AT1G75880

Belongs to the 'GDSL' lipolytic enzyme family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0001158
Physical Location & Seq
Forward (+)
28490443 .. 28492578
2136 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G75880.1

Sequence Viewer

Length: 1128 bp
ATGGAACGATGTCGTTCTGGTCATCATCGCATCATTTCTTATTATCTCTCTTCTTCGTTGATACTATTTTGGTGTATTTTCGTTCTCGTGCTGTTATCTACGACAAGTACTACAAATGCTTTAGTGAAAATCCCGAAAAACACGACCGTTCCGGCGGTAATAGTGTTCGGTGATTCAATTGTCGATGCCGGGAATAACGACGACATGATAACAGAAGCTAGATGCGATTATGCTCCCTACGGCATTGATTTTGACGGTGGAGTTGCTACGGGAAGATTCTCTAATGGCAAAGTCCCTGGTGATATTGTAGCGGAAGAGCTAGGGATTAAACCCAATATACCGGCATATCGAAATCCGAATTTAAAACCAGAAGAGCTCTTAACCGGTGTAACATTTGCTTCTGGTGGTGCTGGTTATGTTCCTTTGACAACCAAAATAGCGGTAGGAGGAATACCTTTACCACAGCAATTGATATATTTTGAGGAATATATAGAGAAATTGAAGCAAATGGTTGGAGAAAAGAGGACAAAGTTCATAATCAAGAATAGCTTGTTCGTTGTTATATGTGGTAGTAACGATATCGCCAACGACTTCTTTACTCTCCCCCCGGTCCGGCTACACTACACCGTCGCTTCTTTCACCGCTCTTATGGCCGACAATGCTCGTTCTTTTGCTCAGACACTCTATGGATATGGAGCAAGAAGAATACTTGTATTTGGTGCACCACCAATAGGATGTGTTCCTTCGCAGAGAACCGTAGCAGGAGGACCTACAAGAGATTGTGTTGCTAGGTTTAATGATGCAGCAAAACTTTTCAATACTAAGCTCTCTGCAAATATTGATGTCTTGTCAAGGACTCTACAAGACCCAACAATAATCTATATTGACATCTATAGTCCTCTTCTTGATCTCATTTTAAACCCTCATCAATATGGATTTAAGGTGGCCAATAAAGGATGTTGCGGAACCGGATTAATAGAAGTTACTGCGCTATGCAACAACTATACAGCTTCTGTATGTCCCATAAGATCTGATTATGTGTTTTGGGACAGTTTTCATCCTACTGAAAAAGCTTACAGAATTATAGTTGCAAAGCTTTTGGATAGATACCTCAACAGATTCTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lipase_GDSL

Protein Analysis

375

Amino Acids

41.33

Weight (kDa)

8.43

Isoelectric Point (pI)

32.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lipase_GDSL PF00657 53 - 364 1e-33 GDSL-like Lipase/Acylhydrolase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 644
AciI CCGC 5 cut(s) 155, 311, 440, 642, 963
AcoI YGGCCR 2 cut(s) 651, 945
AcsI RAATTY 1 cut(s) 358
AfaI GTAC 1 cut(s) 109
AfiI CCNNNNNNNGG 2 cut(s) 612, 731
AgeI ACCGGT 1 cut(s) 383
AgsI TTSAA 3 cut(s) 177, 502, 817
AjnI CCWGG 1 cut(s) 295
AluBI AGCT 8 cut(s) 218, 319, 376, 549, 826, 1010, 1073, 1096
AluI AGCT 8 cut(s) 218, 319, 376, 549, 826, 1010, 1073, 1096
Alw21I GWGCWC 2 cut(s) 378, 724
Alw44I GTGCAC 1 cut(s) 720
AlwNI CAGNNNCTG 1 cut(s) 1013
AoxI GGCC 2 cut(s) 651, 945
ApaLI GTGCAC 1 cut(s) 720
ApeKI GCWGC 1 cut(s) 803
ApoI RAATTY 1 cut(s) 358
AseI ATTAAT 1 cut(s) 974
AsiGI ACCGGT 1 cut(s) 383
AspLEI GCGC 1 cut(s) 991
AspS9I GGNCC 2 cut(s) 610, 767
AsuC2I CCSGG 2 cut(s) 190, 608
AsuHPI GGTGA 3 cut(s) 182, 311, 631
AvaII GGWCC 2 cut(s) 610, 767
BaeGI GKGCMC 1 cut(s) 724
BalI TGGCCA 1 cut(s) 947
BanII GRGCYC 1 cut(s) 378
BauI CACGAG 1 cut(s) 86
Bbv12I GWGCWC 2 cut(s) 378, 724
BbvI GCAGC 1 cut(s) 815
BceAI ACGGC 1 cut(s) 256
BciT130I CCWGG 1 cut(s) 297
BcnI CCSGG 2 cut(s) 190, 608
BfaI CTAG 3 cut(s) 219, 320, 789
BfmI CTRYAG 1 cut(s) 892
BglII AGATCT 1 cut(s) 1028
BisI GCNGC 1 cut(s) 804
BlsI GCNGC 1 cut(s) 805
BmcAI AGTACT 1 cut(s) 109
Bme1390I CCNGG 3 cut(s) 190, 297, 608
Bme18I GGWCC 2 cut(s) 610, 767
BmgT120I GGNCC 2 cut(s) 610, 767
BmiI GGNNCC 1 cut(s) 967
BmrFI CCNGG 3 cut(s) 190, 297, 608
BmsI GCATC 4 cut(s) 39, 175, 212, 790
BpuMI CCSGG 2 cut(s) 190, 608
BsaJI CCNNGG 2 cut(s) 295, 606
BsaWI WCCGGW 2 cut(s) 383, 968
Bsc4I CCNNNNNNNGG 2 cut(s) 612, 731
Bse118I RCCGGY 2 cut(s) 340, 383
BseBI CCWGG 1 cut(s) 297
BseDI CCNNGG 2 cut(s) 295, 606
BseGI GGATG 3 cut(s) 740, 962, 1057
BseLI CCNNNNNNNGG 2 cut(s) 612, 731
BseMII CTCAG 1 cut(s) 689
BseSI GKGCMC 1 cut(s) 724
BseXI GCAGC 1 cut(s) 815
Bsh1285I CGRYCG 1 cut(s) 147
BshFI GGCC 2 cut(s) 653, 947
BshTI ACCGGT 1 cut(s) 383
BsiEI CGRYCG 1 cut(s) 147
BsiHKAI GWGCWC 2 cut(s) 378, 724
BsiSI CCGG 7 cut(s) 152, 189, 341, 384, 608, 613, 969
BslFI GGGAC 3 cut(s) 278, 1005, 1061
BslI CCNNNNNNNGG 2 cut(s) 612, 731
BsmFI GGGAC 3 cut(s) 278, 1005, 1061
BsnI GGCC 2 cut(s) 653, 947
Bsp1286I GDGCHC 2 cut(s) 378, 724
Bsp143I GATC 2 cut(s) 907, 1028
BspACI CCGC 5 cut(s) 155, 311, 440, 642, 963
BspANI GGCC 2 cut(s) 653, 947
BspCNI CTCAG 1 cut(s) 688
BspLI GGNNCC 1 cut(s) 967
BspQI GCTCTTC 2 cut(s) 309, 366
BsrBI CCGCTC 1 cut(s) 644
BsrFI RCCGGY 2 cut(s) 340, 383
BssAI RCCGGY 2 cut(s) 340, 383
BssECI CCNNGG 2 cut(s) 295, 606
BssMI GATC 2 cut(s) 907, 1028
BssSI CACGAG 1 cut(s) 86
Bst2BI CACGAG 1 cut(s) 86
Bst2UI CCWGG 1 cut(s) 297
Bst4CI ACNGT 5 cut(s) 148, 257, 628, 757, 1052
Bst6I CTCTTC 4 cut(s) 55, 309, 366, 906
BstDEI CTNAG 2 cut(s) 675, 822
BstF5I GGATG 3 cut(s) 740, 962, 1057
BstHHI GCGC 1 cut(s) 991
BstKTI GATC 2 cut(s) 910, 1031
BstMBI GATC 2 cut(s) 907, 1028
BstMCI CGRYCG 1 cut(s) 147
BstMWI GCNNNNNNNGC 2 cut(s) 650, 659
BstNI CCWGG 1 cut(s) 297
BstSCI CCNGG 3 cut(s) 188, 295, 606
BstSFI CTRYAG 1 cut(s) 892
BstSLI GKGCMC 1 cut(s) 724
BstV1I GCAGC 1 cut(s) 815
BstX2I RGATCY 1 cut(s) 1028
BstYI RGATCY 1 cut(s) 1028
BsuRI GGCC 2 cut(s) 653, 947
BtgZI GCGATG 1 cut(s) 11
BtsCI GGATG 3 cut(s) 740, 962, 1057
CaiI CAGNNNCTG 1 cut(s) 1013
CfoI GCGC 1 cut(s) 991
Cfr10I RCCGGY 2 cut(s) 340, 383
Cfr13I GGNCC 2 cut(s) 610, 767
CpoI CGGWCCG 1 cut(s) 610
Csp6I GTAC 1 cut(s) 108
CspAI ACCGGT 1 cut(s) 383
CspCI CAANNNNNGTGG 2 cut(s) 450, 485
CspI CGGWCCG 1 cut(s) 610
CviAII CATG 1 cut(s) 205
CviQI GTAC 1 cut(s) 108
DdeI CTNAG 2 cut(s) 675, 822
DpnI GATC 2 cut(s) 909, 1030
DpnII GATC 2 cut(s) 907, 1028
DraI TTTAAA 2 cut(s) 363, 918
EaeI YGGCCR 2 cut(s) 651, 945
Eam1104I CTCTTC 4 cut(s) 55, 309, 366, 906
EarI CTCTTC 4 cut(s) 55, 309, 366, 906
Ecl136II GAGCTC 1 cut(s) 376
Eco24I GRGCYC 1 cut(s) 378
Eco32I GATATC 1 cut(s) 580
Eco47I GGWCC 2 cut(s) 610, 767
Eco53kI GAGCTC 1 cut(s) 376
EcoICRI GAGCTC 1 cut(s) 376
EcoO109I RGGNCCY 1 cut(s) 767
EcoRII CCWGG 1 cut(s) 295
EcoRV GATATC 1 cut(s) 580
EcoT38I GRGCYC 1 cut(s) 378
FaeI CATG 1 cut(s) 208
FalI AAGNNNNNCTT 2 cut(s) 533, 565
FaqI GGGAC 3 cut(s) 278, 1005, 1061
FatI CATG 1 cut(s) 204
Fnu4HI GCNGC 1 cut(s) 804
FokI GGATG 3 cut(s) 747, 969, 1044
FriOI GRGCYC 1 cut(s) 378
Fsp4HI GCNGC 1 cut(s) 804
FspBI CTAG 3 cut(s) 219, 320, 789
GlaI GCGC 1 cut(s) 990
GluI GCNGC 1 cut(s) 804
HaeIII GGCC 2 cut(s) 653, 947
HapII CCGG 7 cut(s) 152, 189, 341, 384, 608, 613, 969
HhaI GCGC 1 cut(s) 991
Hin1II CATG 1 cut(s) 208
Hin6I GCGC 1 cut(s) 989
HinP1I GCGC 1 cut(s) 989
HindIII AAGCTT 2 cut(s) 1071, 1094
HinfI GANTC 4 cut(s) 173, 276, 856, 1119
HpaII CCGG 7 cut(s) 152, 189, 341, 384, 608, 613, 969
HphI GGTGA 3 cut(s) 182, 311, 631
Hpy166II GTNNAC 1 cut(s) 722
Hpy188I TCNGA 3 cut(s) 357, 678, 1033
Hpy188III TCNNGA 3 cut(s) 133, 541, 905
Hpy8I GTNNAC 1 cut(s) 722
Hpy99I CGWCG 2 cut(s) 203, 632
HpyAV CCTTC 1 cut(s) 753
HpyCH4III ACNGT 5 cut(s) 148, 257, 628, 757, 1052
HpyCH4V TGCA 5 cut(s) 722, 803, 833, 996, 1091
HpyF10VI GCNNNNNNNGC 2 cut(s) 650, 659
HpyF3I CTNAG 2 cut(s) 675, 822
Hsp92II CATG 1 cut(s) 208
HspAI GCGC 1 cut(s) 989
Kzo9I GATC 2 cut(s) 907, 1028
LguI GCTCTTC 2 cut(s) 309, 366
LmnI GCTCC 2 cut(s) 238, 695
Lsp1109I GCAGC 1 cut(s) 815
LweI GCATC 4 cut(s) 39, 175, 212, 790
MaeI CTAG 3 cut(s) 219, 320, 789
MaeIII GTNAC 3 cut(s) 388, 572, 982
MalI GATC 2 cut(s) 909, 1030
MbiI CCGCTC 1 cut(s) 644
MboI GATC 2 cut(s) 907, 1028
MboII GAAGA 8 cut(s) 42, 45, 285, 326, 383, 714, 893, 1114
MfeI CAATTG 2 cut(s) 177, 467
MflI RGATCY 1 cut(s) 1028
MhlI GDGCHC 2 cut(s) 378, 724
MlsI TGGCCA 1 cut(s) 947
MluCI AATT 5 cut(s) 177, 358, 467, 497, 1080
MluNI TGGCCA 1 cut(s) 947
MlyI GAGTC 1 cut(s) 850
MmeI TCCRAC 1 cut(s) 493
MnlI CCTC 7 cut(s) 440, 475, 516, 758, 909, 933, 1121
Mox20I TGGCCA 1 cut(s) 947
MscI TGGCCA 1 cut(s) 947
MseI TTAA 7 cut(s) 327, 362, 380, 795, 917, 939, 974
MslI CAYNNNNRTG 1 cut(s) 930
Msp20I TGGCCA 1 cut(s) 947
MspI CCGG 7 cut(s) 152, 189, 341, 384, 608, 613, 969
MspR9I CCNGG 3 cut(s) 190, 297, 608
MunI CAATTG 2 cut(s) 177, 467
MvaI CCWGG 1 cut(s) 297
MwoI GCNNNNNNNGC 2 cut(s) 650, 659
NciI CCSGG 2 cut(s) 190, 608
NdeII GATC 2 cut(s) 907, 1028
NlaIII CATG 1 cut(s) 208
NlaIV GGNNCC 1 cut(s) 967
PciSI GCTCTTC 2 cut(s) 309, 366
PfeI GAWTC 3 cut(s) 173, 276, 1119
PinAI ACCGGT 1 cut(s) 383
PkrI GCNGC 1 cut(s) 805
PleI GAGTC 1 cut(s) 850
PpsI GAGTC 1 cut(s) 850
PpuMI RGGWCCY 1 cut(s) 767
PshBI ATTAAT 1 cut(s) 974
Psp124BI GAGCTC 1 cut(s) 378
Psp5II RGGWCCY 1 cut(s) 767
Psp6I CCWGG 1 cut(s) 295
PspGI CCWGG 1 cut(s) 295
PspN4I GGNNCC 1 cut(s) 967
PspPI GGNCC 2 cut(s) 610, 767
PspPPI RGGWCCY 1 cut(s) 767
PstNI CAGNNNCTG 1 cut(s) 1013
PsuI RGATCY 1 cut(s) 1028
RsaI GTAC 1 cut(s) 109
RsaNI GTAC 1 cut(s) 108
RseI CAYNNNNRTG 1 cut(s) 930
Rsr2I CGGWCCG 1 cut(s) 610
RsrII CGGWCCG 1 cut(s) 610
SacI GAGCTC 1 cut(s) 378
SapI GCTCTTC 2 cut(s) 309, 366
SaqAI TTAA 7 cut(s) 327, 362, 380, 795, 917, 939, 974
SatI GCNGC 1 cut(s) 804
Sau3AI GATC 2 cut(s) 907, 1028
Sau96I GGNCC 2 cut(s) 610, 767
ScaI AGTACT 1 cut(s) 109
SchI GAGTC 1 cut(s) 850
ScrFI CCNGG 3 cut(s) 190, 297, 608
SduI GDGCHC 2 cut(s) 378, 724
SfaNI GCATC 4 cut(s) 39, 175, 212, 790
SfcI CTRYAG 1 cut(s) 892
SinI GGWCC 2 cut(s) 610, 767
SmiMI CAYNNNNRTG 1 cut(s) 930
Sse9I AATT 5 cut(s) 177, 358, 467, 497, 1080
SsiI CCGC 5 cut(s) 155, 311, 440, 642, 963
SspI AATATT 1 cut(s) 838
SspMI CTAG 3 cut(s) 219, 320, 789
SstI GAGCTC 1 cut(s) 378
StyD4I CCNGG 3 cut(s) 188, 295, 606
TaaI ACNGT 5 cut(s) 148, 257, 628, 757, 1052
TaqI TCGA 2 cut(s) 183, 349
TasI AATT 5 cut(s) 177, 358, 467, 497, 1080
TatI WGTACW 1 cut(s) 107
TfiI GAWTC 3 cut(s) 173, 276, 1119
Tru1I TTAA 7 cut(s) 327, 362, 380, 795, 917, 939, 974
Tru9I TTAA 7 cut(s) 327, 362, 380, 795, 917, 939, 974
TseI GCWGC 1 cut(s) 803
TspDTI ATGAA 2 cut(s) 523, 1046
VneI GTGCAC 1 cut(s) 720
VpaK11BI GGWCC 2 cut(s) 610, 767
VspI ATTAAT 1 cut(s) 974
XapI RAATTY 1 cut(s) 358
XspI CTAG 3 cut(s) 219, 320, 789
ZrmI AGTACT 1 cut(s) 109
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.