Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0001158

Physical Location & Seq

Genomic Coordinates Forward (+)

513996 .. 517295

Gene Structure 3300 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1009600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1089 bp

ATGACCACATTATTATTGAGATTTTTTCTGTTTGTTTGTTGTGGTCTGGTGATTTTGGGAAACCAAGCGGTTGGAGGTGATGTCGTTAAGCTGCCACCCAATGCAACGATTCCCGCTGTGTTTATGTTTGGCGATTCCATCGTCGATACAGGGAACAATAACGTCAACCTGAAGACGCCAGCTCGGTGTAATTTCCCTCCCTACGGCAGGGAGTTCGAAGGAGGAATATCTACTGGGAGATATTCCAATGGAAAGGTTCCCTCTGACCTCATAGTGGAAAAGTTAGGTATTAAAGAGCTCCTGCCAGCCTATTTGGATCCAAACCTACAGCCCAATGATCTGCTTACAGGTGTCAGCTTTGCCGTTGGTGCCACCGGATATGATCCTATGACAGCCCAAATTGTGGCAGTTACACCATTGTTCGATCAACTGCGGCAATTTGAAGAGTACATAGGAAAGCTCAAAGGAATTGTGGGAGAAGAGAGAGCAAACTTCATCCTAGCCAACAGTCTATGTTTTGTGGTTGCAAGTAGCAACGATATTGCTAATACCTACTTTGTTGCCGGCGTTAGGAAGTTAGAGTATGATGTTCCTTCTTACACTGACCTCATGCTCAATCAAGCTTCCGATTTCTTTAAGGGATTGTATGCATTGGGGGCACGAAGAATTGGTGTTTTCAGTGCACCACCTATTGGGTGTCTGCCATCTCAGAGGACTTTAGGAGGAGGCGTGGAAAGAGATTGTGCAGACAAACCAAACCAAGCAGCCATGCTCTTTAACTCTAAGCTCTCTGCTGAGCTGGACGACCTCAAGAATAACCTACCTAACTCGATGCTGATTTACGTCGACATCTACAACCCACTTTTGGATATGATCATCAACCCTACTAATTACGGGTTTGAAGTTTCGAACAAAGGGTGTTGCGGGAGTGGGAAGCTGGAGGTGTCCATTCTGTGCAATCGATTCGAGCCAGAGACGTGTACGGATGACTCTCATTATCTATTTTGGGACAGCTACCACCCGACTGAGGGCGCCTACAAAATCATCGTCGACGAACTCATAACAAAATATCTCCCCCACTTGGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lipase_GDSL

Protein Analysis

363

Amino Acids

39.65

Weight (kDa)

4.83

Isoelectric Point (pI)

22.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lipase_GDSL	PF00657	40 - 353	1.5e-31	GDSL-like Lipase/Acylhydrolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001158)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G58520 AT1G58525 AT1G58725 AT1G59030 AT1G59406 AT1G75880 AT1G75880 AT1G75890 AT1G75890 AT1G75890 AT1G75900 AT3G14820 AT3G43550 AT3G43570 AT5G42170
fragaria_vesca	FvH4_2g38112 FvH4_2g38120
malus_domestica	MD08G1009700.v1.1 MD08G1009800.v1.1 MD15G1008800.v1.1 MD15G1008900.v1.1 MD15G1009000.v1.1 MD15G1009100.v1.1 MD15G1009500.v1.1 MD15G1009600.v1.1
prunus_persica	Prupe.1G361800_v2.0.a1 Prupe.1G361800_v2.0.a1 Prupe.1G361900_v2.0.a1 Prupe.1G361900_v2.0.a1 Prupe.1G361900_v2.0.a1 Prupe.1G361900_v2.0.a1 Prupe.1G362000_v2.0.a1 Prupe.1G362100_v2.0.a1
pyrus_communis	pycom08g00820 pycom08g00830 pycom15g00730 pycom15g00740 pycom15g00750 pycom15g00760 pycom15g00770
rosa_chinensis	RchiOBHm_Chr6g0303381 RchiOBHm_Chr6g0303411
rosa_laevigata	RLG00000011087 RLG00000011088
rosa_multiflora	Rmu_sc0002586.1_g000041 Rmu_ssc0000114.1_g000055 Rmu_ssc0000114.1_g000059
rosa_roxburghii	Rroxscaffold_7G00164790 Rroxscaffold_7G00164830
rosa_rugosa	Rorug06G0321000
rosa_samantha	Rh6AG435300 Rh6AG435400 Rh6CG447300 Rh6CG447500 Rh6DG434100 Rh6DG434200
rosa_wichuraiana	Rw6G037690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	368, 1031
AccB7I	CCANNNNNTGG	2 cut(s)	403, 692
AccI	GTMKAC	2 cut(s)	846, 1050
AciI	CCGC	4 cut(s)	68, 114, 433, 924
AclWI	GGATC	3 cut(s)	311, 324, 377
AcuI	CTGAAG	1 cut(s)	191
AcyI	GRCGYC	2 cut(s)	176, 1032
AdeI	CACNNNGTG	1 cut(s)	1084
AfaI	GTAC	2 cut(s)	449, 982
AflIII	ACRYGT	1 cut(s)	977
AgsI	TTSAA	2 cut(s)	443, 902
AjiI	CACGTC	1 cut(s)	978
Alw21I	GWGCWC	2 cut(s)	300, 685
Alw26I	GTCTC	1 cut(s)	968
Alw44I	GTGCAC	1 cut(s)	681
AlwI	GGATC	3 cut(s)	311, 324, 377
ApaLI	GTGCAC	1 cut(s)	681
ApeKI	GCWGC	2 cut(s)	91, 764
ArsI	GACNNNNNNTTYG	2 cut(s)	1032, 1064
AspLEI	GCGC	1 cut(s)	1034
AsuHPI	GGTGA	2 cut(s)	61, 89
AsuII	TTCGAA	2 cut(s)	216, 908
BaeGI	GKGCMC	2 cut(s)	661, 685
BamHI	GGATCC	1 cut(s)	316
BanI	GGYRCC	2 cut(s)	368, 1031
BanII	GRGCYC	1 cut(s)	300
BbsI	GAAGAC	1 cut(s)	179
Bbv12I	GWGCWC	2 cut(s)	300, 685
BbvI	GCAGC	2 cut(s)	78, 776
BccI	CCATC	2 cut(s)	146, 712
BceAI	ACGGC	2 cut(s)	220, 347
BcgI	CGANNNNNNTGC	4 cut(s)	196, 230, 946, 980
BclI	TGATCA	1 cut(s)	873
BcoDI	GTCTC	1 cut(s)	968
BfaI	CTAG	1 cut(s)	500
BfmI	CTRYAG	1 cut(s)	326
BfoI	RGCGCY	1 cut(s)	1035
BisI	GCNGC	3 cut(s)	92, 434, 765
BlpI	GCTNAGC	1 cut(s)	795
BlsI	GCNGC	3 cut(s)	93, 435, 766
BmgBI	CACGTC	1 cut(s)	978
BmiI	GGNNCC	4 cut(s)	258, 318, 370, 1033
BmrI	ACTGGG	1 cut(s)	243
BmsI	GCATC	1 cut(s)	822
BmuI	ACTGGG	1 cut(s)	243
BpiI	GAAGAC	1 cut(s)	179
BpmI	CTGGAG	1 cut(s)	959
Bpu1102I	GCTNAGC	1 cut(s)	795
Bpu14I	TTCGAA	2 cut(s)	216, 908
BpuEI	CTTGAG	1 cut(s)	794
Bsa29I	ATCGAT	1 cut(s)	961
BsaHI	GRCGYC	2 cut(s)	176, 1032
BsaWI	WCCGGW	1 cut(s)	374
BsaXI	ACNNNNNCTCC	4 cut(s)	66, 96, 714, 744
Bse118I	RCCGGY	1 cut(s)	563
Bse1I	ACTGG	1 cut(s)	238
BseCI	ATCGAT	1 cut(s)	961
BseGI	GGATG	2 cut(s)	495, 991
BseMII	CTCAG	3 cut(s)	722, 786, 1017
BseNI	ACTGG	1 cut(s)	238
BseRI	GAGGAG	1 cut(s)	738
BseSI	GKGCMC	2 cut(s)	661, 685
BseXI	GCAGC	2 cut(s)	78, 776
BsgI	GTGCAG	1 cut(s)	765
BshNI	GGYRCC	2 cut(s)	368, 1031
BshVI	ATCGAT	1 cut(s)	961
BsiHKAI	GWGCWC	2 cut(s)	300, 685
BsiSI	CCGG	2 cut(s)	375, 564
BslFI	GGGAC	1 cut(s)	1022
BsmAI	GTCTC	1 cut(s)	968
BsmBI	CGTCTC	1 cut(s)	968
BsmFI	GGGAC	1 cut(s)	1022
Bsp119I	TTCGAA	2 cut(s)	216, 908
Bsp1286I	GDGCHC	3 cut(s)	300, 661, 685
Bsp143I	GATC	5 cut(s)	316, 337, 382, 424, 873
Bsp1720I	GCTNAGC	1 cut(s)	795
BspACI	CCGC	4 cut(s)	68, 114, 433, 924
BspCNI	CTCAG	3 cut(s)	721, 787, 1018
BspDI	ATCGAT	1 cut(s)	961
BspLI	GGNNCC	4 cut(s)	258, 318, 370, 1033
BspPI	GGATC	3 cut(s)	311, 324, 377
BspT104I	TTCGAA	2 cut(s)	216, 908
BspT107I	GGYRCC	2 cut(s)	368, 1031
BsrFI	RCCGGY	1 cut(s)	563
BsrI	ACTGG	1 cut(s)	238
BssAI	RCCGGY	1 cut(s)	563
BssMI	GATC	5 cut(s)	316, 337, 382, 424, 873
BssNI	GRCGYC	2 cut(s)	176, 1032
Bst4CI	ACNGT	1 cut(s)	509
Bst6I	CTCTTC	2 cut(s)	438, 474
BstACI	GRCGYC	2 cut(s)	176, 1032
BstBI	TTCGAA	2 cut(s)	216, 908
BstC8I	GCNNGC	3 cut(s)	180, 306, 565
BstDEI	CTNAG	4 cut(s)	708, 783, 795, 1026
BstENI	CCTNNNNNAGG	1 cut(s)	205
BstF5I	GGATG	2 cut(s)	495, 991
BstH2I	RGCGCY	1 cut(s)	1035
BstHHI	GCGC	1 cut(s)	1034
BstKTI	GATC	5 cut(s)	319, 340, 385, 427, 876
BstMAI	GTCTC	1 cut(s)	968
BstMBI	GATC	5 cut(s)	316, 337, 382, 424, 873
BstMWI	GCNNNNNNNGC	2 cut(s)	368, 656
BstSFI	CTRYAG	1 cut(s)	326
BstSLI	GKGCMC	2 cut(s)	661, 685
BstV1I	GCAGC	2 cut(s)	78, 776
BstV2I	GAAGAC	1 cut(s)	179
BstX2I	RGATCY	1 cut(s)	316
BstXI	CCANNNNNNTGG	1 cut(s)	71
BstYI	RGATCY	1 cut(s)	316
Bsu15I	ATCGAT	1 cut(s)	961
BsuTUI	ATCGAT	1 cut(s)	961
BtrI	CACGTC	1 cut(s)	978
BtsCI	GGATG	2 cut(s)	495, 991
BtsIMutI	CAGTG	2 cut(s)	600, 685
Cac8I	GCNNGC	3 cut(s)	180, 306, 565
CfoI	GCGC	1 cut(s)	1034
Cfr10I	RCCGGY	1 cut(s)	563
ClaI	ATCGAT	1 cut(s)	961
CseI	GACGC	1 cut(s)	184
Csp6I	GTAC	2 cut(s)	448, 981
CviAII	CATG	2 cut(s)	610, 769
CviQI	GTAC	2 cut(s)	448, 981
DdeI	CTNAG	4 cut(s)	708, 783, 795, 1026
DinI	GGCGCC	1 cut(s)	1033
DpnI	GATC	5 cut(s)	318, 339, 384, 426, 875
DpnII	GATC	5 cut(s)	316, 337, 382, 424, 873
DraIII	CACNNNGTG	1 cut(s)	1084
Eam1104I	CTCTTC	2 cut(s)	438, 474
EarI	CTCTTC	2 cut(s)	438, 474
Ecl136II	GAGCTC	1 cut(s)	298
Eco24I	GRGCYC	1 cut(s)	300
Eco53kI	GAGCTC	1 cut(s)	298
Eco57I	CTGAAG	1 cut(s)	191
EcoICRI	GAGCTC	1 cut(s)	298
EcoNI	CCTNNNNNAGG	1 cut(s)	205
EcoT22I	ATGCAT	1 cut(s)	652
EcoT38I	GRGCYC	1 cut(s)	300
EgeI	GGCGCC	1 cut(s)	1033
EheI	GGCGCC	1 cut(s)	1033
Esp3I	CGTCTC	1 cut(s)	968
FaeI	CATG	2 cut(s)	613, 772
FaqI	GGGAC	1 cut(s)	1022
FatI	CATG	2 cut(s)	609, 768
FauI	CCCGC	2 cut(s)	121, 917
FbaI	TGATCA	1 cut(s)	873
FblI	GTMKAC	2 cut(s)	846, 1050
Fnu4HI	GCNGC	3 cut(s)	92, 434, 765
FokI	GGATG	2 cut(s)	482, 998
FriOI	GRGCYC	1 cut(s)	300
Fsp4HI	GCNGC	3 cut(s)	92, 434, 765
FspBI	CTAG	1 cut(s)	500
GlaI	GCGC	1 cut(s)	1033
GluI	GCNGC	3 cut(s)	92, 434, 765
GsuI	CTGGAG	1 cut(s)	959
HaeII	RGCGCY	1 cut(s)	1035
HapII	CCGG	2 cut(s)	375, 564
HgaI	GACGC	1 cut(s)	184
HhaI	GCGC	1 cut(s)	1034
Hin1I	GRCGYC	2 cut(s)	176, 1032
Hin1II	CATG	2 cut(s)	613, 772
Hin6I	GCGC	1 cut(s)	1032
HinP1I	GCGC	1 cut(s)	1032
HincII	GTYRAC	3 cut(s)	166, 847, 1051
HindII	GTYRAC	3 cut(s)	166, 847, 1051
HindIII	AAGCTT	1 cut(s)	621
HinfI	GANTC	4 cut(s)	109, 134, 963, 989
HpaII	CCGG	2 cut(s)	375, 564
HphI	GGTGA	2 cut(s)	61, 89
Hpy166II	GTNNAC	5 cut(s)	166, 683, 847, 981, 1051
Hpy188I	TCNGA	3 cut(s)	265, 628, 711
Hpy188III	TCNNGA	1 cut(s)	811
Hpy8I	GTNNAC	5 cut(s)	166, 683, 847, 981, 1051
Hpy99I	CGWCG	4 cut(s)	146, 848, 1052, 1055
HpyAV	CCTTC	2 cut(s)	212, 603
HpyCH4III	ACNGT	1 cut(s)	509
HpyCH4IV	ACGT	3 cut(s)	162, 843, 977
HpyCH4V	TGCA	6 cut(s)	104, 527, 650, 683, 746, 957
HpyF10VI	GCNNNNNNNGC	2 cut(s)	368, 656
HpyF3I	CTNAG	4 cut(s)	708, 783, 795, 1026
HpySE526I	ACGT	3 cut(s)	162, 843, 977
Hsp92I	GRCGYC	2 cut(s)	176, 1032
Hsp92II	CATG	2 cut(s)	613, 772
HspAI	GCGC	1 cut(s)	1032
KasI	GGCGCC	1 cut(s)	1031
KroI	GCCGGC	1 cut(s)	563
KroNI	GCCGGC	1 cut(s)	565
Ksp22I	TGATCA	1 cut(s)	873
Kzo9I	GATC	5 cut(s)	316, 337, 382, 424, 873
LmnI	GCTCC	1 cut(s)	303
Lsp1109I	GCAGC	2 cut(s)	78, 776
LweI	GCATC	1 cut(s)	822
MaeI	CTAG	1 cut(s)	500
MaeII	ACGT	3 cut(s)	162, 843, 977
MaeIII	GTNAC	1 cut(s)	409
MalI	GATC	5 cut(s)	318, 339, 384, 426, 875
MboI	GATC	5 cut(s)	316, 337, 382, 424, 873
MboII	GAAGA	4 cut(s)	184, 455, 491, 675
MflI	RGATCY	1 cut(s)	316
MhlI	GDGCHC	3 cut(s)	300, 661, 685
MluCI	AATT	6 cut(s)	190, 399, 437, 468, 666, 889
Mly113I	GGCGCC	1 cut(s)	1032
MlyI	GAGTC	1 cut(s)	983
MmeI	TCCRAC	1 cut(s)	52
Mph1103I	ATGCAT	1 cut(s)	652
MroNI	GCCGGC	1 cut(s)	563
MseI	TTAA	4 cut(s)	87, 291, 636, 777
MspA1I	CMGCKG	1 cut(s)	116
MspI	CCGG	2 cut(s)	375, 564
MwoI	GCNNNNNNNGC	2 cut(s)	368, 656
NaeI	GCCGGC	1 cut(s)	565
NarI	GGCGCC	1 cut(s)	1032
NdeII	GATC	5 cut(s)	316, 337, 382, 424, 873
NgoMIV	GCCGGC	1 cut(s)	563
NlaIII	CATG	2 cut(s)	613, 772
NlaIV	GGNNCC	4 cut(s)	258, 318, 370, 1033
NsiI	ATGCAT	1 cut(s)	652
NspV	TTCGAA	2 cut(s)	216, 908
PdiI	GCCGGC	1 cut(s)	565
PfeI	GAWTC	3 cut(s)	109, 134, 963
PflMI	CCANNNNNTGG	2 cut(s)	403, 692
PkrI	GCNGC	3 cut(s)	93, 435, 766
PleI	GAGTC	1 cut(s)	983
PluTI	GGCGCC	1 cut(s)	1035
PpsI	GAGTC	1 cut(s)	983
Psp124BI	GAGCTC	1 cut(s)	300
PspN4I	GGNNCC	4 cut(s)	258, 318, 370, 1033
PsuI	RGATCY	1 cut(s)	316
RsaI	GTAC	2 cut(s)	449, 982
RsaNI	GTAC	2 cut(s)	448, 981
SacI	GAGCTC	1 cut(s)	300
SalI	GTCGAC	2 cut(s)	845, 1049
SaqAI	TTAA	4 cut(s)	87, 291, 636, 777
SatI	GCNGC	3 cut(s)	92, 434, 765
Sau3AI	GATC	5 cut(s)	316, 337, 382, 424, 873
SchI	GAGTC	1 cut(s)	983
SduI	GDGCHC	3 cut(s)	300, 661, 685
SfaNI	GCATC	1 cut(s)	822
SfcI	CTRYAG	1 cut(s)	326
SfoI	GGCGCC	1 cut(s)	1033
SfuI	TTCGAA	2 cut(s)	216, 908
SgrDI	CGTCGACG	1 cut(s)	1049
SmlI	CTYRAG	1 cut(s)	809
SmoI	CTYRAG	1 cut(s)	809
Sse9I	AATT	6 cut(s)	190, 399, 437, 468, 666, 889
SsiI	CCGC	4 cut(s)	68, 114, 433, 924
SspDI	GGCGCC	1 cut(s)	1031
SspMI	CTAG	1 cut(s)	500
SstI	GAGCTC	1 cut(s)	300
TaaI	ACNGT	1 cut(s)	509
TaiI	ACGT	3 cut(s)	165, 846, 980
TaqI	TCGA	9 cut(s)	144, 216, 423, 830, 846, 908, 961, 966, 1050
TasI	AATT	6 cut(s)	190, 399, 437, 468, 666, 889
TatI	WGTACW	1 cut(s)	447
TauI	GCSGC	1 cut(s)	436
TfiI	GAWTC	3 cut(s)	109, 134, 963
Tru1I	TTAA	4 cut(s)	87, 291, 636, 777
Tru9I	TTAA	4 cut(s)	87, 291, 636, 777
TscAI	CASTG	2 cut(s)	607, 685
TseI	GCWGC	2 cut(s)	91, 764
TspDTI	ATGAA	1 cut(s)	484
TspGWI	ACGGA	1 cut(s)	998
TspRI	CASTG	2 cut(s)	607, 685
Van91I	CCANNNNNTGG	2 cut(s)	403, 692
VneI	GTGCAC	1 cut(s)	681
XagI	CCTNNNNNAGG	1 cut(s)	205
XmiI	GTMKAC	2 cut(s)	846, 1050
XspI	CTAG	1 cut(s)	500
Zsp2I	ATGCAT	1 cut(s)	652

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.