Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0001158

Physical Location & Seq

Genomic Coordinates Reverse (-)

33302434 .. 33305804

Gene Structure 3371 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G361900.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1170 bp

ATGCATGCAGATACAGGAGGACTAGCTATGTGCAGTCCTCAGTGGGTCAGGCAGAGACAGTGCTCATCAAACACGATATGCATATTTATTTCTTATGTTAATATATTTTTCGTGCTTTTCTTGTGTAATATTATTAATATTACAGAGGCAGCAGCTGCGAGAATCACGCTGCCAGGGAATGCAAGTGTTTCAGCAGTGATTATATTTGGAGATTCCATTGTTGATACGGGCAACAACAACAACAATTTCAAAACACTTGCACGCAGCAATTTCCCTCCCTATGGGAAAGACCTCAAGGGAGGGATGCCAACAGGAAGATATTCCAATGGAAAGGTTCCCTCAGACCTCATAGTGGAAGCATTAGGAATCAAAGAGCTGTTGCCCGCATATTTGGATCCAACCCTGCAGCCTAAGGATCTCCTTACTGGCGTAGTCATAGCTGCTGGTGGCGCAGGTTATGACCCCTTGACAGCACAGGTCGCGGGAGTTGCATCACTATCCGACCAATTGAAACAGTTCAAGGAGTACATAAAAAAGCTAAAAGCAATTGCTGGGGAAGAGAGAGCAAACTTTATCATATCAAATAGTTTGATTTTTGTGGTAGCTGGCACCAACGATATTTCAAATACCTATTTTCTAACCGGTTTGAGAAAATTGGAGTATGATGTTCCTTCTTACACTGACTTAATGCTCAACTACGCTTCTGTATTCGTCAAGGACTTGTATGGATTGGGGGTACGAAGAATCGGTGTACTCAACACACCACCTATTGGATGTGTACCCTCTCAACGAACGGTTGCAGGAGGCGTGCTAAGAGAATGCGACGAGAAACAAAACCAAGCATCGCAGCTCTTCAATTCCAAACTCTCTGCAGAGGTGGATGACCTTAACAAAAACCTGCCCAATTCCAGGGTGGTCTATATTGACATCTATAATCCACTGCTTGATCTCATCAACAACCCCTCTAAATACGGCTTTGAAGTTGTGAACAAAGGGTGTTGTGGTACTGGGATTATTGAAGTAACAAAACTGTGCAACCAGATTCAGCCTGCAGGCACCTGTTCAGATGACTCTAAGTACGTTTTCTGGGACAGCTACCATCCAACAGAGAGAGCCTACAAGATCATTGTGCAGCACATTCTAGACAAATATATCAACTTCTTCTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lipase_GDSL

Protein Analysis

390

Amino Acids

42.65

Weight (kDa)

6.81

Isoelectric Point (pI)

30.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001158)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G58520 AT1G58525 AT1G58725 AT1G59030 AT1G59406 AT1G75880 AT1G75880 AT1G75890 AT1G75890 AT1G75890 AT1G75900 AT3G14820 AT3G43550 AT3G43570 AT5G42170
fragaria_vesca	FvH4_2g38112 FvH4_2g38120
malus_domestica	MD08G1009700.v1.1 MD08G1009800.v1.1 MD15G1008800.v1.1 MD15G1008900.v1.1 MD15G1009000.v1.1 MD15G1009100.v1.1 MD15G1009500.v1.1 MD15G1009600.v1.1
prunus_persica	Prupe.1G361800_v2.0.a1 Prupe.1G361800_v2.0.a1 Prupe.1G361900_v2.0.a1 Prupe.1G361900_v2.0.a1 Prupe.1G361900_v2.0.a1 Prupe.1G361900_v2.0.a1 Prupe.1G362000_v2.0.a1 Prupe.1G362100_v2.0.a1
pyrus_communis	pycom08g00820 pycom08g00830 pycom15g00730 pycom15g00740 pycom15g00750 pycom15g00760 pycom15g00770
rosa_chinensis	RchiOBHm_Chr6g0303381 RchiOBHm_Chr6g0303411
rosa_laevigata	RLG00000011087 RLG00000011088
rosa_multiflora	Rmu_sc0002586.1_g000041 Rmu_ssc0000114.1_g000055 Rmu_ssc0000114.1_g000059
rosa_roxburghii	Rroxscaffold_7G00164790 Rroxscaffold_7G00164830
rosa_rugosa	Rorug06G0321000
rosa_samantha	Rh6AG435300 Rh6AG435400 Rh6CG447300 Rh6CG447500 Rh6DG434100 Rh6DG434200
rosa_wichuraiana	Rw6G037690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	443, 906
AccB1I	GGYRCC	2 cut(s)	608, 1055
AccB7I	CCANNNNNTGG	1 cut(s)	770
AccII	CGCG	1 cut(s)	482
AciI	CCGC	2 cut(s)	384, 482
AclWI	GGATC	3 cut(s)	389, 402, 423
AfaI	GTAC	6 cut(s)	527, 738, 753, 780, 1006, 1079
AfiI	CCNNNNNNNGG	4 cut(s)	281, 352, 770, 909
AgeI	ACCGGT	1 cut(s)	641
AgsI	TTSAA	7 cut(s)	250, 511, 520, 624, 856, 980, 1019
AjnI	CCWGG	2 cut(s)	172, 908
AluBI	AGCT	8 cut(s)	26, 155, 376, 440, 538, 605, 850, 1095
AluI	AGCT	8 cut(s)	26, 155, 376, 440, 538, 605, 850, 1095
Alw21I	GWGCWC	1 cut(s)	65
Alw26I	GTCTC	1 cut(s)	49
AlwI	GGATC	3 cut(s)	389, 402, 423
AlwNI	CAGNNNCTG	1 cut(s)	155
ApeKI	GCWGC	9 cut(s)	149, 152, 155, 169, 264, 406, 440, 847, 1132
AseI	ATTAAT	1 cut(s)	135
AsiGI	ACCGGT	1 cut(s)	641
Asp700I	GAANNNNTTC	2 cut(s)	319, 515
AspLEI	GCGC	1 cut(s)	452
AxyI	CCTNAGG	1 cut(s)	411
BamHI	GGATCC	1 cut(s)	394
BanI	GGYRCC	2 cut(s)	608, 1055
Bbv12I	GWGCWC	1 cut(s)	65
BbvI	GCAGC	9 cut(s)	142, 156, 161, 164, 276, 418, 427, 859, 1144
BccI	CCATC	1 cut(s)	1107
BceAI	ACGGC	1 cut(s)	988
BciT130I	CCWGG	2 cut(s)	174, 910
BcoDI	GTCTC	1 cut(s)	49
BfaI	CTAG	2 cut(s)	23, 1142
BfmI	CTRYAG	3 cut(s)	404, 870, 1050
BfuAI	ACCTGC	2 cut(s)	443, 906
BisI	GCNGC	9 cut(s)	150, 153, 156, 170, 265, 407, 441, 848, 1133
BlsI	GCNGC	9 cut(s)	151, 154, 157, 171, 266, 408, 442, 849, 1134
Bme1390I	CCNGG	2 cut(s)	174, 910
BmiI	GGNNCC	4 cut(s)	336, 396, 610, 1057
BmrFI	CCNGG	2 cut(s)	174, 910
BmrI	ACTGGG	1 cut(s)	1017
BmsI	GCATC	3 cut(s)	294, 500, 851
BmuI	ACTGGG	1 cut(s)	1017
BpuEI	CTTGAG	1 cut(s)	278
BsaJI	CCNNGG	2 cut(s)	173, 909
BsaWI	WCCGGW	1 cut(s)	641
Bsc4I	CCNNNNNNNGG	4 cut(s)	281, 352, 770, 909
Bse118I	RCCGGY	1 cut(s)	641
Bse1I	ACTGG	2 cut(s)	430, 1012
Bse21I	CCTNAGG	1 cut(s)	411
BseBI	CCWGG	2 cut(s)	174, 910
BseDI	CCNNGG	2 cut(s)	173, 909
BseGI	GGATG	4 cut(s)	309, 779, 886, 1099
BseLI	CCNNNNNNNGG	4 cut(s)	281, 352, 770, 909
BseMII	CTCAG	2 cut(s)	53, 354
BseNI	ACTGG	2 cut(s)	430, 1012
BseXI	GCAGC	9 cut(s)	142, 156, 161, 164, 276, 418, 427, 859, 1144
BseYI	CCCAGC	1 cut(s)	551
BsgI	GTGCAG	2 cut(s)	52, 1151
Bsh1236I	CGCG	1 cut(s)	482
BshNI	GGYRCC	2 cut(s)	608, 1055
BshTI	ACCGGT	1 cut(s)	641
BsiHKAI	GWGCWC	1 cut(s)	65
BsiSI	CCGG	1 cut(s)	642
BslFI	GGGAC	1 cut(s)	1103
BslI	CCNNNNNNNGG	4 cut(s)	281, 352, 770, 909
BsmAI	GTCTC	1 cut(s)	49
BsmFI	GGGAC	1 cut(s)	1103
BsmI	GAATGC	2 cut(s)	184, 824
Bsp1286I	GDGCHC	1 cut(s)	65
Bsp143I	GATC	4 cut(s)	394, 415, 946, 1122
BspACI	CCGC	2 cut(s)	384, 482
BspCNI	CTCAG	2 cut(s)	52, 353
BspFNI	CGCG	1 cut(s)	482
BspLI	GGNNCC	4 cut(s)	336, 396, 610, 1057
BspMAI	CTGCAG	3 cut(s)	408, 874, 1054
BspMI	ACCTGC	2 cut(s)	443, 906
BspPI	GGATC	3 cut(s)	389, 402, 423
BspQI	GCTCTTC	1 cut(s)	857
BspT107I	GGYRCC	2 cut(s)	608, 1055
BsrFI	RCCGGY	1 cut(s)	641
BsrI	ACTGG	2 cut(s)	430, 1012
BssAI	RCCGGY	1 cut(s)	641
BssECI	CCNNGG	2 cut(s)	173, 909
BssMI	GATC	4 cut(s)	394, 415, 946, 1122
Bst2UI	CCWGG	2 cut(s)	174, 910
Bst4CI	ACNGT	4 cut(s)	60, 516, 796, 1032
Bst6I	CTCTTC	2 cut(s)	552, 857
BstAPI	GCANNNNNTGC	1 cut(s)	155
BstC8I	GCNNGC	7 cut(s)	6, 262, 384, 607, 809, 1050, 1054
BstDEI	CTNAG	5 cut(s)	39, 340, 411, 812, 1074
BstF5I	GGATG	4 cut(s)	309, 779, 886, 1099
BstFNI	CGCG	1 cut(s)	482
BstHHI	GCGC	1 cut(s)	452
BstKTI	GATC	4 cut(s)	397, 418, 949, 1125
BstMAI	GTCTC	1 cut(s)	49
BstMBI	GATC	4 cut(s)	394, 415, 946, 1122
BstMWI	GCNNNNNNNGC	4 cut(s)	155, 449, 479, 488
BstNI	CCWGG	2 cut(s)	174, 910
BstNSI	RCATGY	1 cut(s)	8
BstSCI	CCNGG	2 cut(s)	172, 908
BstSFI	CTRYAG	3 cut(s)	404, 870, 1050
BstUI	CGCG	1 cut(s)	482
BstV1I	GCAGC	9 cut(s)	142, 156, 161, 164, 276, 418, 427, 859, 1144
BstX2I	RGATCY	2 cut(s)	394, 415
BstYI	RGATCY	2 cut(s)	394, 415
Bsu36I	CCTNAGG	1 cut(s)	411
BtgZI	GCGATG	1 cut(s)	828
BtsCI	GGATG	4 cut(s)	309, 779, 886, 1099
BtsI	GCAGTG	2 cut(s)	201, 938
BtsIMutI	CAGTG	5 cut(s)	47, 65, 201, 678, 938
BveI	ACCTGC	2 cut(s)	443, 906
Cac8I	GCNNGC	7 cut(s)	6, 262, 384, 607, 809, 1050, 1054
CaiI	CAGNNNCTG	1 cut(s)	155
CfoI	GCGC	1 cut(s)	452
Cfr10I	RCCGGY	1 cut(s)	641
Csp6I	GTAC	6 cut(s)	526, 737, 752, 779, 1005, 1078
CspAI	ACCGGT	1 cut(s)	641
CviAII	CATG	1 cut(s)	5
CviQI	GTAC	6 cut(s)	526, 737, 752, 779, 1005, 1078
DdeI	CTNAG	5 cut(s)	39, 340, 411, 812, 1074
DpnI	GATC	4 cut(s)	396, 417, 948, 1124
DpnII	GATC	4 cut(s)	394, 415, 946, 1122
Eam1104I	CTCTTC	2 cut(s)	552, 857
EarI	CTCTTC	2 cut(s)	552, 857
Eco81I	CCTNAGG	1 cut(s)	411
EcoRII	CCWGG	2 cut(s)	172, 908
EcoT22I	ATGCAT	2 cut(s)	6, 83
FaeI	CATG	1 cut(s)	8
FaqI	GGGAC	1 cut(s)	1103
FatI	CATG	1 cut(s)	4
FauI	CCCGC	2 cut(s)	391, 475
Fnu4HI	GCNGC	9 cut(s)	150, 153, 156, 170, 265, 407, 441, 848, 1133
FokI	GGATG	4 cut(s)	316, 786, 893, 1086
Fsp4HI	GCNGC	9 cut(s)	150, 153, 156, 170, 265, 407, 441, 848, 1133
FspBI	CTAG	2 cut(s)	23, 1142
GlaI	GCGC	1 cut(s)	451
GluI	GCNGC	9 cut(s)	150, 153, 156, 170, 265, 407, 441, 848, 1133
GsaI	CCCAGC	1 cut(s)	555
HapII	CCGG	1 cut(s)	642
HhaI	GCGC	1 cut(s)	452
Hin1II	CATG	1 cut(s)	8
Hin6I	GCGC	1 cut(s)	450
HinP1I	GCGC	1 cut(s)	450
HinfI	GANTC	6 cut(s)	162, 212, 366, 744, 1042, 1070
HpaII	CCGG	1 cut(s)	642
Hpy166II	GTNNAC	3 cut(s)	752, 779, 988
Hpy188I	TCNGA	4 cut(s)	343, 502, 1066, 1169
Hpy188III	TCNNGA	1 cut(s)	1142
Hpy8I	GTNNAC	3 cut(s)	752, 779, 988
Hpy99I	CGWCG	1 cut(s)	827
HpyAV	CCTTC	1 cut(s)	681
HpyCH4III	ACNGT	4 cut(s)	60, 516, 796, 1032
HpyCH4IV	ACGT	1 cut(s)	1080
HpyF10VI	GCNNNNNNNGC	4 cut(s)	155, 449, 479, 488
HpyF3I	CTNAG	5 cut(s)	39, 340, 411, 812, 1074
HpySE526I	ACGT	1 cut(s)	1080
Hsp92II	CATG	1 cut(s)	8
HspAI	GCGC	1 cut(s)	450
Kzo9I	GATC	4 cut(s)	394, 415, 946, 1122
LguI	GCTCTTC	1 cut(s)	857
Lsp1109I	GCAGC	9 cut(s)	142, 156, 161, 164, 276, 418, 427, 859, 1144
LweI	GCATC	3 cut(s)	294, 500, 851
MaeI	CTAG	2 cut(s)	23, 1142
MaeII	ACGT	1 cut(s)	1080
MaeIII	GTNAC	1 cut(s)	1021
MalI	GATC	4 cut(s)	396, 417, 948, 1124
MboI	GATC	4 cut(s)	394, 415, 946, 1122
MboII	GAAGA	6 cut(s)	327, 569, 753, 844, 1153, 1156
MfeI	CAATTG	2 cut(s)	506, 546
MflI	RGATCY	2 cut(s)	394, 415
MhlI	GDGCHC	1 cut(s)	65
MluCI	AATT	7 cut(s)	244, 268, 506, 546, 653, 856, 904
MlyI	GAGTC	1 cut(s)	1064
MmeI	TCCRAC	3 cut(s)	422, 525, 1127
Mph1103I	ATGCAT	2 cut(s)	6, 83
MroXI	GAANNNNTTC	2 cut(s)	319, 515
MseI	TTAA	4 cut(s)	99, 135, 686, 888
MspA1I	CMGCKG	1 cut(s)	155
MspI	CCGG	1 cut(s)	642
MspR9I	CCNGG	2 cut(s)	174, 910
MunI	CAATTG	2 cut(s)	506, 546
Mva1269I	GAATGC	2 cut(s)	184, 824
MvaI	CCWGG	2 cut(s)	174, 910
MvnI	CGCG	1 cut(s)	482
MwoI	GCNNNNNNNGC	4 cut(s)	155, 449, 479, 488
NdeII	GATC	4 cut(s)	394, 415, 946, 1122
NlaIII	CATG	1 cut(s)	8
NlaIV	GGNNCC	4 cut(s)	336, 396, 610, 1057
NsiI	ATGCAT	2 cut(s)	6, 83
NspI	RCATGY	1 cut(s)	8
PaeI	GCATGC	1 cut(s)	8
PciSI	GCTCTTC	1 cut(s)	857
PctI	GAATGC	2 cut(s)	184, 824
PdmI	GAANNNNTTC	2 cut(s)	319, 515
PfeI	GAWTC	5 cut(s)	162, 212, 366, 744, 1042
PflMI	CCANNNNNTGG	1 cut(s)	770
PinAI	ACCGGT	1 cut(s)	641
PkrI	GCNGC	9 cut(s)	151, 154, 157, 171, 266, 408, 442, 849, 1134
PleI	GAGTC	1 cut(s)	1064
PpsI	GAGTC	1 cut(s)	1064
PshBI	ATTAAT	1 cut(s)	135
Psp6I	CCWGG	2 cut(s)	172, 908
PspFI	CCCAGC	1 cut(s)	551
PspGI	CCWGG	2 cut(s)	172, 908
PspN4I	GGNNCC	4 cut(s)	336, 396, 610, 1057
PstI	CTGCAG	3 cut(s)	408, 874, 1054
PstNI	CAGNNNCTG	1 cut(s)	155
PsuI	RGATCY	2 cut(s)	394, 415
PvuII	CAGCTG	1 cut(s)	155
RsaI	GTAC	6 cut(s)	527, 738, 753, 780, 1006, 1079
RsaNI	GTAC	6 cut(s)	526, 737, 752, 779, 1005, 1078
SapI	GCTCTTC	1 cut(s)	857
SaqAI	TTAA	4 cut(s)	99, 135, 686, 888
SatI	GCNGC	9 cut(s)	150, 153, 156, 170, 265, 407, 441, 848, 1133
Sau3AI	GATC	4 cut(s)	394, 415, 946, 1122
SbfI	CCTGCAGG	1 cut(s)	1054
SchI	GAGTC	1 cut(s)	1064
ScrFI	CCNGG	2 cut(s)	174, 910
SdaI	CCTGCAGG	1 cut(s)	1054
SduI	GDGCHC	1 cut(s)	65
SfaNI	GCATC	3 cut(s)	294, 500, 851
SfcI	CTRYAG	3 cut(s)	404, 870, 1050
SmlI	CTYRAG	1 cut(s)	293
SmoI	CTYRAG	1 cut(s)	293
SphI	GCATGC	1 cut(s)	8
Sse8387I	CCTGCAGG	1 cut(s)	1054
Sse9I	AATT	7 cut(s)	244, 268, 506, 546, 653, 856, 904
SsiI	CCGC	2 cut(s)	384, 482
SspI	AATATT	2 cut(s)	130, 139
SspMI	CTAG	2 cut(s)	23, 1142
StyD4I	CCNGG	2 cut(s)	172, 908
TaaI	ACNGT	4 cut(s)	60, 516, 796, 1032
TaiI	ACGT	1 cut(s)	1083
TasI	AATT	7 cut(s)	244, 268, 506, 546, 653, 856, 904
TatI	WGTACW	2 cut(s)	525, 751
TfiI	GAWTC	5 cut(s)	162, 212, 366, 744, 1042
Tru1I	TTAA	4 cut(s)	99, 135, 686, 888
Tru9I	TTAA	4 cut(s)	99, 135, 686, 888
TscAI	CASTG	5 cut(s)	47, 65, 201, 685, 945
TseI	GCWGC	9 cut(s)	149, 152, 155, 169, 264, 406, 440, 847, 1132
TspRI	CASTG	5 cut(s)	47, 65, 201, 685, 945
Van91I	CCANNNNNTGG	1 cut(s)	770
VspI	ATTAAT	1 cut(s)	135
XbaI	TCTAGA	1 cut(s)	1141
XceI	RCATGY	1 cut(s)	8
XcmI	CCANNNNNNNNNTGG	1 cut(s)	910
XmnI	GAANNNNTTC	2 cut(s)	319, 515
XspI	CTAG	2 cut(s)	23, 1142
Zsp2I	ATGCAT	2 cut(s)	6, 83

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.