTTTACAATCCACTGCTTGATATCATTCTCAACCCTGCCAAATATGGTTTTAAAGTTGTGGATCAAGGTTGCTGTGGTACGGGGGAAATAGAGGTAGCAGTGTTATGCAACAAGTACGATTCTACGTGTGAAAATCGATCCGATTATGTGTTTTGGGACAGTTATCATCCTACAGAAGGAACCTACAACATACTCATCCCTTCACTTATCAATAAATATATTAACAACTTCTTGAGCGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lipase_GDSL

Protein Analysis

381

Amino Acids

41.34

Weight (kDa)

5.05

Isoelectric Point (pI)

40.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lipase_GDSL	PF00657	58 - 365	1.5e-27	GDSL-like Lipase/Acylhydrolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001158)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G58520 AT1G58525 AT1G58725 AT1G59030 AT1G59406 AT1G75880 AT1G75880 AT1G75890 AT1G75890 AT1G75890 AT1G75900 AT3G14820 AT3G43550 AT3G43570 AT5G42170
fragaria_vesca	FvH4_2g38112 FvH4_2g38120
malus_domestica	MD08G1009700.v1.1 MD08G1009800.v1.1 MD15G1008800.v1.1 MD15G1008900.v1.1 MD15G1009000.v1.1 MD15G1009100.v1.1 MD15G1009500.v1.1 MD15G1009600.v1.1
prunus_persica	Prupe.1G361800_v2.0.a1 Prupe.1G361800_v2.0.a1 Prupe.1G361900_v2.0.a1 Prupe.1G361900_v2.0.a1 Prupe.1G361900_v2.0.a1 Prupe.1G361900_v2.0.a1 Prupe.1G362000_v2.0.a1 Prupe.1G362100_v2.0.a1
pyrus_communis	pycom08g00820 pycom08g00830 pycom15g00730 pycom15g00740 pycom15g00750 pycom15g00760 pycom15g00770
rosa_chinensis	RchiOBHm_Chr6g0303381 RchiOBHm_Chr6g0303411
rosa_laevigata	RLG00000011087 RLG00000011088
rosa_multiflora	Rmu_sc0002586.1_g000041 Rmu_ssc0000114.1_g000055 Rmu_ssc0000114.1_g000059
rosa_roxburghii	Rroxscaffold_7G00164790 Rroxscaffold_7G00164830
rosa_rugosa	Rorug06G0321000
rosa_samantha	Rh6AG435300 Rh6AG435400 Rh6CG447300 Rh6CG447500 Rh6DG434100 Rh6DG434200
rosa_wichuraiana	Rw6G037690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	662
Acc36I	ACCTGC	1 cut(s)	279
Acc65I	GGTACC	1 cut(s)	422
AccB1I	GGYRCC	1 cut(s)	422
AccI	GTMKAC	1 cut(s)	891
AccII	CGCG	1 cut(s)	815
AciI	CCGC	3 cut(s)	170, 815, 867
AclWI	GGATC	4 cut(s)	362, 375, 969, 1032
AcsI	RAATTY	1 cut(s)	780
AfaI	GTAC	5 cut(s)	116, 424, 698, 979, 1016
AfiI	CCNNNNNNNGG	4 cut(s)	254, 556, 743, 1076
AflII	CTTAAG	1 cut(s)	859
AflIII	ACRYGT	1 cut(s)	1025
AgsI	TTSAA	3 cut(s)	484, 493, 829
AluBI	AGCT	4 cut(s)	145, 511, 846, 864
AluI	AGCT	4 cut(s)	145, 511, 846, 864
Alw21I	GWGCWC	1 cut(s)	736
Alw44I	GTGCAC	1 cut(s)	732
AlwI	GGATC	4 cut(s)	362, 375, 969, 1032
AlwNI	CAGNNNCTG	1 cut(s)	61
Ama87I	CYCGRG	1 cut(s)	221
ApaLI	GTGCAC	1 cut(s)	732
ApeKI	GCWGC	2 cut(s)	145, 271
ApoI	RAATTY	1 cut(s)	780
Asp700I	GAANNNNTTC	1 cut(s)	488
Asp718I	GGTACC	1 cut(s)	422
AspLEI	GCGC	1 cut(s)	631
AsuC2I	CCSGG	1 cut(s)	70
AsuHPI	GGTGA	3 cut(s)	151, 184, 721
AvaI	CYCGRG	1 cut(s)	221
BaeGI	GKGCMC	2 cut(s)	312, 736
BamHI	GGATCC	1 cut(s)	367
BanI	GGYRCC	1 cut(s)	422
BbsI	GAAGAC	1 cut(s)	21
Bbv12I	GWGCWC	1 cut(s)	736
BbvI	GCAGC	2 cut(s)	132, 283
BcgI	CGANNNNNNTGC	2 cut(s)	868, 902
BclI	TGATCA	1 cut(s)	475
BcnI	CCSGG	1 cut(s)	70
BfaI	CTAG	4 cut(s)	260, 282, 563, 678
BfmI	CTRYAG	2 cut(s)	120, 1071
BfrI	CTTAAG	1 cut(s)	859
BfuAI	ACCTGC	1 cut(s)	279
BglII	AGATCT	1 cut(s)	388
BisI	GCNGC	3 cut(s)	146, 272, 816
BlsI	GCNGC	3 cut(s)	147, 273, 817
Bme1390I	CCNGG	1 cut(s)	70
BmeT110I	CYCGRG	1 cut(s)	221
BmiI	GGNNCC	3 cut(s)	369, 424, 1081
BmrFI	CCNGG	1 cut(s)	70
BmrI	ACTGGG	1 cut(s)	49
BmsI	GCATC	2 cut(s)	422, 683
BmuI	ACTGGG	1 cut(s)	49
BpiI	GAAGAC	1 cut(s)	21
BpmI	CTGGAG	1 cut(s)	420
BpuEI	CTTGAG	2 cut(s)	369, 497
BpuMI	CCSGG	1 cut(s)	70
Bsa29I	ATCGAT	1 cut(s)	1036
BsaAI	YACGTR	2 cut(s)	895, 1026
BsaBI	GATNNNNATC	1 cut(s)	372
BsaJI	CCNNGG	1 cut(s)	555
BsaWI	WCCGGW	1 cut(s)	425
Bsc4I	CCNNNNNNNGG	4 cut(s)	254, 556, 743, 1076
Bse118I	RCCGGY	1 cut(s)	355
Bse1I	ACTGG	4 cut(s)	55, 112, 141, 403
Bse3DI	GCAATG	1 cut(s)	304
Bse8I	GATNNNNATC	1 cut(s)	372
BseCI	ATCGAT	1 cut(s)	1036
BseDI	CCNNGG	1 cut(s)	555
BseGI	GGATG	6 cut(s)	478, 546, 752, 904, 1066, 1095
BseJI	GATNNNNATC	1 cut(s)	372
BseLI	CCNNNNNNNGG	4 cut(s)	254, 556, 743, 1076
BseMI	GCAATG	1 cut(s)	304
BseMII	CTCAG	2 cut(s)	327, 776
BseNI	ACTGG	4 cut(s)	55, 112, 141, 403
BseSI	GKGCMC	2 cut(s)	312, 736
BseXI	GCAGC	2 cut(s)	132, 283
BsgI	GTGCAG	1 cut(s)	816
Bsh1236I	CGCG	1 cut(s)	815
BshNI	GGYRCC	1 cut(s)	422
BshVI	ATCGAT	1 cut(s)	1036
BsiHKAI	GWGCWC	1 cut(s)	736
BsiHKCI	CYCGRG	1 cut(s)	221
BsiSI	CCGG	5 cut(s)	70, 167, 356, 426, 579
BslFI	GGGAC	3 cut(s)	52, 147, 1070
BslI	CCNNNNNNNGG	4 cut(s)	254, 556, 743, 1076
BsmFI	GGGAC	3 cut(s)	52, 147, 1070
BsmI	GAATGC	1 cut(s)	612
BsoBI	CYCGRG	1 cut(s)	221
Bsp1286I	GDGCHC	2 cut(s)	312, 736
Bsp1407I	TGTACA	1 cut(s)	696
Bsp143I	GATC	7 cut(s)	192, 217, 367, 388, 475, 961, 1037
BspACI	CCGC	3 cut(s)	170, 815, 867
BspCNI	CTCAG	2 cut(s)	326, 777
BspDI	ATCGAT	1 cut(s)	1036
BspFNI	CGCG	1 cut(s)	815
BspLI	GGNNCC	3 cut(s)	369, 424, 1081
BspMI	ACCTGC	1 cut(s)	279
BspPI	GGATC	4 cut(s)	362, 375, 969, 1032
BspT107I	GGYRCC	1 cut(s)	422
BspTI	CTTAAG	1 cut(s)	859
BsrDI	GCAATG	1 cut(s)	304
BsrFI	RCCGGY	1 cut(s)	355
BsrGI	TGTACA	1 cut(s)	696
BsrI	ACTGG	4 cut(s)	55, 112, 141, 403
BssAI	RCCGGY	1 cut(s)	355
BssECI	CCNNGG	1 cut(s)	555
BssMI	GATC	7 cut(s)	192, 217, 367, 388, 475, 961, 1037
BssT1I	CCWWGG	1 cut(s)	555
Bst4CI	ACNGT	3 cut(s)	163, 840, 1061
Bst6I	CTCTTC	2 cut(s)	43, 525
BstAFI	CTTAAG	1 cut(s)	859
BstAPI	GCANNNNNTGC	1 cut(s)	277
BstAUI	TGTACA	1 cut(s)	696
BstBAI	YACGTR	2 cut(s)	895, 1026
BstC8I	GCNNGC	1 cut(s)	357
BstDEI	CTNAG	2 cut(s)	313, 785
BstENI	CCTNNNNNAGG	2 cut(s)	554, 1074
BstF5I	GGATG	6 cut(s)	478, 546, 752, 904, 1066, 1095
BstFNI	CGCG	1 cut(s)	815
BstHHI	GCGC	1 cut(s)	631
BstKTI	GATC	7 cut(s)	195, 220, 370, 391, 478, 964, 1040
BstMBI	GATC	7 cut(s)	192, 217, 367, 388, 475, 961, 1037
BstMWI	GCNNNNNNNGC	2 cut(s)	277, 294
BstNSI	RCATGY	1 cut(s)	280
BstSCI	CCNGG	1 cut(s)	68
BstSFI	CTRYAG	2 cut(s)	120, 1071
BstSLI	GKGCMC	2 cut(s)	312, 736
BstUI	CGCG	1 cut(s)	815
BstV1I	GCAGC	2 cut(s)	132, 283
BstV2I	GAAGAC	1 cut(s)	21
BstX2I	RGATCY	2 cut(s)	367, 388
BstYI	RGATCY	2 cut(s)	367, 388
Bsu15I	ATCGAT	1 cut(s)	1036
BsuTUI	ATCGAT	1 cut(s)	1036
BtgZI	GCGATG	1 cut(s)	577
BtsCI	GGATG	6 cut(s)	478, 546, 752, 904, 1066, 1095
BtsI	GCAGTG	3 cut(s)	589, 911, 1005
BtsIMutI	CAGTG	6 cut(s)	396, 589, 651, 736, 911, 1005
BveI	ACCTGC	1 cut(s)	279
Cac8I	GCNNGC	1 cut(s)	357
CaiI	CAGNNNCTG	1 cut(s)	61
CfoI	GCGC	1 cut(s)	631
Cfr10I	RCCGGY	1 cut(s)	355
ClaI	ATCGAT	1 cut(s)	1036
CseI	GACGC	3 cut(s)	315, 444, 821
Csp6I	GTAC	5 cut(s)	115, 423, 697, 978, 1015
CspCI	CAANNNNNGTGG	2 cut(s)	385, 420
CviAII	CATG	3 cut(s)	196, 277, 661
CviJI	RGCY	6 cut(s)	125, 145, 511, 560, 846, 864
CviKI_1	RGCY	6 cut(s)	125, 145, 511, 560, 846, 864
CviQI	GTAC	5 cut(s)	115, 423, 697, 978, 1015
DdeI	CTNAG	2 cut(s)	313, 785
DpnI	GATC	7 cut(s)	194, 219, 369, 390, 477, 963, 1039
DpnII	GATC	7 cut(s)	192, 217, 367, 388, 475, 961, 1037
DraI	TTTAAA	1 cut(s)	952
DrdI	GACNNNNNNGTC	1 cut(s)	662
DseDI	GACNNNNNNGTC	1 cut(s)	662
Eam1104I	CTCTTC	2 cut(s)	43, 525
EarI	CTCTTC	2 cut(s)	43, 525
EciI	GGCGGA	1 cut(s)	856
Eco130I	CCWWGG	1 cut(s)	555
Eco32I	GATATC	1 cut(s)	922
Eco88I	CYCGRG	1 cut(s)	221
EcoNI	CCTNNNNNAGG	2 cut(s)	554, 1074
EcoRI	GAATTC	1 cut(s)	780
EcoRV	GATATC	1 cut(s)	922
EcoT14I	CCWWGG	1 cut(s)	555
ErhI	CCWWGG	1 cut(s)	555
FaeI	CATG	3 cut(s)	199, 280, 664
FaqI	GGGAC	3 cut(s)	52, 147, 1070
FatI	CATG	3 cut(s)	195, 276, 660
FbaI	TGATCA	1 cut(s)	475
FblI	GTMKAC	1 cut(s)	891
Fnu4HI	GCNGC	3 cut(s)	146, 272, 816
FokI	GGATG	6 cut(s)	485, 533, 759, 911, 1053, 1082
Fsp4HI	GCNGC	3 cut(s)	146, 272, 816
FspBI	CTAG	4 cut(s)	260, 282, 563, 678
GlaI	GCGC	1 cut(s)	630
GluI	GCNGC	3 cut(s)	146, 272, 816
GsuI	CTGGAG	1 cut(s)	420
HapII	CCGG	5 cut(s)	70, 167, 356, 426, 579
HgaI	GACGC	3 cut(s)	315, 444, 821
HhaI	GCGC	1 cut(s)	631
Hin1II	CATG	3 cut(s)	199, 280, 664
Hin6I	GCGC	1 cut(s)	629
HinP1I	GCGC	1 cut(s)	629
HincII	GTYRAC	1 cut(s)	667
HindII	GTYRAC	1 cut(s)	667
HinfI	GANTC	5 cut(s)	26, 188, 224, 339, 1019
HpaII	CCGG	5 cut(s)	70, 167, 356, 426, 579
HphI	GGTGA	3 cut(s)	151, 184, 721
Hpy166II	GTNNAC	4 cut(s)	667, 734, 892, 904
Hpy188I	TCNGA	5 cut(s)	316, 331, 344, 786, 1042
Hpy188III	TCNNGA	4 cut(s)	9, 221, 386, 1132
Hpy8I	GTNNAC	4 cut(s)	667, 734, 892, 904
Hpy99I	CGWCG	1 cut(s)	815
HpyAV	CCTTC	5 cut(s)	60, 708, 765, 1070, 1110
HpyCH4III	ACNGT	3 cut(s)	163, 840, 1061
HpyCH4IV	ACGT	2 cut(s)	894, 1025
HpyCH4V	TGCA	6 cut(s)	240, 413, 674, 734, 797, 1008
HpyF10VI	GCNNNNNNNGC	2 cut(s)	277, 294
HpyF3I	CTNAG	2 cut(s)	313, 785
HpySE526I	ACGT	2 cut(s)	894, 1025
Hsp92II	CATG	3 cut(s)	199, 280, 664
HspAI	GCGC	1 cut(s)	629
KpnI	GGTACC	1 cut(s)	426
KroI	GCCGGC	1 cut(s)	355
KroNI	GCCGGC	1 cut(s)	357
Ksp22I	TGATCA	1 cut(s)	475
Kzo9I	GATC	7 cut(s)	192, 217, 367, 388, 475, 961, 1037
LmnI	GCTCC	1 cut(s)	869
Lsp1109I	GCAGC	2 cut(s)	132, 283
LweI	GCATC	2 cut(s)	422, 683
MaeI	CTAG	4 cut(s)	260, 282, 563, 678
MaeII	ACGT	2 cut(s)	894, 1025
MaeIII	GTNAC	1 cut(s)	225
MalI	GATC	7 cut(s)	194, 219, 369, 390, 477, 963, 1039
MboI	GATC	7 cut(s)	192, 217, 367, 388, 475, 961, 1037
MboII	GAAGA	6 cut(s)	21, 24, 30, 33, 542, 812
MflI	RGATCY	2 cut(s)	367, 388
MhlI	GDGCHC	2 cut(s)	312, 736
MluCI	AATT	4 cut(s)	241, 332, 692, 780
MlyI	GAGTC	2 cut(s)	35, 233
MmeI	TCCRAC	1 cut(s)	505
MroNI	GCCGGC	1 cut(s)	355
MroXI	GAANNNNTTC	1 cut(s)	488
MseI	TTAA	3 cut(s)	860, 951, 1122
MspCI	CTTAAG	1 cut(s)	859
MspI	CCGG	5 cut(s)	70, 167, 356, 426, 579
MspR9I	CCNGG	1 cut(s)	70
Mva1269I	GAATGC	1 cut(s)	612
MvnI	CGCG	1 cut(s)	815
MwoI	GCNNNNNNNGC	2 cut(s)	277, 294
NaeI	GCCGGC	1 cut(s)	357
NciI	CCSGG	1 cut(s)	70
NdeII	GATC	7 cut(s)	192, 217, 367, 388, 475, 961, 1037
NgoMIV	GCCGGC	1 cut(s)	355
NlaIII	CATG	3 cut(s)	199, 280, 664
NlaIV	GGNNCC	3 cut(s)	369, 424, 1081
NmuCI	GTSAC	1 cut(s)	225
NspI	RCATGY	1 cut(s)	280
PaeR7I	CTCGAG	1 cut(s)	221
PctI	GAATGC	1 cut(s)	612
PdiI	GCCGGC	1 cut(s)	357
PdmI	GAANNNNTTC	1 cut(s)	488
PfeI	GAWTC	3 cut(s)	188, 339, 1019
PkrI	GCNGC	3 cut(s)	147, 273, 817
PleI	GAGTC	2 cut(s)	34, 232
PpsI	GAGTC	2 cut(s)	34, 232
Ppu21I	YACGTR	2 cut(s)	895, 1026
PspN4I	GGNNCC	3 cut(s)	369, 424, 1081
PstNI	CAGNNNCTG	1 cut(s)	61
PsuI	RGATCY	2 cut(s)	367, 388
RsaI	GTAC	5 cut(s)	116, 424, 698, 979, 1016
RsaNI	GTAC	5 cut(s)	115, 423, 697, 978, 1015
SaqAI	TTAA	3 cut(s)	860, 951, 1122
SatI	GCNGC	3 cut(s)	146, 272, 816
Sau3AI	GATC	7 cut(s)	192, 217, 367, 388, 475, 961, 1037
SchI	GAGTC	2 cut(s)	35, 233
ScrFI	CCNGG	1 cut(s)	70
SduI	GDGCHC	2 cut(s)	312, 736
SfaNI	GCATC	2 cut(s)	422, 683
SfcI	CTRYAG	2 cut(s)	120, 1071
Sfr274I	CTCGAG	1 cut(s)	221
SlaI	CTCGAG	1 cut(s)	221
SmlI	CTYRAG	5 cut(s)	221, 384, 512, 859, 1132
SmoI	CTYRAG	5 cut(s)	221, 384, 512, 859, 1132
Sse9I	AATT	4 cut(s)	241, 332, 692, 780
SsiI	CCGC	3 cut(s)	170, 815, 867
SspMI	CTAG	4 cut(s)	260, 282, 563, 678
StyD4I	CCNGG	1 cut(s)	68
StyI	CCWWGG	1 cut(s)	555
TaaI	ACNGT	3 cut(s)	163, 840, 1061
TaiI	ACGT	2 cut(s)	897, 1028
TaqI	TCGA	3 cut(s)	191, 222, 1036
TasI	AATT	4 cut(s)	241, 332, 692, 780
TatI	WGTACW	1 cut(s)	696
TauI	GCSGC	1 cut(s)	818
TfiI	GAWTC	3 cut(s)	188, 339, 1019
Tru1I	TTAA	3 cut(s)	860, 951, 1122
Tru9I	TTAA	3 cut(s)	860, 951, 1122
TscAI	CASTG	6 cut(s)	403, 589, 658, 736, 918, 1005
TseFI	GTSAC	1 cut(s)	225
TseI	GCWGC	2 cut(s)	145, 271
Tsp45I	GTSAC	1 cut(s)	225
TspDTI	ATGAA	1 cut(s)	535
TspRI	CASTG	6 cut(s)	403, 589, 658, 736, 918, 1005
Vha464I	CTTAAG	1 cut(s)	859
VneI	GTGCAC	1 cut(s)	732
XagI	CCTNNNNNAGG	2 cut(s)	554, 1074
XapI	RAATTY	1 cut(s)	780
XceI	RCATGY	1 cut(s)	280
XcmI	CCANNNNNNNNNTGG	1 cut(s)	133
XhoI	CTCGAG	1 cut(s)	221
XmiI	GTMKAC	1 cut(s)	891
XmnI	GAANNNNTTC	1 cut(s)	488
XspI	CTAG	4 cut(s)	260, 282, 563, 678

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.