Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0001158

Physical Location & Seq

Genomic Coordinates Reverse (-)

707772 .. 710237

Gene Structure 2466 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1009700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1146 bp

ATGCACTCAGATGCAGGAGGACTAGGAATGTTGAGTCCTAAACTGGTCAGGCTGCAGATGCAGTCGTCATATGTAATTTTCGTTATTTGCTTCTGCAATATTATTAGTATGAATAACGTCACTGAGGCAGCCACGACAGTCAAGCTGCCGGAGAATGTGACCGTCCCGGCTATTATTATATTCGGAGATTCGATTGTTGATACCGGCAACAACAACGAGAACTTCAAGACATTTGCACGCAGCAATTTCCTTCCCTACGGAAAAGACCTCAAGGGAGGAATGCCAACCGGCAGATATTCCAACGGAAAGGTTCCCTCAGACTTCATAGCGGAATCATTTGGAATCAAGGAGCTGTTGCCAGCATACTTGGATCCGACCCTGCAGCCTAATGACATCCTTACCGGTGTTGTCCTAGCAGCCGGTGGCGCAGGTTATGACCCTTTGACAGCAAAACTTGCGGCAGTTGCATCGCTATCCGACCAATTGAAGCAGTTCAAGGAGTACATAGAAAAGCTGAAAGGAATTGTTGGAGAGGAGAAAACAAACTTCATCATAAAAAACAGTGTGATTTTTGTGGTAGCCGGCAGCAACGATATTTCTAATACCTATTTTCTTAGCGGTGTTAGGAAATTGGAGTATGACGTTCCTTCTTACACTGATTTCATGGTCAAATATGCCTCTGATTTCATTAAGGACTTATATGGCTTGGGGGTACGAAGAATAGCCGTACTAAGCATACCACCTATCGGATGCGTGCCATCTCAACGAACGGTAAAAGGAGGCATAGGAAGAGATTGTGACGAAGCACAAAACCAAGCATCCCAGCTGTTCAACTCCAAGCTCTCTGCGGAGATGGATCGTCTTAACAAAAACCTGCCAAACTCGAGAGTTGTCTACATTGACATGTACAATGTGATACTTGATCTCATCACAAACCCTGCTAAACACGGGTTTGAAGTTGTGAATAAAGGTTGTTGTGGTACTGGCCTTATTGAAGTAACAAAACTGTGCAACCAGCTCCAACCTGCCGGGGTCTGCACAGATGACTCTAAGTATTTTTTTTGGGACAGCTACCATCCTACCGAAAGAGCTTACAAGATCGTCGTGAATCAGATGCTCGACAAATATGCCAGCCGCCTGTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lipase_GDSL

Protein Analysis

382

Amino Acids

41.88

Weight (kDa)

6.82

Isoelectric Point (pI)

31.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lipase_GDSL	PF00657	58 - 371	5.9e-35	GDSL-like Lipase/Acylhydrolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001158)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G58520 AT1G58525 AT1G58725 AT1G59030 AT1G59406 AT1G75880 AT1G75880 AT1G75890 AT1G75890 AT1G75890 AT1G75900 AT3G14820 AT3G43550 AT3G43570 AT5G42170
fragaria_vesca	FvH4_2g38112 FvH4_2g38120
malus_domestica	MD08G1009700.v1.1 MD08G1009800.v1.1 MD15G1008800.v1.1 MD15G1008900.v1.1 MD15G1009000.v1.1 MD15G1009100.v1.1 MD15G1009500.v1.1 MD15G1009600.v1.1
prunus_persica	Prupe.1G361800_v2.0.a1 Prupe.1G361800_v2.0.a1 Prupe.1G361900_v2.0.a1 Prupe.1G361900_v2.0.a1 Prupe.1G361900_v2.0.a1 Prupe.1G361900_v2.0.a1 Prupe.1G362000_v2.0.a1 Prupe.1G362100_v2.0.a1
pyrus_communis	pycom08g00820 pycom08g00830 pycom15g00730 pycom15g00740 pycom15g00750 pycom15g00760 pycom15g00770
rosa_chinensis	RchiOBHm_Chr6g0303381 RchiOBHm_Chr6g0303411
rosa_laevigata	RLG00000011087 RLG00000011088
rosa_multiflora	Rmu_sc0002586.1_g000041 Rmu_ssc0000114.1_g000055 Rmu_ssc0000114.1_g000059
rosa_roxburghii	Rroxscaffold_7G00164790 Rroxscaffold_7G00164830
rosa_rugosa	Rorug06G0321000
rosa_samantha	Rh6AG435300 Rh6AG435400 Rh6CG447300 Rh6CG447500 Rh6DG434100 Rh6DG434200
rosa_wichuraiana	Rw6G037690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	3 cut(s)	419, 882, 1033
AccI	GTMKAC	1 cut(s)	894
AciI	CCGC	5 cut(s)	329, 458, 618, 848, 1135
AclWI	GGATC	3 cut(s)	365, 378, 864
AfaI	GTAC	5 cut(s)	503, 714, 729, 908, 982
AfiI	CCNNNNNNNGG	1 cut(s)	746
AflIII	ACRYGT	1 cut(s)	903
AgeI	ACCGGT	1 cut(s)	401
AgsI	TTSAA	6 cut(s)	226, 487, 496, 832, 956, 995
AluBI	AGCT	8 cut(s)	145, 352, 514, 826, 841, 1018, 1071, 1091
AluI	AGCT	8 cut(s)	145, 352, 514, 826, 841, 1018, 1071, 1091
AlwI	GGATC	3 cut(s)	365, 378, 864
Ama87I	CYCGRG	1 cut(s)	883
AoxI	GGCC	1 cut(s)	985
ApeKI	GCWGC	7 cut(s)	52, 128, 145, 240, 382, 416, 585
AsiGI	ACCGGT	1 cut(s)	401
Asp700I	GAANNNNTTC	1 cut(s)	491
AspLEI	GCGC	1 cut(s)	428
AsuC2I	CCSGG	2 cut(s)	167, 1030
AvaI	CYCGRG	1 cut(s)	883
BamHI	GGATCC	1 cut(s)	370
BbvI	GCAGC	7 cut(s)	39, 132, 140, 252, 394, 428, 597
BccI	CCATC	3 cut(s)	766, 847, 1083
BceAI	ACGGC	1 cut(s)	710
BcgI	CGANNNNNNTGC	4 cut(s)	450, 484, 1109, 1143
BcnI	CCSGG	2 cut(s)	167, 1030
BfaI	CTAG	2 cut(s)	23, 413
BfmI	CTRYAG	2 cut(s)	53, 380
BfuAI	ACCTGC	3 cut(s)	419, 882, 1033
BisI	GCNGC	9 cut(s)	53, 129, 146, 241, 383, 417, 459, 586, 1135
BlsI	GCNGC	9 cut(s)	54, 130, 147, 242, 384, 418, 460, 587, 1136
Bme1390I	CCNGG	2 cut(s)	167, 1030
BmeT110I	CYCGRG	1 cut(s)	883
BmiI	GGNNCC	2 cut(s)	312, 372
BmrFI	CCNGG	2 cut(s)	167, 1030
BmsI	GCATC	5 cut(s)	48, 476, 740, 827, 1104
BpuEI	CTTGAG	1 cut(s)	254
BpuMI	CCSGG	2 cut(s)	167, 1030
BsaJI	CCNNGG	1 cut(s)	1029
BsaWI	WCCGGW	1 cut(s)	401
Bsc4I	CCNNNNNNNGG	1 cut(s)	746
Bse118I	RCCGGY	5 cut(s)	203, 287, 401, 419, 581
Bse1I	ACTGG	2 cut(s)	48, 988
BseDI	CCNNGG	1 cut(s)	1029
BseGI	GGATG	4 cut(s)	393, 755, 818, 1075
BseLI	CCNNNNNNNGG	1 cut(s)	746
BseMII	CTCAG	3 cut(s)	21, 114, 330
BseNI	ACTGG	2 cut(s)	48, 988
BseRI	GAGGAG	1 cut(s)	548
BseXI	GCAGC	7 cut(s)	39, 132, 140, 252, 394, 428, 597
BseYI	CCCAGC	1 cut(s)	822
BsgI	GTGCAG	1 cut(s)	1021
BshFI	GGCC	1 cut(s)	987
BshTI	ACCGGT	1 cut(s)	401
BsiHKCI	CYCGRG	1 cut(s)	883
BsiSI	CCGG	8 cut(s)	149, 167, 204, 288, 402, 420, 582, 1029
BslFI	GGGAC	2 cut(s)	149, 1079
BslI	CCNNNNNNNGG	1 cut(s)	746
BsmFI	GGGAC	2 cut(s)	149, 1079
BsmI	GAATGC	1 cut(s)	285
BsnI	GGCC	1 cut(s)	987
BsoBI	CYCGRG	1 cut(s)	883
Bsp1407I	TGTACA	1 cut(s)	906
Bsp143I	GATC	4 cut(s)	370, 856, 922, 1098
BspACI	CCGC	5 cut(s)	329, 458, 618, 848, 1135
BspANI	GGCC	1 cut(s)	987
BspCNI	CTCAG	3 cut(s)	20, 115, 329
BspLI	GGNNCC	2 cut(s)	312, 372
BspMAI	CTGCAG	2 cut(s)	57, 384
BspMI	ACCTGC	3 cut(s)	419, 882, 1033
BspPI	GGATC	3 cut(s)	365, 378, 864
BsrFI	RCCGGY	5 cut(s)	203, 287, 401, 419, 581
BsrGI	TGTACA	1 cut(s)	906
BsrI	ACTGG	2 cut(s)	48, 988
BssAI	RCCGGY	5 cut(s)	203, 287, 401, 419, 581
BssECI	CCNNGG	1 cut(s)	1029
BssMI	GATC	4 cut(s)	370, 856, 922, 1098
Bst4CI	ACNGT	5 cut(s)	139, 163, 563, 772, 1008
Bst6I	CTCTTC	1 cut(s)	784
BstAPI	GCANNNNNTGC	1 cut(s)	455
BstAUI	TGTACA	1 cut(s)	906
BstC8I	GCNNGC	5 cut(s)	238, 360, 583, 755, 1132
BstDEI	CTNAG	6 cut(s)	7, 123, 316, 614, 731, 1050
BstF5I	GGATG	4 cut(s)	393, 755, 818, 1075
BstHHI	GCGC	1 cut(s)	428
BstKTI	GATC	4 cut(s)	373, 859, 925, 1101
BstMBI	GATC	4 cut(s)	370, 856, 922, 1098
BstMWI	GCNNNNNNNGC	4 cut(s)	58, 425, 455, 464
BstNSI	RCATGY	1 cut(s)	907
BstSCI	CCNGG	2 cut(s)	165, 1028
BstSFI	CTRYAG	2 cut(s)	53, 380
BstV1I	GCAGC	7 cut(s)	39, 132, 140, 252, 394, 428, 597
BstX2I	RGATCY	1 cut(s)	370
BstYI	RGATCY	1 cut(s)	370
BsuRI	GGCC	1 cut(s)	987
BtgZI	GCGATG	1 cut(s)	453
BtsCI	GGATG	4 cut(s)	393, 755, 818, 1075
BtsIMutI	CAGTG	3 cut(s)	120, 568, 654
BveI	ACCTGC	3 cut(s)	419, 882, 1033
Cac8I	GCNNGC	5 cut(s)	238, 360, 583, 755, 1132
CfoI	GCGC	1 cut(s)	428
Cfr10I	RCCGGY	5 cut(s)	203, 287, 401, 419, 581
Csp6I	GTAC	5 cut(s)	502, 713, 728, 907, 981
CspAI	ACCGGT	1 cut(s)	401
CviAII	CATG	2 cut(s)	664, 904
CviQI	GTAC	5 cut(s)	502, 713, 728, 907, 981
DdeI	CTNAG	6 cut(s)	7, 123, 316, 614, 731, 1050
DpnI	GATC	4 cut(s)	372, 858, 924, 1100
DpnII	GATC	4 cut(s)	370, 856, 922, 1098
Eam1104I	CTCTTC	1 cut(s)	784
EarI	CTCTTC	1 cut(s)	784
Eco88I	CYCGRG	1 cut(s)	883
FaeI	CATG	2 cut(s)	667, 907
FaqI	GGGAC	2 cut(s)	149, 1079
FatI	CATG	2 cut(s)	663, 903
FauNDI	CATATG	1 cut(s)	70
FblI	GTMKAC	1 cut(s)	894
Fnu4HI	GCNGC	9 cut(s)	53, 129, 146, 241, 383, 417, 459, 586, 1135
FokI	GGATG	4 cut(s)	380, 762, 805, 1062
Fsp4HI	GCNGC	9 cut(s)	53, 129, 146, 241, 383, 417, 459, 586, 1135
FspBI	CTAG	2 cut(s)	23, 413
GlaI	GCGC	1 cut(s)	427
GluI	GCNGC	9 cut(s)	53, 129, 146, 241, 383, 417, 459, 586, 1135
GsaI	CCCAGC	1 cut(s)	826
HaeIII	GGCC	1 cut(s)	987
HapII	CCGG	8 cut(s)	149, 167, 204, 288, 402, 420, 582, 1029
HhaI	GCGC	1 cut(s)	428
Hin1II	CATG	2 cut(s)	667, 907
Hin6I	GCGC	1 cut(s)	426
HinP1I	GCGC	1 cut(s)	426
HinfI	GANTC	6 cut(s)	34, 188, 332, 342, 1046, 1108
HpaII	CCGG	8 cut(s)	149, 167, 204, 288, 402, 420, 582, 1029
Hpy166II	GTNNAC	1 cut(s)	895
Hpy188I	TCNGA	9 cut(s)	10, 185, 319, 375, 478, 682, 749, 1113, 1145
Hpy188III	TCNNGA	3 cut(s)	226, 885, 1105
Hpy8I	GTNNAC	1 cut(s)	895
Hpy99I	CGWCG	1 cut(s)	1106
HpyAV	CCTTC	2 cut(s)	260, 657
HpyCH4III	ACNGT	5 cut(s)	139, 163, 563, 772, 1008
HpyCH4IV	ACGT	2 cut(s)	117, 642
HpyF10VI	GCNNNNNNNGC	4 cut(s)	58, 425, 455, 464
HpyF3I	CTNAG	6 cut(s)	7, 123, 316, 614, 731, 1050
HpySE526I	ACGT	2 cut(s)	117, 642
Hsp92II	CATG	2 cut(s)	667, 907
HspAI	GCGC	1 cut(s)	426
KroI	GCCGGC	1 cut(s)	581
KroNI	GCCGGC	1 cut(s)	583
Kzo9I	GATC	4 cut(s)	370, 856, 922, 1098
LmnI	GCTCC	2 cut(s)	349, 1023
Lsp1109I	GCAGC	7 cut(s)	39, 132, 140, 252, 394, 428, 597
LweI	GCATC	5 cut(s)	48, 476, 740, 827, 1104
MaeI	CTAG	2 cut(s)	23, 413
MaeII	ACGT	2 cut(s)	117, 642
MaeIII	GTNAC	4 cut(s)	118, 157, 797, 997
MalI	GATC	4 cut(s)	372, 858, 924, 1100
MboI	GATC	4 cut(s)	370, 856, 922, 1098
MboII	GAAGA	2 cut(s)	729, 801
MfeI	CAATTG	1 cut(s)	482
MflI	RGATCY	1 cut(s)	370
MluCI	AATT	5 cut(s)	75, 244, 482, 522, 629
MlyI	GAGTC	2 cut(s)	43, 1040
MmeI	TCCRAC	5 cut(s)	324, 398, 501, 508, 1045
MnlI	CCTC	8 cut(s)	11, 118, 269, 278, 325, 526, 688, 773
MroNI	GCCGGC	1 cut(s)	581
MroXI	GAANNNNTTC	1 cut(s)	491
MseI	TTAA	2 cut(s)	690, 864
MslI	CAYNNNNRTG	2 cut(s)	9, 902
MspA1I	CMGCKG	1 cut(s)	826
MspI	CCGG	8 cut(s)	149, 167, 204, 288, 402, 420, 582, 1029
MspR9I	CCNGG	2 cut(s)	167, 1030
MunI	CAATTG	1 cut(s)	482
Mva1269I	GAATGC	1 cut(s)	285
MwoI	GCNNNNNNNGC	4 cut(s)	58, 425, 455, 464
NaeI	GCCGGC	1 cut(s)	583
NciI	CCSGG	2 cut(s)	167, 1030
NdeI	CATATG	1 cut(s)	70
NdeII	GATC	4 cut(s)	370, 856, 922, 1098
NgoMIV	GCCGGC	1 cut(s)	581
NlaIII	CATG	2 cut(s)	667, 907
NlaIV	GGNNCC	2 cut(s)	312, 372
NmuCI	GTSAC	3 cut(s)	118, 157, 797
NspI	RCATGY	1 cut(s)	907
PaeR7I	CTCGAG	1 cut(s)	883
PciI	ACATGT	1 cut(s)	903
PctI	GAATGC	1 cut(s)	285
PdiI	GCCGGC	1 cut(s)	583
PdmI	GAANNNNTTC	1 cut(s)	491
PfeI	GAWTC	4 cut(s)	188, 332, 342, 1108
PinAI	ACCGGT	1 cut(s)	401
PkrI	GCNGC	9 cut(s)	54, 130, 147, 242, 384, 418, 460, 587, 1136
PleI	GAGTC	2 cut(s)	42, 1040
PpsI	GAGTC	2 cut(s)	42, 1040
PscI	ACATGT	1 cut(s)	903
PspFI	CCCAGC	1 cut(s)	822
PspN4I	GGNNCC	2 cut(s)	312, 372
PstI	CTGCAG	2 cut(s)	57, 384
PsuI	RGATCY	1 cut(s)	370
PvuII	CAGCTG	1 cut(s)	826
RsaI	GTAC	5 cut(s)	503, 714, 729, 908, 982
RsaNI	GTAC	5 cut(s)	502, 713, 728, 907, 981
RseI	CAYNNNNRTG	2 cut(s)	9, 902
SaqAI	TTAA	2 cut(s)	690, 864
SatI	GCNGC	9 cut(s)	53, 129, 146, 241, 383, 417, 459, 586, 1135
Sau3AI	GATC	4 cut(s)	370, 856, 922, 1098
SchI	GAGTC	2 cut(s)	43, 1040
ScrFI	CCNGG	2 cut(s)	167, 1030
SfaNI	GCATC	5 cut(s)	48, 476, 740, 827, 1104
SfcI	CTRYAG	2 cut(s)	53, 380
Sfr274I	CTCGAG	1 cut(s)	883
SlaI	CTCGAG	1 cut(s)	883
SmiMI	CAYNNNNRTG	2 cut(s)	9, 902
SmlI	CTYRAG	2 cut(s)	269, 883
SmoI	CTYRAG	2 cut(s)	269, 883
Sse9I	AATT	5 cut(s)	75, 244, 482, 522, 629
SsiI	CCGC	5 cut(s)	329, 458, 618, 848, 1135
SspI	AATATT	1 cut(s)	100
SspMI	CTAG	2 cut(s)	23, 413
StyD4I	CCNGG	2 cut(s)	165, 1028
TaaI	ACNGT	5 cut(s)	139, 163, 563, 772, 1008
TaiI	ACGT	2 cut(s)	120, 645
TaqI	TCGA	3 cut(s)	191, 884, 1119
TasI	AATT	5 cut(s)	75, 244, 482, 522, 629
TatI	WGTACW	2 cut(s)	501, 906
TauI	GCSGC	2 cut(s)	461, 1137
TfiI	GAWTC	4 cut(s)	188, 332, 342, 1108
Tru1I	TTAA	2 cut(s)	690, 864
Tru9I	TTAA	2 cut(s)	690, 864
TscAI	CASTG	3 cut(s)	127, 568, 661
TseFI	GTSAC	3 cut(s)	118, 157, 797
TseI	GCWGC	7 cut(s)	52, 128, 145, 240, 382, 416, 585
Tsp45I	GTSAC	3 cut(s)	118, 157, 797
TspDTI	ATGAA	5 cut(s)	125, 313, 538, 652, 676
TspGWI	ACGGA	2 cut(s)	273, 318
TspRI	CASTG	3 cut(s)	127, 568, 661
XceI	RCATGY	1 cut(s)	907
XhoI	CTCGAG	1 cut(s)	883
XmiI	GTMKAC	1 cut(s)	894
XmnI	GAANNNNTTC	1 cut(s)	491
XspI	CTAG	2 cut(s)	23, 413

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.