AT1G59406

Contains the following InterPro domains Lipase, GDSL, active site (InterPro IPR008265), Lipase, GDSL (InterPro IPR001087)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0001158
Physical Location & Seq
Reverse (-)
21844352 .. 21846019
1668 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G59406.1

Sequence Viewer

Length: 1050 bp
ATGAAGATTCAAATATTATTGTTCGCTTTGGTTTTAATCTTCGTGGAAGCTAATGCAGCGACGCAAGGAAAAAACACAACAATCCCAGCACTAATAGTTTTTGGAGATTCAATAATGGATACAGGAAATAACAATAATCTTCCCACTCTTCTAAAGTGTAACTTTCCTCCATATGGAAAAGATTATCCTGGAGGCTTCGCTACTGGAAGATTTTCTGATGGAAGAGTTCCTTCTGATCTTATTGCGGAAAAGTTGGGATTGGCTAAGACATTACCAGCATATATGAATCCGTATTTGAAGCCAGAGGATCTTCTTAAAGGTGTAACATTTGCATCTGGAGGAACTGGTTATGATCCATTGACAGCAAAAATTATGTCAGTAATATCGGTGTGGGATCAACTCATAAATTTCAAAGAATATATATCAAAGATCAAGAGGCATTTCGGAGAAGAAAAAGCCAAAGATATCTTGGAACATAGTTTCTTTCTTGTGGTGTCTAGTAGCAATGACCTTGCTCACACTTATTTAGCTCAAACTCATCGATATGATCGTACCTCTTATGCCAATTTCTTGGCTGACTCTGCTGTCCATTTCGTGAGAGAATTACATAAGCTTGGAGCTCGGAAAATAGGAGTGTTTAGTGCAGTCCCCGTCGGTTGTGTTCCACTCCAAAGAACAGTTTTTGGAGGTTTTTTTACAAGAGGATGTAATCAACCTCTAAACAACATGGCAAAACAATTTAACGCAAGACTTTCTCCAGCTTTAGATTCTTTAGATAAAGAGCTAGATGGTGTTATCCTTTACATTAATGTTTATGATACTCTTTTCGACATGATCCAACACCCTAAAAAATACGGTTTTGAGGTAGCTGATAGAGGATGTTGCGGTAAAGGATTGCTTGCGATATCCTATTTGTGTAACTCATTGAACCCATTTACGTGTTCTAATTCTTCAGCATACATATTTTGGGATAGCTATCATCCATCTGAAAGAGCTTATCAAGTTATCGTCGACAATTTACTCGACAAATATTTGAGCAAAGTCTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lipase_GDSL

Protein Analysis

349

Amino Acids

38.86

Weight (kDa)

8.33

Isoelectric Point (pI)

23.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lipase_GDSL PF00657 32 - 339 7.7e-28 GDSL-like Lipase/Acylhydrolase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 584
AccI GTMKAC 1 cut(s) 1011
AciI CCGC 2 cut(s) 245, 885
AclWI GGATC 4 cut(s) 315, 347, 402, 829
AcsI RAATTY 1 cut(s) 406
AcuI CTGAAG 1 cut(s) 936
AfaI GTAC 1 cut(s) 553
AfiI CCNNNNNNNGG 1 cut(s) 173
AflIII ACRYGT 1 cut(s) 938
AgsI TTSAA 5 cut(s) 11, 111, 298, 412, 928
AjnI CCWGG 1 cut(s) 187
AluBI AGCT 9 cut(s) 50, 530, 613, 620, 761, 784, 869, 975, 995
AluI AGCT 9 cut(s) 50, 530, 613, 620, 761, 784, 869, 975, 995
Alw21I GWGCWC 1 cut(s) 622
AlwI GGATC 4 cut(s) 315, 347, 402, 829
ApeKI GCWGC 1 cut(s) 56
ApoI RAATTY 1 cut(s) 406
ArsI GACNNNNNNTTYG 2 cut(s) 359, 391
AseI ATTAAT 1 cut(s) 807
Asp700I GAANNNNTTC 1 cut(s) 211
BanII GRGCYC 1 cut(s) 622
Bbv12I GWGCWC 1 cut(s) 622
BbvI GCAGC 1 cut(s) 68
BccI CCATC 3 cut(s) 212, 782, 991
BciT130I CCWGG 1 cut(s) 189
BciVI GTATCC 1 cut(s) 112
BfaI CTAG 2 cut(s) 498, 785
BfuI GTATCC 1 cut(s) 112
BisI GCNGC 1 cut(s) 57
BlsI GCNGC 1 cut(s) 58
Bme1390I CCNGG 1 cut(s) 189
BmrFI CCNGG 1 cut(s) 189
BmsI GCATC 1 cut(s) 341
BpmI CTGGAG 3 cut(s) 210, 357, 741
Bsa29I ATCGAT 1 cut(s) 541
BsaAI YACGTR 1 cut(s) 939
BsaBI GATNNNNATC 1 cut(s) 975
Bsc4I CCNNNNNNNGG 1 cut(s) 173
Bse1I ACTGG 2 cut(s) 208, 349
Bse3DI GCAATG 1 cut(s) 511
Bse8I GATNNNNATC 1 cut(s) 975
BseBI CCWGG 1 cut(s) 189
BseCI ATCGAT 1 cut(s) 541
BseGI GGATG 3 cut(s) 710, 884, 979
BseJI GATNNNNATC 1 cut(s) 975
BseLI CCNNNNNNNGG 1 cut(s) 173
BseMI GCAATG 1 cut(s) 511
BseNI ACTGG 2 cut(s) 208, 349
BseXI GCAGC 1 cut(s) 68
BseYI CCCAGC 1 cut(s) 85
BsgI GTGCAG 1 cut(s) 663
BshVI ATCGAT 1 cut(s) 541
BsiHKAI GWGCWC 1 cut(s) 622
BslFI GGGAC 1 cut(s) 632
BslI CCNNNNNNNGG 1 cut(s) 173
BsmFI GGGAC 1 cut(s) 632
Bsp1286I GDGCHC 1 cut(s) 622
Bsp143I GATC 7 cut(s) 235, 307, 352, 394, 429, 547, 834
BspACI CCGC 2 cut(s) 245, 885
BspDI ATCGAT 1 cut(s) 541
BspPI GGATC 4 cut(s) 315, 347, 402, 829
BsrDI GCAATG 1 cut(s) 511
BsrI ACTGG 2 cut(s) 208, 349
BssMI GATC 7 cut(s) 235, 307, 352, 394, 429, 547, 834
Bst2UI CCWGG 1 cut(s) 189
Bst4CI ACNGT 2 cut(s) 679, 857
Bst6I CTCTTC 2 cut(s) 153, 217
BstBAI YACGTR 1 cut(s) 939
BstC8I GCNNGC 1 cut(s) 900
BstDEI CTNAG 1 cut(s) 264
BstF5I GGATG 3 cut(s) 710, 884, 979
BstKTI GATC 7 cut(s) 238, 310, 355, 397, 432, 550, 837
BstMBI GATC 7 cut(s) 235, 307, 352, 394, 429, 547, 834
BstMWI GCNNNNNNNGC 2 cut(s) 56, 581
BstNI CCWGG 1 cut(s) 189
BstSCI CCNGG 1 cut(s) 187
BstV1I GCAGC 1 cut(s) 68
BstX2I RGATCY 1 cut(s) 307
BstXI CCANNNNNNTGG 1 cut(s) 571
BstYI RGATCY 1 cut(s) 307
Bsu15I ATCGAT 1 cut(s) 541
BsuI GTATCC 1 cut(s) 112
BsuTUI ATCGAT 1 cut(s) 541
BtsCI GGATG 3 cut(s) 710, 884, 979
Cac8I GCNNGC 1 cut(s) 900
ClaI ATCGAT 1 cut(s) 541
CseI GACGC 1 cut(s) 70
Csp6I GTAC 1 cut(s) 552
CviAII CATG 2 cut(s) 727, 832
CviQI GTAC 1 cut(s) 552
DdeI CTNAG 1 cut(s) 264
DpnI GATC 7 cut(s) 237, 309, 354, 396, 431, 549, 836
DpnII GATC 7 cut(s) 235, 307, 352, 394, 429, 547, 834
DrdI GACNNNNNNGTC 1 cut(s) 584
DseDI GACNNNNNNGTC 1 cut(s) 584
Eam1104I CTCTTC 2 cut(s) 153, 217
EarI CTCTTC 2 cut(s) 153, 217
Ecl136II GAGCTC 1 cut(s) 620
Eco24I GRGCYC 1 cut(s) 622
Eco32I GATATC 2 cut(s) 466, 906
Eco53kI GAGCTC 1 cut(s) 620
Eco57I CTGAAG 1 cut(s) 936
EcoICRI GAGCTC 1 cut(s) 620
EcoRII CCWGG 1 cut(s) 187
EcoRV GATATC 2 cut(s) 466, 906
EcoT38I GRGCYC 1 cut(s) 622
FaeI CATG 2 cut(s) 730, 835
FalI AAGNNNNNCTT 6 cut(s) 146, 178, 214, 246, 882, 914
FaqI GGGAC 1 cut(s) 632
FatI CATG 2 cut(s) 726, 831
FauNDI CATATG 1 cut(s) 172
FblI GTMKAC 1 cut(s) 1011
Fnu4HI GCNGC 1 cut(s) 57
FokI GGATG 3 cut(s) 717, 891, 966
FriOI GRGCYC 1 cut(s) 622
Fsp4HI GCNGC 1 cut(s) 57
FspBI CTAG 2 cut(s) 498, 785
GluI GCNGC 1 cut(s) 57
GsaI CCCAGC 1 cut(s) 89
GsuI CTGGAG 3 cut(s) 210, 357, 741
HgaI GACGC 1 cut(s) 70
Hin1II CATG 2 cut(s) 730, 835
HincII GTYRAC 1 cut(s) 1012
HindII GTYRAC 1 cut(s) 1012
HindIII AAGCTT 1 cut(s) 611
HinfI GANTC 5 cut(s) 7, 107, 286, 578, 767
Hpy166II GTNNAC 1 cut(s) 1012
Hpy188I TCNGA 5 cut(s) 217, 235, 446, 624, 988
Hpy188III TCNNGA 3 cut(s) 336, 433, 595
Hpy8I GTNNAC 1 cut(s) 1012
Hpy99I CGWCG 3 cut(s) 64, 656, 1013
HpyAV CCTTC 1 cut(s) 240
HpyCH4III ACNGT 2 cut(s) 679, 857
HpyCH4IV ACGT 1 cut(s) 938
HpyCH4V TGCA 3 cut(s) 56, 332, 644
HpyF10VI GCNNNNNNNGC 2 cut(s) 56, 581
HpyF3I CTNAG 1 cut(s) 264
HpySE526I ACGT 1 cut(s) 938
Hsp92II CATG 2 cut(s) 730, 835
Kzo9I GATC 7 cut(s) 235, 307, 352, 394, 429, 547, 834
LmnI GCTCC 1 cut(s) 617
Lsp1109I GCAGC 1 cut(s) 68
LweI GCATC 1 cut(s) 341
MaeI CTAG 2 cut(s) 498, 785
MaeII ACGT 1 cut(s) 938
MaeIII GTNAC 3 cut(s) 158, 322, 917
MalI GATC 7 cut(s) 237, 309, 354, 396, 431, 549, 836
MboI GATC 7 cut(s) 235, 307, 352, 394, 429, 547, 834
MboII GAAGA 9 cut(s) 16, 31, 131, 140, 219, 234, 302, 461, 942
MflI RGATCY 1 cut(s) 307
MhlI GDGCHC 1 cut(s) 622
MluCI AATT 7 cut(s) 369, 406, 565, 602, 737, 946, 1015
MlyI GAGTC 1 cut(s) 572
MmeI TCCRAC 1 cut(s) 862
MroXI GAANNNNTTC 1 cut(s) 211
MseI TTAA 4 cut(s) 35, 315, 741, 807
MslI CAYNNNNRTG 2 cut(s) 543, 937
MspR9I CCNGG 1 cut(s) 189
MvaI CCWGG 1 cut(s) 189
MwoI GCNNNNNNNGC 2 cut(s) 56, 581
NdeI CATATG 1 cut(s) 172
NdeII GATC 7 cut(s) 235, 307, 352, 394, 429, 547, 834
NlaIII CATG 2 cut(s) 730, 835
PcsI WCGNNNNNNNCGW 1 cut(s) 547
PdmI GAANNNNTTC 1 cut(s) 211
PfeI GAWTC 4 cut(s) 7, 107, 286, 767
PfoI TCCNGGA 1 cut(s) 187
PkrI GCNGC 1 cut(s) 58
PleI GAGTC 1 cut(s) 572
PpsI GAGTC 1 cut(s) 572
Ppu21I YACGTR 1 cut(s) 939
PshBI ATTAAT 1 cut(s) 807
Psp124BI GAGCTC 1 cut(s) 622
Psp6I CCWGG 1 cut(s) 187
PspFI CCCAGC 1 cut(s) 85
PspGI CCWGG 1 cut(s) 187
PsuI RGATCY 1 cut(s) 307
RsaI GTAC 1 cut(s) 553
RsaNI GTAC 1 cut(s) 552
RseI CAYNNNNRTG 2 cut(s) 543, 937
SacI GAGCTC 1 cut(s) 622
SalI GTCGAC 1 cut(s) 1010
SaqAI TTAA 4 cut(s) 35, 315, 741, 807
SatI GCNGC 1 cut(s) 57
Sau3AI GATC 7 cut(s) 235, 307, 352, 394, 429, 547, 834
SchI GAGTC 1 cut(s) 572
ScrFI CCNGG 1 cut(s) 189
SduI GDGCHC 1 cut(s) 622
SfaNI GCATC 1 cut(s) 341
SmiMI CAYNNNNRTG 2 cut(s) 543, 937
Sse9I AATT 7 cut(s) 369, 406, 565, 602, 737, 946, 1015
SsiI CCGC 2 cut(s) 245, 885
SspI AATATT 2 cut(s) 15, 1031
SspMI CTAG 2 cut(s) 498, 785
SstI GAGCTC 1 cut(s) 622
StyD4I CCNGG 1 cut(s) 187
TaaI ACNGT 2 cut(s) 679, 857
TaiI ACGT 1 cut(s) 941
TaqI TCGA 4 cut(s) 541, 828, 1011, 1023
TasI AATT 7 cut(s) 369, 406, 565, 602, 737, 946, 1015
TfiI GAWTC 4 cut(s) 7, 107, 286, 767
Tru1I TTAA 4 cut(s) 35, 315, 741, 807
Tru9I TTAA 4 cut(s) 35, 315, 741, 807
TseI GCWGC 1 cut(s) 56
TspDTI ATGAA 2 cut(s) 17, 299
TspGWI ACGGA 1 cut(s) 279
VspI ATTAAT 1 cut(s) 807
XapI RAATTY 1 cut(s) 406
XcmI CCANNNNNNNNNTGG 1 cut(s) 466
XmiI GTMKAC 1 cut(s) 1011
XmnI GAANNNNTTC 1 cut(s) 211
XspI CTAG 2 cut(s) 498, 785
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.