Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0001158

Physical Location & Seq

Genomic Coordinates Reverse (-)

472855 .. 474805

Gene Structure 1951 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1008800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1140 bp

ATGCATGCAGATGCAGGAGGACTAGGTCTGTTTATTCCTAAACTGATCAGGCTGCAGATGCAGTCGTCATATGTAATTTTCGTGATTTTCTTCTGCAATATTATTAGTATGAGTAACGTTACTGAGGCAGCCGCAACAGTCAAGCTACCGGAGAATGTGACTATCCCGGCTGTTATTGTATTCGGAGATTCAATTGTTGATACCGGCAACAACAACAAAAACTTCGTGACATTTGCACGCTGCAATTTCTTACCCTATGGAAAAGACCTCAAGGGAGGAATGCCAACCGGCAGATATTCCAATGGAAAGGTTCCCTCAGACTTCATAGTGGAAGCATTCGGAATCAAGGAGCTGTTGCCGGCATATTTGGATCCAACCCTGCAGCCTAATGACCTCCTTACCGGTGTTGTCATGGCTAACGGTGCTGTAGGTTATGATCCATTGACAGCAAAACTCGGGGTAGTTGCATCGCTATCCGACCAAATAAAACAGTTCAAGGAGTACATAGAAAAGCTGAAAGGAATTGTTGGAGAGGAGAAAACAAACTTCATTATAAAAAACAGTCTAATTTTTGTGGTAGCCGGCAGCAACGATATTTCTTATACCTATTTTCTTACCGGTGCTAGGAGATTGGAGTATGACGTTCCTTCTTACACCGACTTCATGCTCAAACATGCCTCTGATTTCGTCAAGGACTTGTATGGATTGGGGGTACGAAGAATAGGTGTACTAAGTGCACCACCTATCGGATGTGTACCATCACAACGAACGGTAAATGGAGGCATAGAAAGAGATTGTGATGAAAGACAAAACCAAGCATGCCAGCTGTTCAATTCCAAGCTCAATGTGGAGATGGATCGCCTTAACAAAAACCTACCAAACTCGAGAGTGGTCTACATTGACATCTATAATCCGCTACTCGATATCATAAAAAATCCCGCTAAATACGGGTTTGAAGTTGCGAATAAAGGGTGTTGTGGTACTGGCCTTATTGAAGTAACAAAACTGTGCAATCAGCTCCAACATGTCTGCACAGATGACTCTAACTATGTTTTTTGGGACAGCTACCATCCAACCGAAACAGCGTACAAGATCATTGTGAAGCAGATGCTCAACAATTATTCCAGCCGCTTCTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lipase_GDSL

Protein Analysis

380

Amino Acids

42.08

Weight (kDa)

6.88

Isoelectric Point (pI)

30.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lipase_GDSL	PF00657	58 - 369	4.6e-32	GDSL-like Lipase/Acylhydrolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001158)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G58520 AT1G58525 AT1G58725 AT1G59030 AT1G59406 AT1G75880 AT1G75880 AT1G75890 AT1G75890 AT1G75890 AT1G75900 AT3G14820 AT3G43550 AT3G43570 AT5G42170
fragaria_vesca	FvH4_2g38112 FvH4_2g38120
malus_domestica	MD08G1009700.v1.1 MD08G1009800.v1.1 MD15G1008800.v1.1 MD15G1008900.v1.1 MD15G1009000.v1.1 MD15G1009100.v1.1 MD15G1009500.v1.1 MD15G1009600.v1.1
prunus_persica	Prupe.1G361800_v2.0.a1 Prupe.1G361800_v2.0.a1 Prupe.1G361900_v2.0.a1 Prupe.1G361900_v2.0.a1 Prupe.1G361900_v2.0.a1 Prupe.1G361900_v2.0.a1 Prupe.1G362000_v2.0.a1 Prupe.1G362100_v2.0.a1
pyrus_communis	pycom08g00820 pycom08g00830 pycom15g00730 pycom15g00740 pycom15g00750 pycom15g00760 pycom15g00770
rosa_chinensis	RchiOBHm_Chr6g0303381 RchiOBHm_Chr6g0303411
rosa_laevigata	RLG00000011087 RLG00000011088
rosa_multiflora	Rmu_sc0002586.1_g000041 Rmu_ssc0000114.1_g000055 Rmu_ssc0000114.1_g000059
rosa_roxburghii	Rroxscaffold_7G00164790 Rroxscaffold_7G00164830
rosa_rugosa	Rorug06G0321000
rosa_samantha	Rh6AG435300 Rh6AG435400 Rh6CG447300 Rh6CG447500 Rh6DG434100 Rh6DG434200
rosa_wichuraiana	Rw6G037690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	554
AccI	GTMKAC	1 cut(s)	894
AciI	CCGC	4 cut(s)	132, 914, 939, 1129
AclI	AACGTT	1 cut(s)	117
AclWI	GGATC	4 cut(s)	365, 378, 431, 864
AfaI	GTAC	6 cut(s)	503, 714, 729, 756, 982, 1088
AfiI	CCNNNNNNNGG	2 cut(s)	624, 746
AflIII	ACRYGT	1 cut(s)	1024
AgeI	ACCGGT	2 cut(s)	401, 617
AgsI	TTSAA	5 cut(s)	192, 496, 832, 956, 995
AluBI	AGCT	7 cut(s)	145, 352, 514, 826, 841, 1018, 1065
AluI	AGCT	7 cut(s)	145, 352, 514, 826, 841, 1018, 1065
Alw21I	GWGCWC	1 cut(s)	739
Alw44I	GTGCAC	1 cut(s)	735
AlwI	GGATC	4 cut(s)	365, 378, 431, 864
Ama87I	CYCGRG	2 cut(s)	455, 883
AoxI	GGCC	1 cut(s)	985
ApaLI	GTGCAC	1 cut(s)	735
ApeKI	GCWGC	5 cut(s)	52, 128, 240, 382, 585
AsiGI	ACCGGT	2 cut(s)	401, 617
AsuC2I	CCSGG	1 cut(s)	167
AvaI	CYCGRG	2 cut(s)	455, 883
BaeGI	GKGCMC	1 cut(s)	739
BamHI	GGATCC	1 cut(s)	370
Bbv12I	GWGCWC	1 cut(s)	739
BbvI	GCAGC	5 cut(s)	39, 140, 227, 394, 597
BccI	CCATC	3 cut(s)	766, 847, 1077
BclI	TGATCA	1 cut(s)	45
BcnI	CCSGG	1 cut(s)	167
BfaI	CTAG	2 cut(s)	23, 624
BfmI	CTRYAG	3 cut(s)	53, 380, 426
BisI	GCNGC	7 cut(s)	53, 129, 132, 241, 383, 586, 1129
BlsI	GCNGC	7 cut(s)	54, 130, 133, 242, 384, 587, 1130
Bme1390I	CCNGG	1 cut(s)	167
BmeT110I	CYCGRG	2 cut(s)	455, 883
BmiI	GGNNCC	2 cut(s)	312, 372
BmrFI	CCNGG	1 cut(s)	167
BmsI	GCATC	3 cut(s)	48, 476, 1098
BpuEI	CTTGAG	1 cut(s)	254
BpuMI	CCSGG	1 cut(s)	167
BsaWI	WCCGGW	3 cut(s)	148, 401, 617
Bsc4I	CCNNNNNNNGG	2 cut(s)	624, 746
Bse118I	RCCGGY	6 cut(s)	203, 287, 358, 401, 581, 617
Bse1I	ACTGG	1 cut(s)	988
BseGI	GGATG	2 cut(s)	755, 1069
BseLI	CCNNNNNNNGG	2 cut(s)	624, 746
BseMII	CTCAG	2 cut(s)	114, 330
BseNI	ACTGG	1 cut(s)	988
BseRI	GAGGAG	1 cut(s)	548
BseSI	GKGCMC	1 cut(s)	739
BseXI	GCAGC	5 cut(s)	39, 140, 227, 394, 597
BsgI	GTGCAG	1 cut(s)	1015
BshFI	GGCC	1 cut(s)	987
BshTI	ACCGGT	2 cut(s)	401, 617
BsiHKAI	GWGCWC	1 cut(s)	739
BsiHKCI	CYCGRG	2 cut(s)	455, 883
BsiSI	CCGG	8 cut(s)	149, 167, 204, 288, 359, 402, 582, 618
BslFI	GGGAC	1 cut(s)	1073
BslI	CCNNNNNNNGG	2 cut(s)	624, 746
BsmFI	GGGAC	1 cut(s)	1073
BsmI	GAATGC	2 cut(s)	285, 335
BsnI	GGCC	1 cut(s)	987
BsoBI	CYCGRG	2 cut(s)	455, 883
Bsp1286I	GDGCHC	1 cut(s)	739
Bsp143I	GATC	5 cut(s)	45, 370, 436, 856, 1092
BspACI	CCGC	4 cut(s)	132, 914, 939, 1129
BspANI	GGCC	1 cut(s)	987
BspCNI	CTCAG	2 cut(s)	115, 329
BspLI	GGNNCC	2 cut(s)	312, 372
BspMAI	CTGCAG	2 cut(s)	57, 384
BspPI	GGATC	4 cut(s)	365, 378, 431, 864
BsrFI	RCCGGY	6 cut(s)	203, 287, 358, 401, 581, 617
BsrI	ACTGG	1 cut(s)	988
BssAI	RCCGGY	6 cut(s)	203, 287, 358, 401, 581, 617
BssMI	GATC	5 cut(s)	45, 370, 436, 856, 1092
Bst4CI	ACNGT	6 cut(s)	139, 422, 492, 563, 772, 1008
BstC8I	GCNNGC	6 cut(s)	6, 238, 360, 583, 820, 824
BstDEI	CTNAG	3 cut(s)	123, 316, 731
BstF5I	GGATG	2 cut(s)	755, 1069
BstKTI	GATC	5 cut(s)	48, 373, 439, 859, 1095
BstMBI	GATC	5 cut(s)	45, 370, 436, 856, 1092
BstMWI	GCNNNNNNNGC	2 cut(s)	58, 422
BstNSI	RCATGY	4 cut(s)	8, 677, 822, 1028
BstSCI	CCNGG	1 cut(s)	165
BstSFI	CTRYAG	3 cut(s)	53, 380, 426
BstSLI	GKGCMC	1 cut(s)	739
BstV1I	GCAGC	5 cut(s)	39, 140, 227, 394, 597
BstX2I	RGATCY	1 cut(s)	370
BstYI	RGATCY	1 cut(s)	370
BsuRI	GGCC	1 cut(s)	987
BtgZI	GCGATG	1 cut(s)	453
BtsCI	GGATG	2 cut(s)	755, 1069
Cac8I	GCNNGC	6 cut(s)	6, 238, 360, 583, 820, 824
Cfr10I	RCCGGY	6 cut(s)	203, 287, 358, 401, 581, 617
Csp6I	GTAC	6 cut(s)	502, 713, 728, 755, 981, 1087
CspAI	ACCGGT	2 cut(s)	401, 617
CviAII	CATG	6 cut(s)	5, 412, 664, 674, 819, 1025
CviQI	GTAC	6 cut(s)	502, 713, 728, 755, 981, 1087
DdeI	CTNAG	3 cut(s)	123, 316, 731
DpnI	GATC	5 cut(s)	47, 372, 438, 858, 1094
DpnII	GATC	5 cut(s)	45, 370, 436, 856, 1092
Eco32I	GATATC	1 cut(s)	925
Eco88I	CYCGRG	2 cut(s)	455, 883
EcoRV	GATATC	1 cut(s)	925
EcoT22I	ATGCAT	1 cut(s)	6
FaeI	CATG	6 cut(s)	8, 415, 667, 677, 822, 1028
FaqI	GGGAC	1 cut(s)	1073
FatI	CATG	6 cut(s)	4, 411, 663, 673, 818, 1024
FauI	CCCGC	1 cut(s)	946
FauNDI	CATATG	1 cut(s)	70
FbaI	TGATCA	1 cut(s)	45
FblI	GTMKAC	1 cut(s)	894
Fnu4HI	GCNGC	7 cut(s)	53, 129, 132, 241, 383, 586, 1129
FokI	GGATG	2 cut(s)	762, 1056
Fsp4HI	GCNGC	7 cut(s)	53, 129, 132, 241, 383, 586, 1129
FspBI	CTAG	2 cut(s)	23, 624
GluI	GCNGC	7 cut(s)	53, 129, 132, 241, 383, 586, 1129
HaeIII	GGCC	1 cut(s)	987
HapII	CCGG	8 cut(s)	149, 167, 204, 288, 359, 402, 582, 618
Hin1II	CATG	6 cut(s)	8, 415, 667, 677, 822, 1028
HinfI	GANTC	3 cut(s)	188, 342, 1040
HpaII	CCGG	8 cut(s)	149, 167, 204, 288, 359, 402, 582, 618
Hpy166II	GTNNAC	4 cut(s)	728, 737, 755, 895
Hpy188I	TCNGA	6 cut(s)	185, 319, 341, 478, 682, 749
Hpy188III	TCNNGA	3 cut(s)	82, 226, 885
Hpy8I	GTNNAC	4 cut(s)	728, 737, 755, 895
HpyAV	CCTTC	1 cut(s)	657
HpyCH4III	ACNGT	6 cut(s)	139, 422, 492, 563, 772, 1008
HpyCH4IV	ACGT	2 cut(s)	117, 642
HpyF10VI	GCNNNNNNNGC	2 cut(s)	58, 422
HpyF3I	CTNAG	3 cut(s)	123, 316, 731
HpySE526I	ACGT	2 cut(s)	117, 642
Hsp92II	CATG	6 cut(s)	8, 415, 667, 677, 822, 1028
KroI	GCCGGC	2 cut(s)	358, 581
KroNI	GCCGGC	2 cut(s)	360, 583
Ksp22I	TGATCA	1 cut(s)	45
Kzo9I	GATC	5 cut(s)	45, 370, 436, 856, 1092
LmnI	GCTCC	2 cut(s)	349, 1023
Lsp1109I	GCAGC	5 cut(s)	39, 140, 227, 394, 597
LweI	GCATC	3 cut(s)	48, 476, 1098
MaeI	CTAG	2 cut(s)	23, 624
MaeII	ACGT	2 cut(s)	117, 642
MaeIII	GTNAC	5 cut(s)	113, 118, 157, 226, 997
MalI	GATC	5 cut(s)	47, 372, 438, 858, 1094
MboI	GATC	5 cut(s)	45, 370, 436, 856, 1092
MboII	GAAGA	3 cut(s)	82, 729, 1126
MfeI	CAATTG	1 cut(s)	192
MflI	RGATCY	1 cut(s)	370
MhlI	GDGCHC	1 cut(s)	739
MluCI	AATT	7 cut(s)	75, 192, 244, 522, 567, 832, 1117
MlyI	GAGTC	1 cut(s)	1034
MmeI	TCCRAC	5 cut(s)	398, 501, 508, 1045, 1097
MnlI	CCTC	9 cut(s)	11, 118, 269, 278, 325, 404, 526, 688, 773
Mph1103I	ATGCAT	1 cut(s)	6
MroNI	GCCGGC	2 cut(s)	358, 581
MseI	TTAA	1 cut(s)	864
MslI	CAYNNNNRTG	1 cut(s)	9
MspA1I	CMGCKG	1 cut(s)	826
MspI	CCGG	8 cut(s)	149, 167, 204, 288, 359, 402, 582, 618
MspR9I	CCNGG	1 cut(s)	167
MunI	CAATTG	1 cut(s)	192
Mva1269I	GAATGC	2 cut(s)	285, 335
MwoI	GCNNNNNNNGC	2 cut(s)	58, 422
NaeI	GCCGGC	2 cut(s)	360, 583
NciI	CCSGG	1 cut(s)	167
NdeI	CATATG	1 cut(s)	70
NdeII	GATC	5 cut(s)	45, 370, 436, 856, 1092
NgoMIV	GCCGGC	2 cut(s)	358, 581
NlaIII	CATG	6 cut(s)	8, 415, 667, 677, 822, 1028
NlaIV	GGNNCC	2 cut(s)	312, 372
NmuCI	GTSAC	2 cut(s)	157, 226
NsiI	ATGCAT	1 cut(s)	6
NspI	RCATGY	4 cut(s)	8, 677, 822, 1028
PaeI	GCATGC	2 cut(s)	8, 822
PaeR7I	CTCGAG	1 cut(s)	883
PciI	ACATGT	1 cut(s)	1024
PctI	GAATGC	2 cut(s)	285, 335
PdiI	GCCGGC	2 cut(s)	360, 583
PfeI	GAWTC	2 cut(s)	188, 342
PflFI	GACNNNGTC	1 cut(s)	24
PinAI	ACCGGT	2 cut(s)	401, 617
PkrI	GCNGC	7 cut(s)	54, 130, 133, 242, 384, 587, 1130
PleI	GAGTC	1 cut(s)	1034
PpsI	GAGTC	1 cut(s)	1034
PscI	ACATGT	1 cut(s)	1024
PsiI	TTATAA	1 cut(s)	554
Psp1406I	AACGTT	1 cut(s)	117
PspN4I	GGNNCC	2 cut(s)	312, 372
PstI	CTGCAG	2 cut(s)	57, 384
PsuI	RGATCY	1 cut(s)	370
PsyI	GACNNNGTC	1 cut(s)	24
PvuII	CAGCTG	1 cut(s)	826
RsaI	GTAC	6 cut(s)	503, 714, 729, 756, 982, 1088
RsaNI	GTAC	6 cut(s)	502, 713, 728, 755, 981, 1087
RseI	CAYNNNNRTG	1 cut(s)	9
SaqAI	TTAA	1 cut(s)	864
SatI	GCNGC	7 cut(s)	53, 129, 132, 241, 383, 586, 1129
Sau3AI	GATC	5 cut(s)	45, 370, 436, 856, 1092
SchI	GAGTC	1 cut(s)	1034
ScrFI	CCNGG	1 cut(s)	167
SduI	GDGCHC	1 cut(s)	739
SfaNI	GCATC	3 cut(s)	48, 476, 1098
SfcI	CTRYAG	3 cut(s)	53, 380, 426
Sfr274I	CTCGAG	1 cut(s)	883
SlaI	CTCGAG	1 cut(s)	883
SmiMI	CAYNNNNRTG	1 cut(s)	9
SmlI	CTYRAG	2 cut(s)	269, 883
SmoI	CTYRAG	2 cut(s)	269, 883
SphI	GCATGC	2 cut(s)	8, 822
Sse9I	AATT	7 cut(s)	75, 192, 244, 522, 567, 832, 1117
SsiI	CCGC	4 cut(s)	132, 914, 939, 1129
SspI	AATATT	1 cut(s)	100
SspMI	CTAG	2 cut(s)	23, 624
StyD4I	CCNGG	1 cut(s)	165
TaaI	ACNGT	6 cut(s)	139, 422, 492, 563, 772, 1008
TaiI	ACGT	2 cut(s)	120, 645
TaqI	TCGA	2 cut(s)	884, 921
TasI	AATT	7 cut(s)	75, 192, 244, 522, 567, 832, 1117
TatI	WGTACW	2 cut(s)	501, 727
TauI	GCSGC	2 cut(s)	134, 1131
TfiI	GAWTC	2 cut(s)	188, 342
Tru1I	TTAA	1 cut(s)	864
Tru9I	TTAA	1 cut(s)	864
TseFI	GTSAC	2 cut(s)	157, 226
TseI	GCWGC	5 cut(s)	52, 128, 240, 382, 585
Tsp45I	GTSAC	2 cut(s)	157, 226
TspDTI	ATGAA	4 cut(s)	313, 538, 652, 816
Tth111I	GACNNNGTC	1 cut(s)	24
VneI	GTGCAC	1 cut(s)	735
XceI	RCATGY	4 cut(s)	8, 677, 822, 1028
XcmI	CCANNNNNNNNNTGG	1 cut(s)	844
XhoI	CTCGAG	1 cut(s)	883
XmiI	GTMKAC	1 cut(s)	894
XspI	CTAG	2 cut(s)	23, 624
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.