Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0001158

Physical Location & Seq

Genomic Coordinates Forward (+)

61284139 .. 61288108

Gene Structure 3970 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG434200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1098 bp

ATGGATGCAGCACGAGCAATAGTACCGTGTATTCTTTGTTATATTCTGATGTGCAATGATAGCGTCGGAGAGGGTTTAACCCTGAAGCAGATGAAGCTTAAAATACCAGCGAACGTAAGTGTTCCGGCAGTGATTGTGTTTGGAGATTCAGTAGTTGATACGGGCAACAACAACAACAACTTCAAAACATTTGCTCGCTGCAATTTCCTCCCTTATGGCATAGACTTCCAAGGTGGACTTCCAACCGGACGATTCTCAAATGGAAAGGTTCCTGCTGACCTTTTAGTGGAAGCATTGGGAATTAAGGAGCTGTTGCCACCCTATATGGATCCATCCCTAGAGCCTAATGATCTCCTTACTGGTATTAACTTGGCTGCTGGAGGTGTAGGTTATGACCCTTTGACATCAGAAGTCGCGGCAGTTGAATCACTGTCCGATCAGCTGGAACAGTTCAAAGGGTACATAGAAAAGCTGAAAGGAATCGTCGGAGAAAAGAGAACAAACTTCATCATATCAAATAGTTTGATTTTAGTGGTAGCAGGAAGCAACGACATTTCGAGTACCTATTTTGTTAGTGGTATCAGGAAATTGCATTTCGATGTTCCTTCTTACACCGACTTCATGCTCAACCATGCTTCACAATTCTTCAAGGAATTATATGGATTGGGGGCACGAAGAATAGGCGTTTTTGGTGTACCACCTATTGGGTGTGTGCCATCCCAAAGAACAATTGGAGGAGGCATCGGAAGACATTGTGCCGAGGATCAAAACCAAGCAGCGGAGCTCTTCAACTCCAAACTATCTGCAGAGACGAATCACCTTAGACACACACTCCCCAACTCAAAGTTCGTTTACATAGACGTCTACAACCCATTTCTTGATATCATCACAAACTCTAATAAATACGGGTTTGAAGTTGCAGACAAAGGGTGTTGTGGTACTGGTTTGGTGGAAGTAACAAAACTGTGCAACCAGTTTCAGCGAACCTGTACGGACACCTCCAAATATGTCTTTTGGGATAGTTACCATCCAACTGAAAGAGCATACAGGATCCTTCTACAGCAAGTCCTCACGCAATCTGCAAGCGGTTTCTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lipase_GDSL

Protein Analysis

365

Amino Acids

39.96

Weight (kDa)

5.9

Isoelectric Point (pI)

22.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lipase_GDSL	PF00657	44 - 354	2.7e-32	GDSL-like Lipase/Acylhydrolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001158)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G58520 AT1G58525 AT1G58725 AT1G59030 AT1G59406 AT1G75880 AT1G75880 AT1G75890 AT1G75890 AT1G75890 AT1G75900 AT3G14820 AT3G43550 AT3G43570 AT5G42170
fragaria_vesca	FvH4_2g38112 FvH4_2g38120
malus_domestica	MD08G1009700.v1.1 MD08G1009800.v1.1 MD15G1008800.v1.1 MD15G1008900.v1.1 MD15G1009000.v1.1 MD15G1009100.v1.1 MD15G1009500.v1.1 MD15G1009600.v1.1
prunus_persica	Prupe.1G361800_v2.0.a1 Prupe.1G361800_v2.0.a1 Prupe.1G361900_v2.0.a1 Prupe.1G361900_v2.0.a1 Prupe.1G361900_v2.0.a1 Prupe.1G361900_v2.0.a1 Prupe.1G362000_v2.0.a1 Prupe.1G362100_v2.0.a1
pyrus_communis	pycom08g00820 pycom08g00830 pycom15g00730 pycom15g00740 pycom15g00750 pycom15g00760 pycom15g00770
rosa_chinensis	RchiOBHm_Chr6g0303381 RchiOBHm_Chr6g0303411
rosa_laevigata	RLG00000011087 RLG00000011088
rosa_multiflora	Rmu_sc0002586.1_g000041 Rmu_ssc0000114.1_g000055 Rmu_ssc0000114.1_g000059
rosa_roxburghii	Rroxscaffold_7G00164790 Rroxscaffold_7G00164830
rosa_rugosa	Rorug06G0321000
rosa_samantha	Rh6AG435300 Rh6AG435400 Rh6CG447300 Rh6CG447500 Rh6DG434100 Rh6DG434200
rosa_wichuraiana	Rw6G037690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	864
AccB7I	CCANNNNNTGG	1 cut(s)	704
AccI	GTMKAC	1 cut(s)	864
AccII	CGCG	1 cut(s)	416
AciI	CCGC	3 cut(s)	416, 779, 1086
AclWI	GGATC	5 cut(s)	323, 336, 771, 1045, 1058
AcuI	CTGAAG	1 cut(s)	104
AcyI	GRCGYC	1 cut(s)	861
AfaI	GTAC	6 cut(s)	24, 461, 562, 696, 940, 991
AfiI	CCNNNNNNNGG	3 cut(s)	286, 704, 778
AgsI	TTSAA	6 cut(s)	184, 425, 454, 649, 790, 914
AjuI	GAANNNNNNNTTGG	4 cut(s)	222, 254, 830, 862
AluBI	AGCT	5 cut(s)	97, 310, 442, 472, 784
AluI	AGCT	5 cut(s)	97, 310, 442, 472, 784
Alw21I	GWGCWC	1 cut(s)	786
Alw26I	GTCTC	1 cut(s)	803
AlwI	GGATC	5 cut(s)	323, 336, 771, 1045, 1058
ApeKI	GCWGC	4 cut(s)	8, 198, 374, 776
AsuHPI	GGTGA	1 cut(s)	809
BaeGI	GKGCMC	1 cut(s)	673
BamHI	GGATCC	2 cut(s)	328, 1050
BanII	GRGCYC	1 cut(s)	786
BauI	CACGAG	1 cut(s)	12
BbsI	GAAGAC	1 cut(s)	754
Bbv12I	GWGCWC	1 cut(s)	786
BbvI	GCAGC	4 cut(s)	20, 185, 361, 788
BccI	CCATC	3 cut(s)	340, 724, 1035
BcoDI	GTCTC	1 cut(s)	803
BfaI	CTAG	1 cut(s)	338
BfmI	CTRYAG	2 cut(s)	804, 1058
BisI	GCNGC	5 cut(s)	9, 199, 375, 417, 777
BlsI	GCNGC	5 cut(s)	10, 200, 376, 418, 778
BmiI	GGNNCC	3 cut(s)	270, 330, 1052
BmsI	GCATC	1 cut(s)	750
BpiI	GAAGAC	1 cut(s)	754
BpmI	CTGGAG	1 cut(s)	399
BsaHI	GRCGYC	1 cut(s)	861
BsaJI	CCNNGG	2 cut(s)	229, 759
BsaWI	WCCGGW	1 cut(s)	245
BsaXI	ACNNNNNCTCC	4 cut(s)	135, 165, 816, 846
Bsc4I	CCNNNNNNNGG	3 cut(s)	286, 704, 778
Bse1I	ACTGG	3 cut(s)	364, 946, 973
Bse3DI	GCAATG	1 cut(s)	61
BseDI	CCNNGG	2 cut(s)	229, 759
BseGI	GGATG	4 cut(s)	10, 332, 716, 1027
BseLI	CCNNNNNNNGG	3 cut(s)	286, 704, 778
BseMI	GCAATG	1 cut(s)	61
BseNI	ACTGG	3 cut(s)	364, 946, 973
BseRI	GAGGAG	1 cut(s)	750
BseSI	GKGCMC	1 cut(s)	673
BseXI	GCAGC	4 cut(s)	20, 185, 361, 788
Bsh1236I	CGCG	1 cut(s)	416
BsiHKAI	GWGCWC	1 cut(s)	786
BsiSI	CCGG	2 cut(s)	125, 246
BslI	CCNNNNNNNGG	3 cut(s)	286, 704, 778
BsmAI	GTCTC	1 cut(s)	803
BsmBI	CGTCTC	1 cut(s)	803
Bsp1286I	GDGCHC	2 cut(s)	673, 786
Bsp143I	GATC	5 cut(s)	328, 349, 436, 763, 1050
BspACI	CCGC	3 cut(s)	416, 779, 1086
BspFNI	CGCG	1 cut(s)	416
BspLI	GGNNCC	3 cut(s)	270, 330, 1052
BspMAI	CTGCAG	1 cut(s)	808
BspPI	GGATC	5 cut(s)	323, 336, 771, 1045, 1058
BspQI	GCTCTTC	1 cut(s)	791
BsrDI	GCAATG	1 cut(s)	61
BsrI	ACTGG	3 cut(s)	364, 946, 973
BssECI	CCNNGG	2 cut(s)	229, 759
BssMI	GATC	5 cut(s)	328, 349, 436, 763, 1050
BssNI	GRCGYC	1 cut(s)	861
BssSI	CACGAG	1 cut(s)	12
BssT1I	CCWWGG	1 cut(s)	229
Bst2BI	CACGAG	1 cut(s)	12
Bst4CI	ACNGT	4 cut(s)	27, 432, 450, 966
Bst6I	CTCTTC	1 cut(s)	791
BstACI	GRCGYC	1 cut(s)	861
BstC8I	GCNNGC	2 cut(s)	196, 1084
BstDEI	CTNAG	1 cut(s)	821
BstF5I	GGATG	4 cut(s)	10, 332, 716, 1027
BstFNI	CGCG	1 cut(s)	416
BstKTI	GATC	5 cut(s)	331, 352, 439, 766, 1053
BstMAI	GTCTC	1 cut(s)	803
BstMBI	GATC	5 cut(s)	328, 349, 436, 763, 1050
BstMWI	GCNNNNNNNGC	3 cut(s)	14, 60, 94
BstSFI	CTRYAG	2 cut(s)	804, 1058
BstSLI	GKGCMC	1 cut(s)	673
BstUI	CGCG	1 cut(s)	416
BstV1I	GCAGC	4 cut(s)	20, 185, 361, 788
BstV2I	GAAGAC	1 cut(s)	754
BstX2I	RGATCY	2 cut(s)	328, 1050
BstYI	RGATCY	2 cut(s)	328, 1050
BtsCI	GGATG	4 cut(s)	10, 332, 716, 1027
BtsI	GCAGTG	1 cut(s)	135
BtsIMutI	CAGTG	2 cut(s)	135, 428
Cac8I	GCNNGC	2 cut(s)	196, 1084
CseI	GACGC	1 cut(s)	52
Csp6I	GTAC	6 cut(s)	23, 460, 561, 695, 939, 990
CviAII	CATG	2 cut(s)	622, 632
CviJI	RGCY	7 cut(s)	97, 310, 343, 374, 442, 472, 784
CviKI_1	RGCY	7 cut(s)	97, 310, 343, 374, 442, 472, 784
CviQI	GTAC	6 cut(s)	23, 460, 561, 695, 939, 990
DdeI	CTNAG	1 cut(s)	821
DpnI	GATC	5 cut(s)	330, 351, 438, 765, 1052
DpnII	GATC	5 cut(s)	328, 349, 436, 763, 1050
Eam1104I	CTCTTC	1 cut(s)	791
EarI	CTCTTC	1 cut(s)	791
Ecl136II	GAGCTC	1 cut(s)	784
Eco130I	CCWWGG	1 cut(s)	229
Eco24I	GRGCYC	1 cut(s)	786
Eco32I	GATATC	1 cut(s)	883
Eco53kI	GAGCTC	1 cut(s)	784
Eco57I	CTGAAG	1 cut(s)	104
EcoICRI	GAGCTC	1 cut(s)	784
EcoRV	GATATC	1 cut(s)	883
EcoT14I	CCWWGG	1 cut(s)	229
EcoT38I	GRGCYC	1 cut(s)	786
ErhI	CCWWGG	1 cut(s)	229
Esp3I	CGTCTC	1 cut(s)	803
FaeI	CATG	2 cut(s)	625, 635
FalI	AAGNNNNNCTT	2 cut(s)	222, 254
FatI	CATG	2 cut(s)	621, 631
FblI	GTMKAC	1 cut(s)	864
Fnu4HI	GCNGC	5 cut(s)	9, 199, 375, 417, 777
FokI	GGATG	4 cut(s)	17, 319, 703, 1014
FriOI	GRGCYC	1 cut(s)	786
Fsp4HI	GCNGC	5 cut(s)	9, 199, 375, 417, 777
FspBI	CTAG	1 cut(s)	338
GluI	GCNGC	5 cut(s)	9, 199, 375, 417, 777
GsuI	CTGGAG	1 cut(s)	399
HapII	CCGG	2 cut(s)	125, 246
HgaI	GACGC	1 cut(s)	52
Hin1I	GRCGYC	1 cut(s)	861
Hin1II	CATG	2 cut(s)	625, 635
HindIII	AAGCTT	1 cut(s)	95
HinfI	GANTC	5 cut(s)	146, 252, 425, 480, 814
HpaII	CCGG	2 cut(s)	125, 246
HphI	GGTGA	1 cut(s)	809
Hpy166II	GTNNAC	4 cut(s)	236, 695, 853, 865
Hpy188I	TCNGA	6 cut(s)	48, 68, 409, 436, 488, 746
Hpy188III	TCNNGA	2 cut(s)	583, 878
Hpy8I	GTNNAC	4 cut(s)	236, 695, 853, 865
Hpy99I	CGWCG	2 cut(s)	68, 488
HpyAV	CCTTC	2 cut(s)	615, 1064
HpyCH4III	ACNGT	4 cut(s)	27, 432, 450, 966
HpyCH4IV	ACGT	2 cut(s)	114, 861
HpyCH4V	TGCA	8 cut(s)	8, 54, 201, 592, 806, 920, 969, 1082
HpyF10VI	GCNNNNNNNGC	3 cut(s)	14, 60, 94
HpyF3I	CTNAG	1 cut(s)	821
HpySE526I	ACGT	2 cut(s)	114, 861
Hsp92I	GRCGYC	1 cut(s)	861
Hsp92II	CATG	2 cut(s)	625, 635
Kzo9I	GATC	5 cut(s)	328, 349, 436, 763, 1050
LguI	GCTCTTC	1 cut(s)	791
LmnI	GCTCC	2 cut(s)	307, 781
Lsp1109I	GCAGC	4 cut(s)	20, 185, 361, 788
LweI	GCATC	1 cut(s)	750
MaeI	CTAG	1 cut(s)	338
MaeII	ACGT	2 cut(s)	114, 861
MaeIII	GTNAC	2 cut(s)	955, 1022
MalI	GATC	5 cut(s)	330, 351, 438, 765, 1052
MboI	GATC	5 cut(s)	328, 349, 436, 763, 1050
MboII	GAAGA	4 cut(s)	637, 687, 759, 778
MfeI	CAATTG	1 cut(s)	729
MflI	RGATCY	2 cut(s)	328, 1050
MhlI	GDGCHC	2 cut(s)	673, 786
MluCI	AATT	6 cut(s)	202, 300, 587, 641, 653, 729
MmeI	TCCRAC	4 cut(s)	46, 266, 466, 1055
MnlI	CCTC	8 cut(s)	64, 218, 374, 728, 731, 754, 1009, 1079
MseI	TTAA	4 cut(s)	77, 99, 303, 366
MslI	CAYNNNNRTG	1 cut(s)	597
MspA1I	CMGCKG	2 cut(s)	442, 779
MspI	CCGG	2 cut(s)	125, 246
MunI	CAATTG	1 cut(s)	729
MvnI	CGCG	1 cut(s)	416
MwoI	GCNNNNNNNGC	3 cut(s)	14, 60, 94
NdeII	GATC	5 cut(s)	328, 349, 436, 763, 1050
NlaIII	CATG	2 cut(s)	625, 635
NlaIV	GGNNCC	3 cut(s)	270, 330, 1052
NmeAIII	GCCGAG	1 cut(s)	784
PciSI	GCTCTTC	1 cut(s)	791
PfeI	GAWTC	5 cut(s)	146, 252, 425, 480, 814
PflMI	CCANNNNNTGG	1 cut(s)	704
PkrI	GCNGC	5 cut(s)	10, 200, 376, 418, 778
Psp124BI	GAGCTC	1 cut(s)	786
PspN4I	GGNNCC	3 cut(s)	270, 330, 1052
PstI	CTGCAG	1 cut(s)	808
PsuI	RGATCY	2 cut(s)	328, 1050
PvuII	CAGCTG	1 cut(s)	442
RsaI	GTAC	6 cut(s)	24, 461, 562, 696, 940, 991
RsaNI	GTAC	6 cut(s)	23, 460, 561, 695, 939, 990
RseI	CAYNNNNRTG	1 cut(s)	597
SacI	GAGCTC	1 cut(s)	786
SapI	GCTCTTC	1 cut(s)	791
SaqAI	TTAA	4 cut(s)	77, 99, 303, 366
SatI	GCNGC	5 cut(s)	9, 199, 375, 417, 777
Sau3AI	GATC	5 cut(s)	328, 349, 436, 763, 1050
SduI	GDGCHC	2 cut(s)	673, 786
SfaNI	GCATC	1 cut(s)	750
SfcI	CTRYAG	2 cut(s)	804, 1058
SmiMI	CAYNNNNRTG	1 cut(s)	597
Sse9I	AATT	6 cut(s)	202, 300, 587, 641, 653, 729
SsiI	CCGC	3 cut(s)	416, 779, 1086
SspMI	CTAG	1 cut(s)	338
SstI	GAGCTC	1 cut(s)	786
StyI	CCWWGG	1 cut(s)	229
TaaI	ACNGT	4 cut(s)	27, 432, 450, 966
TaiI	ACGT	2 cut(s)	117, 864
TaqI	TCGA	2 cut(s)	557, 597
TasI	AATT	6 cut(s)	202, 300, 587, 641, 653, 729
TauI	GCSGC	1 cut(s)	419
TfiI	GAWTC	5 cut(s)	146, 252, 425, 480, 814
Tru1I	TTAA	4 cut(s)	77, 99, 303, 366
Tru9I	TTAA	4 cut(s)	77, 99, 303, 366
TscAI	CASTG	2 cut(s)	135, 435
TseI	GCWGC	4 cut(s)	8, 198, 374, 776
TspDTI	ATGAA	3 cut(s)	107, 496, 610
TspGWI	ACGGA	1 cut(s)	1007
TspRI	CASTG	2 cut(s)	135, 435
Van91I	CCANNNNNTGG	1 cut(s)	704
XcmI	CCANNNNNNNNNTGG	1 cut(s)	728
XmiI	GTMKAC	1 cut(s)	864
XspI	CTAG	1 cut(s)	338
ZraI	GACGTC	1 cut(s)	862

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.