Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0013385

Physical Location & Seq

Genomic Coordinates Reverse (-)

2132742 .. 2134864

Gene Structure 2123 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g03470.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 810 bp

ATGGGCACAGAACGTGACATTGATGATTACTTAACCATAGTTTCAATCACCAAAACCGTGTCTGTACTCCCAAAAGTTCTGCACGCACCAAAACTTCTCACCCTCTCAAACTTGGACAGGCAGAGTCCAATCCATATGTACTTGGTTTTCTTTTACATTTCTAACTCTGTTGCTCATCACAAAGACAACGATCTGTTACTTGATGGTGCTGATGATTCGGTTTTCGGAAGCTTGAAGTGTGGATTGGAAGAGACGTTATCGGTGTGGTACCCAGCTGCGGGGAGGTTGAGCTTGAACCCTAGTGATCATGGAAACAAATTCAACTTGTGGTGCAACAACAAAGGCGCTGTTCTCGTCGAGGCGGAGACACCGGTTAGGGTCTCGGAGCTTGGGGACCTCTCTCAGTACAATGAATTTTTTGAGAAATTAGTTCACAAGCCTGTGTTTGATGGAGACTTCTCTGAGACGCCTTTGGTTGTTGGTCAGGTGACCAAGTTTGGTTGTGGAGGCTACTCAGTAGGTATTGGTATCAGCCACTCATTGTTCGACGGACCGGCGGCGTATGAATTTATGAGTGCATGGGCTTCCAATTCTACCGAAACTAAGAAACAACACAAAGCTTCGGAGATTCCTAATTTACCAGTGCACGACAGAGGGACACTACTGATGGACAAGTGTGATGAAGCTCCAAAGGGGAATAGTACAGAGTTGTTGCCAAACCGAAACGAGGACGGTTCTCCCGGAGTGACAAGGGCTGCAGCCGTTGGTCATTTATATCAATTGATCGATACAAGCAGCAGCATTCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0001101 GO:0001558 GO:0003674 GO:0003824 GO:0003996 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005783 GO:0005975 GO:0005976 GO:0006629 GO:0006694 GO:0006725 GO:0008150 GO:0008152 GO:0008202 GO:0008610 GO:0009058 GO:0009059 GO:0009664 GO:0009698 GO:0009699 GO:0009719 GO:0009725 GO:0009733 GO:0009737 GO:0009741 GO:0009832 GO:0009888 GO:0009987 GO:0010033 GO:0010087 GO:0010345 GO:0010383 GO:0010393 GO:0010817 GO:0012505 GO:0014070 GO:0016043 GO:0016051 GO:0016128 GO:0016129 GO:0016131 GO:0016132 GO:0016405 GO:0016740 GO:0016746 GO:0016747 GO:0016874 GO:0016877 GO:0016878 GO:0017144 GO:0019438 GO:0019748 GO:0032502 GO:0033692 GO:0033993 GO:0034637 GO:0034645 GO:0040008 GO:0042221 GO:0042445 GO:0042446 GO:0042546 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044036 GO:0044038 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044424 GO:0044444 GO:0044464 GO:0044550 GO:0045229 GO:0045488 GO:0045489 GO:0048856 GO:0050734 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0052325 GO:0052546 GO:0065007 GO:0065008 GO:0070589 GO:0070592 GO:0071554 GO:0071555 GO:0071669 GO:0071704 GO:0071840 GO:0097305 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00073 map00073

Pfam Domains

Protein Families

Transferase

Protein Analysis

270

Amino Acids

29.4

Weight (kDa)

5.21

Isoelectric Point (pI)

35.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Transferase	PF02458	14 - 205	3.1e-31	Transferase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0013385)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G31910
fragaria_vesca	FvH4_2g40900
malus_domestica	MD08G1058900.v1.1 MD15G1037500.v1.1
prunus_persica	Prupe.1G391500_v2.0.a1
pyrus_communis	pycom08g04880 pycom15g03470
rosa_chinensis	RchiOBHm_Chr6g0299671
rosa_laevigata	RLG00000011398
rosa_multiflora	Rmu_co8516769.1_g000002 Rmu_sc0002895.1_g000007
rosa_roxburghii	Rroxscaffold_7G00168460
rosa_rugosa	Rorug06G0291500
rosa_samantha	Rh6AG402200 Rh6BG410700 Rh6CG416500 Rh6DG403600
rosa_wichuraiana	Rw6G035210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	267
AccB1I	GGYRCC	1 cut(s)	267
AciI	CCGC	3 cut(s)	278, 362, 557
AcsI	RAATTY	3 cut(s)	317, 413, 566
AcyI	GRCGYC	1 cut(s)	467
AfaI	GTAC	5 cut(s)	66, 140, 269, 407, 703
AfiI	CCNNNNNNNGG	3 cut(s)	277, 278, 727
AgeI	ACCGGT	1 cut(s)	370
AgsI	TTSAA	5 cut(s)	45, 235, 295, 322, 806
AjuI	GAANNNNNNNTTGG	2 cut(s)	227, 259
AluBI	AGCT	6 cut(s)	231, 275, 291, 388, 620, 686
AluI	AGCT	6 cut(s)	231, 275, 291, 388, 620, 686
Alw21I	GWGCWC	1 cut(s)	648
Alw26I	GTCTC	5 cut(s)	245, 359, 385, 447, 458
Alw44I	GTGCAC	1 cut(s)	644
ApaLI	GTGCAC	1 cut(s)	644
ApeKI	GCWGC	5 cut(s)	275, 755, 758, 795, 798
ApoI	RAATTY	3 cut(s)	317, 413, 566
AsiGI	ACCGGT	1 cut(s)	370
Asp718I	GGTACC	1 cut(s)	267
AspLEI	GCGC	1 cut(s)	347
AspS9I	GGNCC	2 cut(s)	394, 551
AsuC2I	CCSGG	1 cut(s)	741
AsuHPI	GGTGA	3 cut(s)	40, 91, 499
AvaII	GGWCC	2 cut(s)	394, 551
BaeGI	GKGCMC	2 cut(s)	8, 648
BanI	GGYRCC	1 cut(s)	267
Bbv12I	GWGCWC	1 cut(s)	648
BbvI	GCAGC	3 cut(s)	262, 742, 770
BccI	CCATC	3 cut(s)	197, 443, 661
BceAI	ACGGC	1 cut(s)	746
BclI	TGATCA	1 cut(s)	304
BcnI	CCSGG	1 cut(s)	741
BcoDI	GTCTC	5 cut(s)	245, 359, 385, 447, 458
BfaI	CTAG	1 cut(s)	300
BfmI	CTRYAG	1 cut(s)	756
BfoI	RGCGCY	1 cut(s)	348
BisI	GCNGC	6 cut(s)	276, 558, 756, 759, 796, 799
BlsI	GCNGC	6 cut(s)	277, 559, 757, 760, 797, 800
Bme1390I	CCNGG	1 cut(s)	741
Bme18I	GGWCC	2 cut(s)	394, 551
BmgT120I	GGNCC	2 cut(s)	394, 551
BmiI	GGNNCC	2 cut(s)	269, 395
BmrFI	CCNGG	1 cut(s)	741
BpuMI	CCSGG	1 cut(s)	741
Bsa29I	ATCGAT	1 cut(s)	786
BsaHI	GRCGYC	1 cut(s)	467
BsaI	GGTCTC	1 cut(s)	385
BsaWI	WCCGGW	1 cut(s)	370
Bsc4I	CCNNNNNNNGG	3 cut(s)	277, 278, 727
Bse118I	RCCGGY	2 cut(s)	370, 553
Bse1I	ACTGG	1 cut(s)	641
BseCI	ATCGAT	1 cut(s)	786
BseLI	CCNNNNNNNGG	3 cut(s)	277, 278, 727
BseMII	CTCAG	3 cut(s)	416, 453, 528
BseNI	ACTGG	1 cut(s)	641
BseSI	GKGCMC	2 cut(s)	8, 648
BseXI	GCAGC	3 cut(s)	262, 742, 770
BseYI	CCCAGC	1 cut(s)	271
BsgI	GTGCAG	1 cut(s)	65
BshNI	GGYRCC	1 cut(s)	267
BshTI	ACCGGT	1 cut(s)	370
BshVI	ATCGAT	1 cut(s)	786
BsiHKAI	GWGCWC	1 cut(s)	648
BsiSI	CCGG	3 cut(s)	371, 554, 741
BslFI	GGGAC	2 cut(s)	407, 670
BslI	CCNNNNNNNGG	3 cut(s)	277, 278, 727
BsmAI	GTCTC	5 cut(s)	245, 359, 385, 447, 458
BsmBI	CGTCTC	2 cut(s)	245, 458
BsmFI	GGGAC	2 cut(s)	407, 670
BsmI	GAATGC	1 cut(s)	801
Bso31I	GGTCTC	1 cut(s)	385
Bsp1286I	GDGCHC	2 cut(s)	8, 648
Bsp143I	GATC	3 cut(s)	190, 304, 783
BspACI	CCGC	3 cut(s)	278, 362, 557
BspCNI	CTCAG	3 cut(s)	415, 454, 527
BspDI	ATCGAT	1 cut(s)	786
BspLI	GGNNCC	2 cut(s)	269, 395
BspMAI	CTGCAG	1 cut(s)	760
BspT107I	GGYRCC	1 cut(s)	267
BspTNI	GGTCTC	1 cut(s)	385
BsrFI	RCCGGY	2 cut(s)	370, 553
BsrI	ACTGG	1 cut(s)	641
BssAI	RCCGGY	2 cut(s)	370, 553
BssMI	GATC	3 cut(s)	190, 304, 783
BssNI	GRCGYC	1 cut(s)	467
Bst4CI	ACNGT	2 cut(s)	58, 734
Bst6I	CTCTTC	1 cut(s)	243
BstACI	GRCGYC	1 cut(s)	467
BstC8I	GCNNGC	1 cut(s)	84
BstDEI	CTNAG	4 cut(s)	402, 462, 514, 603
BstEII	GGTNACC	1 cut(s)	487
BstH2I	RGCGCY	1 cut(s)	348
BstHHI	GCGC	1 cut(s)	347
BstKTI	GATC	3 cut(s)	193, 307, 786
BstMAI	GTCTC	5 cut(s)	245, 359, 385, 447, 458
BstMBI	GATC	3 cut(s)	190, 304, 783
BstPI	GGTNACC	1 cut(s)	487
BstSCI	CCNGG	1 cut(s)	739
BstSFI	CTRYAG	1 cut(s)	756
BstSLI	GKGCMC	2 cut(s)	8, 648
BstV1I	GCAGC	3 cut(s)	262, 742, 770
Bsu15I	ATCGAT	1 cut(s)	786
BsuTUI	ATCGAT	1 cut(s)	786
BtsIMutI	CAGTG	1 cut(s)	648
Cac8I	GCNNGC	1 cut(s)	84
CfoI	GCGC	1 cut(s)	347
Cfr10I	RCCGGY	2 cut(s)	370, 553
Cfr13I	GGNCC	2 cut(s)	394, 551
ClaI	ATCGAT	1 cut(s)	786
CpoI	CGGWCCG	1 cut(s)	551
CseI	GACGC	1 cut(s)	475
Csp6I	GTAC	5 cut(s)	65, 139, 268, 406, 702
CspAI	ACCGGT	1 cut(s)	370
CspI	CGGWCCG	1 cut(s)	551
CviAII	CATG	2 cut(s)	308, 579
CviQI	GTAC	5 cut(s)	65, 139, 268, 406, 702
DdeI	CTNAG	4 cut(s)	402, 462, 514, 603
DpnI	GATC	3 cut(s)	192, 306, 785
DpnII	GATC	3 cut(s)	190, 304, 783
Eam1104I	CTCTTC	1 cut(s)	243
EarI	CTCTTC	1 cut(s)	243
EciI	GGCGGA	1 cut(s)	377
Eco31I	GGTCTC	1 cut(s)	385
Eco47I	GGWCC	2 cut(s)	394, 551
Eco91I	GGTNACC	1 cut(s)	487
EcoO109I	RGGNCCY	1 cut(s)	394
EcoO65I	GGTNACC	1 cut(s)	487
Esp3I	CGTCTC	2 cut(s)	245, 458
FaeI	CATG	2 cut(s)	311, 582
FaiI	YATR	8 cut(s)	38, 135, 137, 309, 564, 572, 580, 775
FaqI	GGGAC	2 cut(s)	407, 670
FatI	CATG	2 cut(s)	307, 578
FauI	CCCGC	1 cut(s)	271
FauNDI	CATATG	1 cut(s)	135
FbaI	TGATCA	1 cut(s)	304
Fnu4HI	GCNGC	6 cut(s)	276, 558, 756, 759, 796, 799
Fsp4HI	GCNGC	6 cut(s)	276, 558, 756, 759, 796, 799
FspBI	CTAG	1 cut(s)	300
GlaI	GCGC	1 cut(s)	346
GluI	GCNGC	6 cut(s)	276, 558, 756, 759, 796, 799
GsaI	CCCAGC	1 cut(s)	275
HaeII	RGCGCY	1 cut(s)	348
HapII	CCGG	3 cut(s)	371, 554, 741
HgaI	GACGC	1 cut(s)	475
HhaI	GCGC	1 cut(s)	347
Hin1I	GRCGYC	1 cut(s)	467
Hin1II	CATG	2 cut(s)	311, 582
Hin6I	GCGC	1 cut(s)	345
HinP1I	GCGC	1 cut(s)	345
HindIII	AAGCTT	2 cut(s)	229, 618
HinfI	GANTC	3 cut(s)	124, 215, 628
HpaII	CCGG	3 cut(s)	371, 554, 741
HphI	GGTGA	3 cut(s)	40, 91, 499
Hpy166II	GTNNAC	2 cut(s)	433, 646
Hpy188I	TCNGA	4 cut(s)	227, 385, 463, 625
Hpy8I	GTNNAC	2 cut(s)	433, 646
Hpy99I	CGWCG	2 cut(s)	359, 551
HpyCH4III	ACNGT	2 cut(s)	58, 734
HpyCH4IV	ACGT	2 cut(s)	13, 254
HpyCH4V	TGCA	5 cut(s)	82, 333, 578, 646, 758
HpyF3I	CTNAG	4 cut(s)	402, 462, 514, 603
HpySE526I	ACGT	2 cut(s)	13, 254
Hsp92I	GRCGYC	1 cut(s)	467
Hsp92II	CATG	2 cut(s)	311, 582
HspAI	GCGC	1 cut(s)	345
KpnI	GGTACC	1 cut(s)	271
Ksp22I	TGATCA	1 cut(s)	304
Kzo9I	GATC	3 cut(s)	190, 304, 783
LmnI	GCTCC	2 cut(s)	385, 691
LpnPI	CCDG	8 cut(s)	103, 285, 384, 453, 470, 567, 654, 754
Lsp1109I	GCAGC	3 cut(s)	262, 742, 770
MaeI	CTAG	1 cut(s)	300
MaeII	ACGT	2 cut(s)	13, 254
MaeIII	GTNAC	4 cut(s)	14, 195, 487, 745
MalI	GATC	3 cut(s)	192, 306, 785
MboI	GATC	3 cut(s)	190, 304, 783
MboII	GAAGA	1 cut(s)	260
MfeI	CAATTG	1 cut(s)	779
MhlI	GDGCHC	2 cut(s)	8, 648
MluCI	AATT	7 cut(s)	317, 413, 425, 566, 589, 634, 779
MlyI	GAGTC	1 cut(s)	133
MnlI	CCTC	7 cut(s)	113, 276, 352, 407, 500, 647, 721
MseI	TTAA	1 cut(s)	32
MspA1I	CMGCKG	1 cut(s)	275
MspI	CCGG	3 cut(s)	371, 554, 741
MspR9I	CCNGG	1 cut(s)	741
MunI	CAATTG	1 cut(s)	779
Mva1269I	GAATGC	1 cut(s)	801
NciI	CCSGG	1 cut(s)	741
NdeI	CATATG	1 cut(s)	135
NdeII	GATC	3 cut(s)	190, 304, 783
NlaIII	CATG	2 cut(s)	311, 582
NlaIV	GGNNCC	2 cut(s)	269, 395
NmuCI	GTSAC	3 cut(s)	14, 487, 745
PctI	GAATGC	1 cut(s)	801
PfeI	GAWTC	2 cut(s)	215, 628
PfoI	TCCNGGA	1 cut(s)	739
PinAI	ACCGGT	1 cut(s)	370
PkrI	GCNGC	6 cut(s)	277, 559, 757, 760, 797, 800
PleI	GAGTC	1 cut(s)	132
PpsI	GAGTC	1 cut(s)	132
PpuMI	RGGWCCY	1 cut(s)	394
Psp5II	RGGWCCY	1 cut(s)	394
PspEI	GGTNACC	1 cut(s)	487
PspFI	CCCAGC	1 cut(s)	271
PspN4I	GGNNCC	2 cut(s)	269, 395
PspPI	GGNCC	2 cut(s)	394, 551
PspPPI	RGGWCCY	1 cut(s)	394
PstI	CTGCAG	1 cut(s)	760
PvuII	CAGCTG	1 cut(s)	275
RsaI	GTAC	5 cut(s)	66, 140, 269, 407, 703
RsaNI	GTAC	5 cut(s)	65, 139, 268, 406, 702
Rsr2I	CGGWCCG	1 cut(s)	551
RsrII	CGGWCCG	1 cut(s)	551
SaqAI	TTAA	1 cut(s)	32
SatI	GCNGC	6 cut(s)	276, 558, 756, 759, 796, 799
Sau3AI	GATC	3 cut(s)	190, 304, 783
Sau96I	GGNCC	2 cut(s)	394, 551
SchI	GAGTC	1 cut(s)	133
ScrFI	CCNGG	1 cut(s)	741
SduI	GDGCHC	2 cut(s)	8, 648
SfcI	CTRYAG	1 cut(s)	756
SinI	GGWCC	2 cut(s)	394, 551
Sse9I	AATT	7 cut(s)	317, 413, 425, 566, 589, 634, 779
SsiI	CCGC	3 cut(s)	278, 362, 557
SspMI	CTAG	1 cut(s)	300
StyD4I	CCNGG	1 cut(s)	739
TaaI	ACNGT	2 cut(s)	58, 734
TaiI	ACGT	2 cut(s)	16, 257
TaqI	TCGA	3 cut(s)	357, 546, 786
TasI	AATT	7 cut(s)	317, 413, 425, 566, 589, 634, 779
TatI	WGTACW	4 cut(s)	64, 138, 405, 701
TauI	GCSGC	1 cut(s)	560
TfiI	GAWTC	2 cut(s)	215, 628
Tru1I	TTAA	1 cut(s)	32
Tru9I	TTAA	1 cut(s)	32
TscAI	CASTG	1 cut(s)	648
TseFI	GTSAC	3 cut(s)	14, 487, 745
TseI	GCWGC	5 cut(s)	275, 755, 758, 795, 798
Tsp45I	GTSAC	3 cut(s)	14, 487, 745
TspDTI	ATGAA	3 cut(s)	426, 579, 696
TspGWI	ACGGA	1 cut(s)	564
TspRI	CASTG	1 cut(s)	648
VneI	GTGCAC	1 cut(s)	644
VpaK11BI	GGWCC	2 cut(s)	394, 551
XapI	RAATTY	3 cut(s)	317, 413, 566
XspI	CTAG	1 cut(s)	300

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.