Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0021286

Physical Location & Seq

Genomic Coordinates Forward (+)

2174685 .. 2175209

Gene Structure 525 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g03560.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 525 bp

ATGCTGGAACAGGTTCTTCATAAGAGGGTGATTGGTCAAGATAAAGCTGTGAAATCAGTAGCTGATGCAATTCGACGTTCAAGGGCAGGTCTATCTGACCCAAATCGACCAATAGCTAGTTTTATGTTTACGGGTCCTGCTGGTGTGGGAAAAACCGAGCTTGCAAAGGTCTTGGCTAGCTATCTCTTTAACACTGAAAATGCACTTGTCAGAATTGATATGAGTGAGTACATGGAAAAACATGCGGTTTCACGCTTGGTTGGGGCACCACCTGGTTACGTCGGTTATGAAGTTGGGCAGCTAACAGAAGTGGTTTGTCGAAGACCTTATTGTGTAGTGCTATTCGATGAAATTGAGAAAGCGCATCATGATGTCTTCAACATTTTGTTACAACTGTTGGATGATGGGAGGATAACCGACTCTCAAGGGCGAACTGTAAGCTTCACCAATTGTGTCGTGATAATGACCTCAAGCCTGGGCTCCCACTACATACTCGAAACTCTTCGTAATGCACACGATAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009941 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko04213 map04213

Pfam Domains

Protein Families

AAA AAA_2 ClpB_D2-small Clp_N

Protein Analysis

175

Amino Acids

19.27

Weight (kDa)

6.59

Isoelectric Point (pI)

51.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sigma54_activat	PF00158	12 - 155	4.7e-06	Sigma-54 interaction domain
AAA_2	PF07724	36 - 168	1.3e-55	AAA domain (Cdc48 subfamily)
AAA_5	PF07728	41 - 157	5e-12	AAA domain (dynein-related subfamily)
AAA	PF00004	42 - 157	6.8e-11	ATPase family associated with various cellular activities (AAA)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0021286)

Species	Orthologous Gene IDs
pyrus_communis	pycom15g03560
rosa_chinensis	RchiOBHm_Chr1g0330741 RchiOBHm_Chr7g0224361
rosa_multiflora	Rmu_co8256943.1_g000001
rosa_samantha	Rh7DG366900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	77
AccB1I	GGYRCC	1 cut(s)	265
AciI	CCGC	1 cut(s)	245
AfaI	GTAC	1 cut(s)	230
AgsI	TTSAA	2 cut(s)	81, 379
AjnI	CCWGG	2 cut(s)	271, 474
AluBI	AGCT	8 cut(s)	47, 62, 116, 160, 180, 301, 441, 522
AluI	AGCT	8 cut(s)	47, 62, 116, 160, 180, 301, 441, 522
AlwNI	CAGNNNCTG	1 cut(s)	62
ApeKI	GCWGC	1 cut(s)	298
Asp700I	GAANNNNTTC	2 cut(s)	12, 501
AspLEI	GCGC	1 cut(s)	364
AspS9I	GGNCC	1 cut(s)	134
AsuHPI	GGTGA	2 cut(s)	40, 436
AsuNHI	GCTAGC	1 cut(s)	176
AvaII	GGWCC	1 cut(s)	134
BaeGI	GKGCMC	1 cut(s)	268
BanI	GGYRCC	1 cut(s)	265
BanII	GRGCYC	1 cut(s)	482
BbsI	GAAGAC	2 cut(s)	328, 367
BbvI	GCAGC	1 cut(s)	310
BccI	CCATC	1 cut(s)	398
BciT130I	CCWGG	2 cut(s)	273, 476
BfaI	CTAG	3 cut(s)	117, 177, 523
BfuAI	ACCTGC	1 cut(s)	77
BisI	GCNGC	1 cut(s)	299
BlsI	GCNGC	1 cut(s)	300
Bme1390I	CCNGG	2 cut(s)	273, 476
Bme18I	GGWCC	1 cut(s)	134
BmgT120I	GGNCC	1 cut(s)	134
BmiI	GGNNCC	3 cut(s)	135, 267, 481
BmrFI	CCNGG	2 cut(s)	273, 476
BmsI	GCATC	2 cut(s)	55, 373
BmtI	GCTAGC	1 cut(s)	180
BpiI	GAAGAC	2 cut(s)	328, 367
BpuEI	CTTGAG	2 cut(s)	408, 454
BsaJI	CCNNGG	1 cut(s)	475
BseBI	CCWGG	2 cut(s)	273, 476
BseDI	CCNNGG	1 cut(s)	475
BseGI	GGATG	1 cut(s)	406
BseSI	GKGCMC	1 cut(s)	268
BseXI	GCAGC	1 cut(s)	310
BshNI	GGYRCC	1 cut(s)	265
Bsp1286I	GDGCHC	2 cut(s)	268, 482
BspACI	CCGC	1 cut(s)	245
BspHI	TCATGA	1 cut(s)	367
BspLI	GGNNCC	3 cut(s)	135, 267, 481
BspMI	ACCTGC	1 cut(s)	77
BspOI	GCTAGC	1 cut(s)	180
BspT107I	GGYRCC	1 cut(s)	265
BssECI	CCNNGG	1 cut(s)	475
Bst2UI	CCWGG	2 cut(s)	273, 476
Bst4CI	ACNGT	2 cut(s)	396, 436
Bst6I	CTCTTC	1 cut(s)	507
BstC8I	GCNNGC	2 cut(s)	162, 178
BstF5I	GGATG	1 cut(s)	406
BstHHI	GCGC	1 cut(s)	364
BstNI	CCWGG	2 cut(s)	273, 476
BstNSI	RCATGY	1 cut(s)	245
BstSCI	CCNGG	2 cut(s)	271, 474
BstSLI	GKGCMC	1 cut(s)	268
BstV1I	GCAGC	1 cut(s)	310
BstV2I	GAAGAC	2 cut(s)	328, 367
BtsCI	GGATG	1 cut(s)	406
BtsIMutI	CAGTG	1 cut(s)	192
BveI	ACCTGC	1 cut(s)	77
Cac8I	GCNNGC	2 cut(s)	162, 178
CaiI	CAGNNNCTG	1 cut(s)	62
CciI	TCATGA	1 cut(s)	367
CfoI	GCGC	1 cut(s)	364
Cfr13I	GGNCC	1 cut(s)	134
CsiI	ACCWGGT	1 cut(s)	271
Csp6I	GTAC	1 cut(s)	229
CviAII	CATG	3 cut(s)	232, 242, 368
CviQI	GTAC	1 cut(s)	229
Eam1104I	CTCTTC	1 cut(s)	507
EarI	CTCTTC	1 cut(s)	507
Eco24I	GRGCYC	1 cut(s)	482
Eco47I	GGWCC	1 cut(s)	134
EcoO109I	RGGNCCY	1 cut(s)	134
EcoRII	CCWGG	2 cut(s)	271, 474
EcoT38I	GRGCYC	1 cut(s)	482
FaeI	CATG	3 cut(s)	235, 245, 371
FaiI	YATR	8 cut(s)	21, 125, 221, 233, 243, 288, 369, 491
FatI	CATG	3 cut(s)	231, 241, 367
Fnu4HI	GCNGC	1 cut(s)	299
FokI	GGATG	1 cut(s)	413
FriOI	GRGCYC	1 cut(s)	482
Fsp4HI	GCNGC	1 cut(s)	299
FspBI	CTAG	3 cut(s)	117, 177, 523
GlaI	GCGC	1 cut(s)	363
GluI	GCNGC	1 cut(s)	299
HhaI	GCGC	1 cut(s)	364
Hin1II	CATG	3 cut(s)	235, 245, 371
Hin6I	GCGC	1 cut(s)	362
HinP1I	GCGC	1 cut(s)	362
HindIII	AAGCTT	1 cut(s)	439
HinfI	GANTC	1 cut(s)	419
HphI	GGTGA	2 cut(s)	40, 436
Hpy166II	GTNNAC	1 cut(s)	129
Hpy188I	TCNGA	2 cut(s)	97, 212
Hpy188III	TCNNGA	3 cut(s)	38, 368, 457
Hpy8I	GTNNAC	1 cut(s)	129
Hpy99I	CGWCG	2 cut(s)	78, 284
HpyCH4III	ACNGT	2 cut(s)	396, 436
HpyCH4IV	ACGT	2 cut(s)	76, 279
HpyCH4V	TGCA	4 cut(s)	68, 164, 203, 512
HpySE526I	ACGT	2 cut(s)	76, 279
Hsp92II	CATG	3 cut(s)	235, 245, 371
HspAI	GCGC	1 cut(s)	362
LmnI	GCTCC	1 cut(s)	485
LpnPI	CCDG	7 cut(s)	72, 126, 150, 258, 285, 461, 488
Lsp1109I	GCAGC	1 cut(s)	310
LweI	GCATC	2 cut(s)	55, 373
MabI	ACCWGGT	1 cut(s)	271
MaeI	CTAG	3 cut(s)	117, 177, 523
MaeII	ACGT	2 cut(s)	76, 279
MaeIII	GTNAC	2 cut(s)	275, 387
MboII	GAAGA	4 cut(s)	8, 333, 367, 494
MfeI	CAATTG	1 cut(s)	448
MhlI	GDGCHC	2 cut(s)	268, 482
MluCI	AATT	4 cut(s)	69, 213, 351, 448
MlyI	GAGTC	1 cut(s)	413
MmeI	TCCRAC	1 cut(s)	378
MnlI	CCTC	3 cut(s)	18, 402, 478
MroXI	GAANNNNTTC	2 cut(s)	12, 501
MseI	TTAA	1 cut(s)	189
MslI	CAYNNNNRTG	1 cut(s)	369
MspR9I	CCNGG	2 cut(s)	273, 476
MunI	CAATTG	1 cut(s)	448
MvaI	CCWGG	2 cut(s)	273, 476
NheI	GCTAGC	1 cut(s)	176
NlaIII	CATG	3 cut(s)	235, 245, 371
NlaIV	GGNNCC	3 cut(s)	135, 267, 481
NspI	RCATGY	1 cut(s)	245
PagI	TCATGA	1 cut(s)	367
PdmI	GAANNNNTTC	2 cut(s)	12, 501
PkrI	GCNGC	1 cut(s)	300
PleI	GAGTC	1 cut(s)	413
PpsI	GAGTC	1 cut(s)	413
PpuMI	RGGWCCY	1 cut(s)	134
Psp5II	RGGWCCY	1 cut(s)	134
Psp6I	CCWGG	2 cut(s)	271, 474
PspGI	CCWGG	2 cut(s)	271, 474
PspN4I	GGNNCC	3 cut(s)	135, 267, 481
PspPI	GGNCC	1 cut(s)	134
PspPPI	RGGWCCY	1 cut(s)	134
PstNI	CAGNNNCTG	1 cut(s)	62
RsaI	GTAC	1 cut(s)	230
RsaNI	GTAC	1 cut(s)	229
RseI	CAYNNNNRTG	1 cut(s)	369
SaqAI	TTAA	1 cut(s)	189
SatI	GCNGC	1 cut(s)	299
Sau96I	GGNCC	1 cut(s)	134
SchI	GAGTC	1 cut(s)	413
ScrFI	CCNGG	2 cut(s)	273, 476
SduI	GDGCHC	2 cut(s)	268, 482
SexAI	ACCWGGT	1 cut(s)	271
SfaNI	GCATC	2 cut(s)	55, 373
SinI	GGWCC	1 cut(s)	134
SmiMI	CAYNNNNRTG	1 cut(s)	369
SmlI	CTYRAG	2 cut(s)	423, 469
SmoI	CTYRAG	2 cut(s)	423, 469
Sse9I	AATT	4 cut(s)	69, 213, 351, 448
SsiI	CCGC	1 cut(s)	245
SspMI	CTAG	3 cut(s)	117, 177, 523
StyD4I	CCNGG	2 cut(s)	271, 474
TaaI	ACNGT	2 cut(s)	396, 436
TaiI	ACGT	2 cut(s)	79, 282
TaqI	TCGA	5 cut(s)	73, 106, 319, 345, 495
TasI	AATT	4 cut(s)	69, 213, 351, 448
TatI	WGTACW	1 cut(s)	228
Tru1I	TTAA	1 cut(s)	189
Tru9I	TTAA	1 cut(s)	189
TscAI	CASTG	1 cut(s)	199
TseI	GCWGC	1 cut(s)	298
TspDTI	ATGAA	3 cut(s)	8, 303, 363
TspRI	CASTG	1 cut(s)	199
VpaK11BI	GGWCC	1 cut(s)	134
XceI	RCATGY	1 cut(s)	245
XmnI	GAANNNNTTC	2 cut(s)	12, 501
XspI	CTAG	3 cut(s)	117, 177, 523

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.