Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001158

Physical Location & Seq

Genomic Coordinates Forward (+)

15448635 .. 15450057

Gene Structure 1423 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G43550.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 867 bp

ATGAAGCTTCAAATTATATGGCTCGCTTTGGTTTTAATCGCCGTTGAGACTTATGCAGTTAAGCAAGGGAAAAACGTAACGATCCCCGCGCTAATAGTTTTTGGAGATTCAATAATGGATACAGGAAATAACAATAATCTTCCCACTCTTCTTAAATGTAACTTCCCTCCATACGGTAAAGATTATCCTGGAGGCTTTGCCACTGGAAGATTTTCTGATGGAAGAGTTCCTTCTGATCTTATTGCGGAAAAATTGGGATTGGTTAAGACATTACCAGCATATATGAATCCATATTTGAAGCCACATGATCTTCTTAAAGGTGTAACATTTGCATCTGGAGGAACCGGTTATGATCCATTGACAGCAAAAATTATGTCAGTGATATCGGTGTGGGATCAACTCATATATTTCAAAGAATATATATCAAAGATCAAGAGGCATTTCGGAGAAGAAAAAGCCAAAGATATCTTGGAACATAGTTTCTTTCTCGTGGTGTCTAGTAGCAATGACCTTGCTCACACTTATTTAGCTCAAGCTCATAGATATGATCGTACCTCTTATGCCAATTTCTTGGCTGACTCTGCTGTTCATTTCGTGAGAGAATTACATAAGCTTGGAGCTCGAAAAATTGGAGTGTTTAGTGCAGTCCCTGTTGGTTGTGTTCCACTCCAAAGAACAGTTTTTGGAGGTTTCTTTACAAGAGGATGTAATCAACCTCTAAACAATATGGCAAAACAATTTAACGCAAGACTTTCTCCAGCACTAGATTCTTTAGATAAAGAGTTGGATGGTGTTATTATTTACATTAATGTTTATGATACTCTTTTTGACATGATCCAACATCCTAAAAAATATGGCAGGTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lipase_GDSL

Protein Analysis

288

Amino Acids

32.18

Weight (kDa)

9.14

Isoelectric Point (pI)

26.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lipase_GDSL	PF00657	32 - 273	2.6e-19	GDSL-like Lipase/Acylhydrolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001158)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G58520 AT1G58525 AT1G58725 AT1G59030 AT1G59406 AT1G75880 AT1G75880 AT1G75890 AT1G75890 AT1G75890 AT1G75900 AT3G14820 AT3G43550 AT3G43570 AT5G42170
fragaria_vesca	FvH4_2g38112 FvH4_2g38120
malus_domestica	MD08G1009700.v1.1 MD08G1009800.v1.1 MD15G1008800.v1.1 MD15G1008900.v1.1 MD15G1009000.v1.1 MD15G1009100.v1.1 MD15G1009500.v1.1 MD15G1009600.v1.1
prunus_persica	Prupe.1G361800_v2.0.a1 Prupe.1G361800_v2.0.a1 Prupe.1G361900_v2.0.a1 Prupe.1G361900_v2.0.a1 Prupe.1G361900_v2.0.a1 Prupe.1G361900_v2.0.a1 Prupe.1G362000_v2.0.a1 Prupe.1G362100_v2.0.a1
pyrus_communis	pycom08g00820 pycom08g00830 pycom15g00730 pycom15g00740 pycom15g00750 pycom15g00760 pycom15g00770
rosa_chinensis	RchiOBHm_Chr6g0303381 RchiOBHm_Chr6g0303411
rosa_laevigata	RLG00000011087 RLG00000011088
rosa_multiflora	Rmu_sc0002586.1_g000041 Rmu_ssc0000114.1_g000055 Rmu_ssc0000114.1_g000059
rosa_roxburghii	Rroxscaffold_7G00164790 Rroxscaffold_7G00164830
rosa_rugosa	Rorug06G0321000
rosa_samantha	Rh6AG435300 Rh6AG435400 Rh6CG447300 Rh6CG447500 Rh6DG434100 Rh6DG434200
rosa_wichuraiana	Rw6G037690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	849
AccII	CGCG	1 cut(s)	89
AciI	CCGC	2 cut(s)	87, 245
AclWI	GGATC	4 cut(s)	76, 347, 402, 829
AfaI	GTAC	1 cut(s)	553
AfiI	CCNNNNNNNGG	1 cut(s)	173
AgeI	ACCGGT	1 cut(s)	344
AgsI	TTSAA	4 cut(s)	11, 111, 298, 412
AjnI	CCWGG	1 cut(s)	187
AluBI	AGCT	5 cut(s)	7, 530, 536, 613, 620
AluI	AGCT	5 cut(s)	7, 530, 536, 613, 620
Alw21I	GWGCWC	1 cut(s)	622
Alw26I	GTCTC	1 cut(s)	41
AlwI	GGATC	4 cut(s)	76, 347, 402, 829
AlwNI	CAGNNNCTG	1 cut(s)	650
ArsI	GACNNNNNNTTYG	2 cut(s)	359, 391
AseI	ATTAAT	1 cut(s)	807
AsiGI	ACCGGT	1 cut(s)	344
Asp700I	GAANNNNTTC	1 cut(s)	211
AspLEI	GCGC	1 cut(s)	91
BanII	GRGCYC	1 cut(s)	622
BauI	CACGAG	1 cut(s)	488
Bbv12I	GWGCWC	1 cut(s)	622
BccI	CCATC	2 cut(s)	212, 782
BceAI	ACGGC	1 cut(s)	26
BciT130I	CCWGG	1 cut(s)	189
BciVI	GTATCC	1 cut(s)	112
BcoDI	GTCTC	1 cut(s)	41
BfaI	CTAG	2 cut(s)	498, 764
BfuAI	ACCTGC	1 cut(s)	849
BfuI	GTATCC	1 cut(s)	112
Bme1390I	CCNGG	1 cut(s)	189
BmiI	GGNNCC	1 cut(s)	343
BmrFI	CCNGG	1 cut(s)	189
BmsI	GCATC	1 cut(s)	341
BpmI	CTGGAG	3 cut(s)	210, 357, 741
BpuEI	CTTGAG	1 cut(s)	516
BsaWI	WCCGGW	1 cut(s)	344
Bsc4I	CCNNNNNNNGG	1 cut(s)	173
Bse118I	RCCGGY	1 cut(s)	344
Bse1I	ACTGG	1 cut(s)	208
Bse3DI	GCAATG	1 cut(s)	511
BseBI	CCWGG	1 cut(s)	189
BseGI	GGATG	3 cut(s)	710, 793, 841
BseLI	CCNNNNNNNGG	1 cut(s)	173
BseMI	GCAATG	1 cut(s)	511
BseNI	ACTGG	1 cut(s)	208
BsgI	GTGCAG	1 cut(s)	663
Bsh1236I	CGCG	1 cut(s)	89
BshTI	ACCGGT	1 cut(s)	344
BsiHKAI	GWGCWC	1 cut(s)	622
BsiSI	CCGG	1 cut(s)	345
BslFI	GGGAC	1 cut(s)	632
BslI	CCNNNNNNNGG	1 cut(s)	173
BsmAI	GTCTC	1 cut(s)	41
BsmFI	GGGAC	1 cut(s)	632
Bsp1286I	GDGCHC	1 cut(s)	622
Bsp143I	GATC	8 cut(s)	81, 235, 307, 352, 394, 429, 547, 834
BspACI	CCGC	2 cut(s)	87, 245
BspFNI	CGCG	1 cut(s)	89
BspLI	GGNNCC	1 cut(s)	343
BspMI	ACCTGC	1 cut(s)	849
BspPI	GGATC	4 cut(s)	76, 347, 402, 829
BsrDI	GCAATG	1 cut(s)	511
BsrFI	RCCGGY	1 cut(s)	344
BsrI	ACTGG	1 cut(s)	208
BssAI	RCCGGY	1 cut(s)	344
BssMI	GATC	8 cut(s)	81, 235, 307, 352, 394, 429, 547, 834
BssSI	CACGAG	1 cut(s)	488
Bst2BI	CACGAG	1 cut(s)	488
Bst2UI	CCWGG	1 cut(s)	189
Bst4CI	ACNGT	2 cut(s)	176, 679
Bst6I	CTCTTC	2 cut(s)	153, 217
BstC8I	GCNNGC	1 cut(s)	24
BstF5I	GGATG	3 cut(s)	710, 793, 841
BstFNI	CGCG	1 cut(s)	89
BstHHI	GCGC	1 cut(s)	91
BstKTI	GATC	8 cut(s)	84, 238, 310, 355, 397, 432, 550, 837
BstMAI	GTCTC	1 cut(s)	41
BstMBI	GATC	8 cut(s)	81, 235, 307, 352, 394, 429, 547, 834
BstMWI	GCNNNNNNNGC	1 cut(s)	581
BstNI	CCWGG	1 cut(s)	189
BstSCI	CCNGG	1 cut(s)	187
BstUI	CGCG	1 cut(s)	89
BstXI	CCANNNNNNTGG	1 cut(s)	571
BsuI	GTATCC	1 cut(s)	112
BtsCI	GGATG	3 cut(s)	710, 793, 841
BtsIMutI	CAGTG	2 cut(s)	201, 384
BveI	ACCTGC	1 cut(s)	849
Cac8I	GCNNGC	1 cut(s)	24
CaiI	CAGNNNCTG	1 cut(s)	650
CfoI	GCGC	1 cut(s)	91
Cfr10I	RCCGGY	1 cut(s)	344
Csp6I	GTAC	1 cut(s)	552
CspAI	ACCGGT	1 cut(s)	344
CviAII	CATG	2 cut(s)	305, 832
CviQI	GTAC	1 cut(s)	552
DpnI	GATC	8 cut(s)	83, 237, 309, 354, 396, 431, 549, 836
DpnII	GATC	8 cut(s)	81, 235, 307, 352, 394, 429, 547, 834
Eam1104I	CTCTTC	2 cut(s)	153, 217
EarI	CTCTTC	2 cut(s)	153, 217
Ecl136II	GAGCTC	1 cut(s)	620
Eco24I	GRGCYC	1 cut(s)	622
Eco32I	GATATC	2 cut(s)	384, 466
Eco53kI	GAGCTC	1 cut(s)	620
EcoICRI	GAGCTC	1 cut(s)	620
EcoRII	CCWGG	1 cut(s)	187
EcoRV	GATATC	2 cut(s)	384, 466
EcoT38I	GRGCYC	1 cut(s)	622
FaeI	CATG	2 cut(s)	308, 835
FalI	AAGNNNNNCTT	2 cut(s)	214, 246
FaqI	GGGAC	1 cut(s)	632
FatI	CATG	2 cut(s)	304, 831
FauI	CCCGC	1 cut(s)	94
FokI	GGATG	3 cut(s)	717, 800, 828
FriOI	GRGCYC	1 cut(s)	622
FspBI	CTAG	2 cut(s)	498, 764
GlaI	GCGC	1 cut(s)	90
GsuI	CTGGAG	3 cut(s)	210, 357, 741
HapII	CCGG	1 cut(s)	345
HhaI	GCGC	1 cut(s)	91
Hin1II	CATG	2 cut(s)	308, 835
Hin6I	GCGC	1 cut(s)	89
HinP1I	GCGC	1 cut(s)	89
HindIII	AAGCTT	2 cut(s)	5, 611
HinfI	GANTC	4 cut(s)	107, 286, 578, 767
HpaII	CCGG	1 cut(s)	345
Hpy188I	TCNGA	3 cut(s)	217, 235, 446
Hpy188III	TCNNGA	3 cut(s)	336, 433, 595
HpyAV	CCTTC	1 cut(s)	240
HpyCH4III	ACNGT	2 cut(s)	176, 679
HpyCH4IV	ACGT	1 cut(s)	75
HpyCH4V	TGCA	3 cut(s)	56, 332, 644
HpyF10VI	GCNNNNNNNGC	1 cut(s)	581
HpySE526I	ACGT	1 cut(s)	75
Hsp92II	CATG	2 cut(s)	308, 835
HspAI	GCGC	1 cut(s)	89
Kzo9I	GATC	8 cut(s)	81, 235, 307, 352, 394, 429, 547, 834
LmnI	GCTCC	1 cut(s)	617
LweI	GCATC	1 cut(s)	341
MaeI	CTAG	2 cut(s)	498, 764
MaeII	ACGT	1 cut(s)	75
MaeIII	GTNAC	3 cut(s)	76, 158, 322
MalI	GATC	8 cut(s)	83, 237, 309, 354, 396, 431, 549, 836
MboI	GATC	8 cut(s)	81, 235, 307, 352, 394, 429, 547, 834
MboII	GAAGA	6 cut(s)	131, 140, 219, 234, 302, 461
MhlI	GDGCHC	1 cut(s)	622
MluCI	AATT	7 cut(s)	12, 251, 369, 565, 602, 627, 737
MlyI	GAGTC	1 cut(s)	572
MmeI	TCCRAC	2 cut(s)	765, 862
MnlI	CCTC	8 cut(s)	177, 185, 332, 429, 565, 680, 695, 726
MroXI	GAANNNNTTC	1 cut(s)	211
MseI	TTAA	7 cut(s)	35, 60, 153, 264, 315, 741, 807
MslI	CAYNNNNRTG	1 cut(s)	543
MspI	CCGG	1 cut(s)	345
MspR9I	CCNGG	1 cut(s)	189
MvaI	CCWGG	1 cut(s)	189
MvnI	CGCG	1 cut(s)	89
MwoI	GCNNNNNNNGC	1 cut(s)	581
NdeII	GATC	8 cut(s)	81, 235, 307, 352, 394, 429, 547, 834
NlaIII	CATG	2 cut(s)	308, 835
NlaIV	GGNNCC	1 cut(s)	343
PdmI	GAANNNNTTC	1 cut(s)	211
PfeI	GAWTC	3 cut(s)	107, 286, 767
PfoI	TCCNGGA	1 cut(s)	187
PinAI	ACCGGT	1 cut(s)	344
PleI	GAGTC	1 cut(s)	572
PpsI	GAGTC	1 cut(s)	572
PshBI	ATTAAT	1 cut(s)	807
Psp124BI	GAGCTC	1 cut(s)	622
Psp6I	CCWGG	1 cut(s)	187
PspGI	CCWGG	1 cut(s)	187
PspN4I	GGNNCC	1 cut(s)	343
PstNI	CAGNNNCTG	1 cut(s)	650
RsaI	GTAC	1 cut(s)	553
RsaNI	GTAC	1 cut(s)	552
RseI	CAYNNNNRTG	1 cut(s)	543
SacI	GAGCTC	1 cut(s)	622
SaqAI	TTAA	7 cut(s)	35, 60, 153, 264, 315, 741, 807
Sau3AI	GATC	8 cut(s)	81, 235, 307, 352, 394, 429, 547, 834
SchI	GAGTC	1 cut(s)	572
ScrFI	CCNGG	1 cut(s)	189
SduI	GDGCHC	1 cut(s)	622
SfaNI	GCATC	1 cut(s)	341
SmiMI	CAYNNNNRTG	1 cut(s)	543
SmlI	CTYRAG	1 cut(s)	531
SmoI	CTYRAG	1 cut(s)	531
Sse9I	AATT	7 cut(s)	12, 251, 369, 565, 602, 627, 737
SsiI	CCGC	2 cut(s)	87, 245
SspMI	CTAG	2 cut(s)	498, 764
SstI	GAGCTC	1 cut(s)	622
StyD4I	CCNGG	1 cut(s)	187
TaaI	ACNGT	2 cut(s)	176, 679
TaiI	ACGT	1 cut(s)	78
TaqI	TCGA	1 cut(s)	622
TasI	AATT	7 cut(s)	12, 251, 369, 565, 602, 627, 737
TfiI	GAWTC	3 cut(s)	107, 286, 767
Tru1I	TTAA	7 cut(s)	35, 60, 153, 264, 315, 741, 807
Tru9I	TTAA	7 cut(s)	35, 60, 153, 264, 315, 741, 807
TscAI	CASTG	2 cut(s)	208, 384
TspDTI	ATGAA	3 cut(s)	17, 299, 578
TspRI	CASTG	2 cut(s)	208, 384
VspI	ATTAAT	1 cut(s)	807
XcmI	CCANNNNNNNNNTGG	1 cut(s)	466
XmnI	GAANNNNTTC	1 cut(s)	211
XspI	CTAG	2 cut(s)	498, 764

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.