Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0001158

Physical Location & Seq

Genomic Coordinates Reverse (-)

27611686 .. 27613680

Gene Structure 1995 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g38112.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1086 bp

ATGGACGCAGCAAGAGCAATATTACTGTGTGTTCTTTGTTATATTTTGATGTGCAATGAAGGTTTAGCCATGAAGCCAATGAAGCTTAAGCTACCGGCGAACGTAAGTGTTCCGGCAGTGATTATGTTCGGAGATTCAATAGTAGATACGGGCAACAACAACAACAACATGAAGACATTTGCTCGCTGCAATTTCCTCCCCTATGGCAAAGACTTCGAAGGTGGACTTCCAACCGGACGATTCTCAAATGGAAAAGTTCCGGCTGATCTTTTAGTTGAAGCATTTGGAATCAAGGAGCTGTTGCCGCCCTATATGGATGGATCCCTAGAGCCTAATGATCTCCTTACCGGTGTTAACTTAGCTGCAGGAGGTGTAGGTTATGACCCCTTGACATCAAAAATCGCAGCAGTTGAATCGCTGTCCGATCAGCTGGAACAGTTCAAAGAGTACATAGAAAAGCTGAAAGGAATTGTTGGAGAAAAGAGAACAAACTTCATAATATCAAATAGTATGATCTTTGTGGTAATAGGAAGCAATGACATTTCCAATACCTATTTTCTTCTCGGTGCGAGGAAATTGCAATTTGATCTTCCTTCTTACATCGACTTCATTCTCAACCATGCTTCCGAATTCTTCAAGGAATTGTATCGACTTGGGGCACGAAGAATAGCCGTTTTGGGTGTACCAGCTATTGGGTGTGTGCCATCCCAAAGAACAATAGGAGGAGGCGTCGGAAGAGATTGCGACGAGAAGCAAAACCAAGCAGCGGAGCTCTTCAACTCCAAACTATCTGCAGAGATGAATCACCTTAGACATACACTTCCCGACTCTAAGTTCACCTACATGGACGTCTACAACCCACTACAAGATATCATCAAAAACCCTAACAAATACGGGTTTGAAGTTGTAGACAAAGGGTGTTGTGGCACTGGTTTGCTGGAAGTAACAAAACTGTGCAACCAGTATCACCAAACATGTACGGACAGCTCCAAGTATGTGTTCTGGGATAGTTACCATCCAACTGAAAGAGCATACATGATCGTTGTGCAGCACCTTCTAACCAAATATGCAAGCAGCTTCTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lipase_GDSL

Protein Analysis

362

Amino Acids

40.05

Weight (kDa)

6.11

Isoelectric Point (pI)

27.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lipase_GDSL	PF00657	40 - 351	2.8e-34	GDSL-like Lipase/Acylhydrolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001158)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G58520 AT1G58525 AT1G58725 AT1G59030 AT1G59406 AT1G75880 AT1G75880 AT1G75890 AT1G75890 AT1G75890 AT1G75900 AT3G14820 AT3G43550 AT3G43570 AT5G42170
fragaria_vesca	FvH4_2g38112 FvH4_2g38120
malus_domestica	MD08G1009700.v1.1 MD08G1009800.v1.1 MD15G1008800.v1.1 MD15G1008900.v1.1 MD15G1009000.v1.1 MD15G1009100.v1.1 MD15G1009500.v1.1 MD15G1009600.v1.1
prunus_persica	Prupe.1G361800_v2.0.a1 Prupe.1G361800_v2.0.a1 Prupe.1G361900_v2.0.a1 Prupe.1G361900_v2.0.a1 Prupe.1G361900_v2.0.a1 Prupe.1G361900_v2.0.a1 Prupe.1G362000_v2.0.a1 Prupe.1G362100_v2.0.a1
pyrus_communis	pycom08g00820 pycom08g00830 pycom15g00730 pycom15g00740 pycom15g00750 pycom15g00760 pycom15g00770
rosa_chinensis	RchiOBHm_Chr6g0303381 RchiOBHm_Chr6g0303411
rosa_laevigata	RLG00000011087 RLG00000011088
rosa_multiflora	Rmu_sc0002586.1_g000041 Rmu_ssc0000114.1_g000055 Rmu_ssc0000114.1_g000059
rosa_roxburghii	Rroxscaffold_7G00164790 Rroxscaffold_7G00164830
rosa_rugosa	Rorug06G0321000
rosa_samantha	Rh6AG435300 Rh6AG435400 Rh6CG447300 Rh6CG447500 Rh6DG434100 Rh6DG434200
rosa_wichuraiana	Rw6G037690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	852
AccB7I	CCANNNNNTGG	1 cut(s)	692
AccI	GTMKAC	2 cut(s)	852, 909
AciI	CCGC	2 cut(s)	305, 767
AclWI	GGATC	2 cut(s)	315, 328
AcsI	RAATTY	1 cut(s)	629
AcyI	GRCGYC	2 cut(s)	729, 849
AfaI	GTAC	3 cut(s)	449, 684, 979
AfiI	CCNNNNNNNGG	2 cut(s)	692, 766
AflII	CTTAAG	1 cut(s)	86
AflIII	ACRYGT	1 cut(s)	974
AgeI	ACCGGT	1 cut(s)	347
AgsI	TTSAA	7 cut(s)	138, 278, 413, 442, 637, 778, 902
AjuI	GAANNNNNNNTTGG	2 cut(s)	983, 1015
Alw21I	GWGCWC	1 cut(s)	774
AlwI	GGATC	2 cut(s)	315, 328
ApeKI	GCWGC	7 cut(s)	8, 186, 362, 404, 764, 1048, 1074
ApoI	RAATTY	1 cut(s)	629
AsiGI	ACCGGT	1 cut(s)	347
AsuHPI	GGTGA	3 cut(s)	797, 829, 959
AsuII	TTCGAA	1 cut(s)	216
BaeGI	GKGCMC	1 cut(s)	661
BamHI	GGATCC	1 cut(s)	320
BanII	GRGCYC	1 cut(s)	774
BbsI	GAAGAC	1 cut(s)	179
Bbv12I	GWGCWC	1 cut(s)	774
BbvI	GCAGC	6 cut(s)	20, 173, 349, 416, 776, 1060
BccI	CCATC	3 cut(s)	311, 712, 1023
BceAI	ACGGC	1 cut(s)	656
BcgI	CGANNNNNNTGC	6 cut(s)	196, 230, 396, 430, 559, 593
BfaI	CTAG	1 cut(s)	326
BfmI	CTRYAG	2 cut(s)	363, 792
BfrI	CTTAAG	1 cut(s)	86
BisI	GCNGC	8 cut(s)	9, 187, 305, 363, 405, 765, 1049, 1075
BlsI	GCNGC	8 cut(s)	10, 188, 306, 364, 406, 766, 1050, 1076
BmiI	GGNNCC	1 cut(s)	322
BpiI	GAAGAC	1 cut(s)	179
Bpu14I	TTCGAA	1 cut(s)	216
BsaHI	GRCGYC	2 cut(s)	729, 849
BsaWI	WCCGGW	2 cut(s)	233, 347
BsaXI	ACNNNNNCTCC	2 cut(s)	714, 744
Bsc4I	CCNNNNNNNGG	2 cut(s)	692, 766
Bse118I	RCCGGY	2 cut(s)	94, 347
Bse1I	ACTGG	2 cut(s)	934, 961
Bse3DI	GCAATG	2 cut(s)	61, 541
BseGI	GGATG	3 cut(s)	322, 704, 1015
BseLI	CCNNNNNNNGG	2 cut(s)	692, 766
BseMI	GCAATG	2 cut(s)	61, 541
BseNI	ACTGG	2 cut(s)	934, 961
BseRI	GAGGAG	1 cut(s)	738
BseSI	GKGCMC	1 cut(s)	661
BseXI	GCAGC	6 cut(s)	20, 173, 349, 416, 776, 1060
BsgI	GTGCAG	1 cut(s)	1067
BshTI	ACCGGT	1 cut(s)	347
BsiHKAI	GWGCWC	1 cut(s)	774
BsiSI	CCGG	5 cut(s)	95, 113, 234, 260, 348
BslI	CCNNNNNNNGG	2 cut(s)	692, 766
Bsp119I	TTCGAA	1 cut(s)	216
Bsp1286I	GDGCHC	2 cut(s)	661, 774
Bsp143I	GATC	7 cut(s)	265, 320, 337, 424, 513, 586, 1038
BspACI	CCGC	2 cut(s)	305, 767
BspLI	GGNNCC	1 cut(s)	322
BspMAI	CTGCAG	2 cut(s)	367, 796
BspPI	GGATC	2 cut(s)	315, 328
BspQI	GCTCTTC	1 cut(s)	779
BspT104I	TTCGAA	1 cut(s)	216
BspTI	CTTAAG	1 cut(s)	86
BsrDI	GCAATG	2 cut(s)	61, 541
BsrFI	RCCGGY	2 cut(s)	94, 347
BsrI	ACTGG	2 cut(s)	934, 961
BssAI	RCCGGY	2 cut(s)	94, 347
BssMI	GATC	7 cut(s)	265, 320, 337, 424, 513, 586, 1038
BssNI	GRCGYC	2 cut(s)	729, 849
Bst4CI	ACNGT	3 cut(s)	27, 438, 954
Bst6I	CTCTTC	2 cut(s)	730, 779
BstACI	GRCGYC	2 cut(s)	729, 849
BstAFI	CTTAAG	1 cut(s)	86
BstBI	TTCGAA	1 cut(s)	216
BstC8I	GCNNGC	2 cut(s)	184, 1072
BstDEI	CTNAG	3 cut(s)	358, 809, 831
BstF5I	GGATG	3 cut(s)	322, 704, 1015
BstKTI	GATC	7 cut(s)	268, 323, 340, 427, 516, 589, 1041
BstMBI	GATC	7 cut(s)	265, 320, 337, 424, 513, 586, 1038
BstMWI	GCNNNNNNNGC	3 cut(s)	14, 82, 304
BstNSI	RCATGY	1 cut(s)	978
BstSFI	CTRYAG	2 cut(s)	363, 792
BstSLI	GKGCMC	1 cut(s)	661
BstV1I	GCAGC	6 cut(s)	20, 173, 349, 416, 776, 1060
BstV2I	GAAGAC	1 cut(s)	179
BstX2I	RGATCY	1 cut(s)	320
BstYI	RGATCY	1 cut(s)	320
BtsCI	GGATG	3 cut(s)	322, 704, 1015
BtsI	GCAGTG	1 cut(s)	123
BtsIMutI	CAGTG	2 cut(s)	123, 927
Cac8I	GCNNGC	2 cut(s)	184, 1072
Cfr10I	RCCGGY	2 cut(s)	94, 347
CseI	GACGC	2 cut(s)	14, 718
Csp6I	GTAC	3 cut(s)	448, 683, 978
CspAI	ACCGGT	1 cut(s)	347
CviAII	CATG	6 cut(s)	70, 169, 620, 844, 975, 1036
CviQI	GTAC	3 cut(s)	448, 683, 978
DdeI	CTNAG	3 cut(s)	358, 809, 831
DpnI	GATC	7 cut(s)	267, 322, 339, 426, 515, 588, 1040
DpnII	GATC	7 cut(s)	265, 320, 337, 424, 513, 586, 1038
Eam1104I	CTCTTC	2 cut(s)	730, 779
EarI	CTCTTC	2 cut(s)	730, 779
Ecl136II	GAGCTC	1 cut(s)	772
Eco24I	GRGCYC	1 cut(s)	774
Eco32I	GATATC	1 cut(s)	871
Eco53kI	GAGCTC	1 cut(s)	772
EcoICRI	GAGCTC	1 cut(s)	772
EcoRI	GAATTC	1 cut(s)	629
EcoRV	GATATC	1 cut(s)	871
EcoT38I	GRGCYC	1 cut(s)	774
FaeI	CATG	6 cut(s)	73, 172, 623, 847, 978, 1039
FalI	AAGNNNNNCTT	2 cut(s)	210, 242
FatI	CATG	6 cut(s)	69, 168, 619, 843, 974, 1035
FblI	GTMKAC	2 cut(s)	852, 909
Fnu4HI	GCNGC	8 cut(s)	9, 187, 305, 363, 405, 765, 1049, 1075
FokI	GGATG	3 cut(s)	329, 691, 1002
FriOI	GRGCYC	1 cut(s)	774
Fsp4HI	GCNGC	8 cut(s)	9, 187, 305, 363, 405, 765, 1049, 1075
FspBI	CTAG	1 cut(s)	326
GluI	GCNGC	8 cut(s)	9, 187, 305, 363, 405, 765, 1049, 1075
HapII	CCGG	5 cut(s)	95, 113, 234, 260, 348
HgaI	GACGC	2 cut(s)	14, 718
Hin1I	GRCGYC	2 cut(s)	729, 849
Hin1II	CATG	6 cut(s)	73, 172, 623, 847, 978, 1039
HincII	GTYRAC	1 cut(s)	355
HindII	GTYRAC	1 cut(s)	355
HindIII	AAGCTT	1 cut(s)	83
HinfI	GANTC	6 cut(s)	134, 240, 288, 413, 802, 827
HpaI	GTTAAC	1 cut(s)	355
HpaII	CCGG	5 cut(s)	95, 113, 234, 260, 348
HphI	GGTGA	3 cut(s)	797, 829, 959
Hpy166II	GTNNAC	6 cut(s)	224, 355, 683, 837, 853, 910
Hpy188I	TCNGA	4 cut(s)	131, 424, 628, 734
Hpy188III	TCNNGA	1 cut(s)	824
Hpy8I	GTNNAC	6 cut(s)	224, 355, 683, 837, 853, 910
Hpy99I	CGWCG	2 cut(s)	734, 749
HpyAV	CCTTC	4 cut(s)	53, 212, 603, 1064
HpyCH4III	ACNGT	3 cut(s)	27, 438, 954
HpyCH4IV	ACGT	2 cut(s)	102, 849
HpyCH4V	TGCA	8 cut(s)	54, 189, 365, 580, 794, 957, 1048, 1070
HpyF10VI	GCNNNNNNNGC	3 cut(s)	14, 82, 304
HpyF3I	CTNAG	3 cut(s)	358, 809, 831
HpySE526I	ACGT	2 cut(s)	102, 849
Hsp92I	GRCGYC	2 cut(s)	729, 849
Hsp92II	CATG	6 cut(s)	73, 172, 623, 847, 978, 1039
KspAI	GTTAAC	1 cut(s)	355
Kzo9I	GATC	7 cut(s)	265, 320, 337, 424, 513, 586, 1038
LguI	GCTCTTC	1 cut(s)	779
LmnI	GCTCC	3 cut(s)	295, 769, 992
Lsp1109I	GCAGC	6 cut(s)	20, 173, 349, 416, 776, 1060
MaeI	CTAG	1 cut(s)	326
MaeII	ACGT	2 cut(s)	102, 849
MaeIII	GTNAC	2 cut(s)	943, 1010
MalI	GATC	7 cut(s)	267, 322, 339, 426, 515, 588, 1040
MboI	GATC	7 cut(s)	265, 320, 337, 424, 513, 586, 1038
MboII	GAAGA	7 cut(s)	184, 551, 581, 625, 675, 747, 766
MflI	RGATCY	1 cut(s)	320
MhlI	GDGCHC	2 cut(s)	661, 774
MluCI	AATT	6 cut(s)	190, 468, 575, 581, 629, 641
MlyI	GAGTC	1 cut(s)	821
MmeI	TCCRAC	4 cut(s)	254, 454, 712, 1043
MnlI	CCTC	5 cut(s)	206, 362, 564, 716, 719
MseI	TTAA	2 cut(s)	87, 354
MslI	CAYNNNNRTG	1 cut(s)	842
MspA1I	CMGCKG	2 cut(s)	430, 767
MspCI	CTTAAG	1 cut(s)	86
MspI	CCGG	5 cut(s)	95, 113, 234, 260, 348
MwoI	GCNNNNNNNGC	3 cut(s)	14, 82, 304
NdeII	GATC	7 cut(s)	265, 320, 337, 424, 513, 586, 1038
NlaIII	CATG	6 cut(s)	73, 172, 623, 847, 978, 1039
NlaIV	GGNNCC	1 cut(s)	322
NspI	RCATGY	1 cut(s)	978
NspV	TTCGAA	1 cut(s)	216
PciI	ACATGT	1 cut(s)	974
PciSI	GCTCTTC	1 cut(s)	779
PfeI	GAWTC	5 cut(s)	134, 240, 288, 413, 802
PflMI	CCANNNNNTGG	1 cut(s)	692
PinAI	ACCGGT	1 cut(s)	347
PkrI	GCNGC	8 cut(s)	10, 188, 306, 364, 406, 766, 1050, 1076
PleI	GAGTC	1 cut(s)	821
PpsI	GAGTC	1 cut(s)	821
PscI	ACATGT	1 cut(s)	974
Psp124BI	GAGCTC	1 cut(s)	774
PspN4I	GGNNCC	1 cut(s)	322
PstI	CTGCAG	2 cut(s)	367, 796
PsuI	RGATCY	1 cut(s)	320
PvuII	CAGCTG	1 cut(s)	430
RsaI	GTAC	3 cut(s)	449, 684, 979
RsaNI	GTAC	3 cut(s)	448, 683, 978
RseI	CAYNNNNRTG	1 cut(s)	842
SacI	GAGCTC	1 cut(s)	774
SapI	GCTCTTC	1 cut(s)	779
SaqAI	TTAA	2 cut(s)	87, 354
SatI	GCNGC	8 cut(s)	9, 187, 305, 363, 405, 765, 1049, 1075
Sau3AI	GATC	7 cut(s)	265, 320, 337, 424, 513, 586, 1038
SchI	GAGTC	1 cut(s)	821
SduI	GDGCHC	2 cut(s)	661, 774
SfcI	CTRYAG	2 cut(s)	363, 792
SfuI	TTCGAA	1 cut(s)	216
SmiMI	CAYNNNNRTG	1 cut(s)	842
SmlI	CTYRAG	1 cut(s)	86
SmoI	CTYRAG	1 cut(s)	86
Sse9I	AATT	6 cut(s)	190, 468, 575, 581, 629, 641
SsiI	CCGC	2 cut(s)	305, 767
SspI	AATATT	1 cut(s)	21
SspMI	CTAG	1 cut(s)	326
SstI	GAGCTC	1 cut(s)	774
TaaI	ACNGT	3 cut(s)	27, 438, 954
TaiI	ACGT	2 cut(s)	105, 852
TaqI	TCGA	3 cut(s)	216, 603, 649
TasI	AATT	6 cut(s)	190, 468, 575, 581, 629, 641
TatI	WGTACW	1 cut(s)	447
TauI	GCSGC	1 cut(s)	307
TfiI	GAWTC	5 cut(s)	134, 240, 288, 413, 802
Tru1I	TTAA	2 cut(s)	87, 354
Tru9I	TTAA	2 cut(s)	87, 354
TscAI	CASTG	2 cut(s)	123, 934
TseI	GCWGC	7 cut(s)	8, 186, 362, 404, 764, 1048, 1074
TspDTI	ATGAA	7 cut(s)	72, 86, 95, 185, 484, 598, 815
TspGWI	ACGGA	1 cut(s)	995
TspRI	CASTG	2 cut(s)	123, 934
Van91I	CCANNNNNTGG	1 cut(s)	692
Vha464I	CTTAAG	1 cut(s)	86
XapI	RAATTY	1 cut(s)	629
XceI	RCATGY	1 cut(s)	978
XmiI	GTMKAC	2 cut(s)	852, 909
XspI	CTAG	1 cut(s)	326
ZraI	GACGTC	1 cut(s)	850

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.