RchiOBHm_Chr7g0224361

Belongs to the ClpA ClpB family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0021286
Physical Location & Seq
Reverse (-)
46431058 .. 46431750
693 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ20090

Sequence Viewer

Length: 693 bp
ATGGGTGTAATGAAATATCAGAAAATTCATTCTCTCAATCTTGTCTTATTTGACTCAGTTGAGGAAGTTTCAACAAATGAAGCCAATCGCCTCCTCAAGATGGAAGAGACCCTCCATAAGCGGGTTATTAGTCAGGATGAAGCAGTCAGCGCTATTAGGAGAGCTATTCGTCGAGCTCGTGTTGGACTGAGGAATCCTAATCGGCCAAATGCCAGTTTCATCTTTTATGGACCAACAGGTGTTGGAAAATCTGAGCTCGTAAAAACTTTGGCGACTAGCTATTTTGGCTCTGAAGAATCAATGGTGAGGCTTGATATGAGTGAGTTCATGGAAGAGCACTCTGTTTCCAAGCTCATTGGTTCTCCCCCTGGTTATGTTGGTTACACAGAAGGCGGTCAGCTGGTTGAAGCCGTTCGTCACCGTCCTTACACTATGGTGCTTTTTGATGAGATTAAGAAGGCTCATCCTAAAATTTTCAACTTGATGCTTCAAATACTTGAGGATGGAAGATTGACTGACAGCAAAGGCAGAATTGTAGATTTCAAGAATACACTAATCATTATGACGTCTAATGTTGGAAGCAGTGAGATTGAGAAAGGAGTGAGATTTGACCTGGCCATGGATGAAGACAAGGATTGCAGTTACAAACAAATTAAGGGCTTGGTGACAGAGAAATTGAAACACCACTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0004176 GO:0005488 GO:0005515 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006508 GO:0006605 GO:0006807 GO:0006810 GO:0006886 GO:0006996 GO:0008104 GO:0008150 GO:0008152 GO:0008233 GO:0009507 GO:0009526 GO:0009528 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009657 GO:0009658 GO:0009706 GO:0009719 GO:0009725 GO:0009735 GO:0009889 GO:0009941 GO:0009987 GO:0010033 GO:0010380 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017038 GO:0017111 GO:0019222 GO:0019538 GO:0019866 GO:0022607 GO:0030312 GO:0031090 GO:0031323 GO:0031326 GO:0031897 GO:0031967 GO:0031969 GO:0031975 GO:0031976 GO:0031984 GO:0032991 GO:0033036 GO:0033365 GO:0034214 GO:0034357 GO:0034613 GO:0042170 GO:0042221 GO:0042623 GO:0042651 GO:0042802 GO:0042803 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044238 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0045036 GO:0045037 GO:0045184 GO:0046907 GO:0046983 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051179 GO:0051193 GO:0051234 GO:0051259 GO:0051641 GO:0051649 GO:0055035 GO:0055085 GO:0065002 GO:0065003 GO:0065007 GO:0070011 GO:0070727 GO:0071702 GO:0071704 GO:0071705 GO:0071806 GO:0071840 GO:0071944 GO:0072594 GO:0072596 GO:0072598 GO:0090056 GO:0098796 GO:0140096 GO:1901401 GO:1901463 GO:1901564
KEGG Pathways
Metabolic & Signaling
ko01100 map01100
Pfam Domains
Protein Families
AAA AAA_2 ClpB_D2-small Clp_N UVR

Protein Analysis

230

Amino Acids

26.09

Weight (kDa)

8.52

Isoelectric Point (pI)

42.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AAA_2 PF07724 68 - 230 5.7e-57 AAA domain (Cdc48 subfamily)
AAA_5 PF07728 73 - 194 7.4e-12 AAA domain (dynein-related subfamily)
AAA PF00004 74 - 197 4.3e-07 ATPase family associated with various cellular activities (AAA)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0021286)

Species Orthologous Gene IDs
pyrus_communis pycom15g03560
rosa_chinensis RchiOBHm_Chr1g0330741 RchiOBHm_Chr7g0224361
rosa_multiflora Rmu_co8256943.1_g000001
rosa_samantha Rh7DG366900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 569
AciI CCGC 2 cut(s) 121, 393
AcoI YGGCCR 2 cut(s) 203, 615
AcsI RAATTY 2 cut(s) 24, 471
AcuI CTGAAG 1 cut(s) 312
AcyI GRCGYC 1 cut(s) 566
AfeI AGCGCT 1 cut(s) 151
AfiI CCNNNNNNNGG 3 cut(s) 100, 121, 619
AgsI TTSAA 6 cut(s) 72, 407, 478, 491, 544, 679
AjnI CCWGG 2 cut(s) 367, 612
AleI CACNNNNGTG 1 cut(s) 434
AluBI AGCT 6 cut(s) 164, 176, 256, 279, 352, 400
AluI AGCT 6 cut(s) 164, 176, 256, 279, 352, 400
Alw21I GWGCWC 3 cut(s) 178, 258, 339
Alw26I GTCTC 1 cut(s) 101
Aor51HI AGCGCT 1 cut(s) 151
AoxI GGCC 2 cut(s) 203, 615
ApoI RAATTY 2 cut(s) 24, 471
Asp700I GAANNNNTTC 1 cut(s) 411
AspLEI GCGC 1 cut(s) 152
AspS9I GGNCC 1 cut(s) 230
AsuHPI GGTGA 3 cut(s) 316, 410, 676
AvaII GGWCC 1 cut(s) 230
BalI TGGCCA 1 cut(s) 617
BanII GRGCYC 2 cut(s) 178, 258
BauI CACGAG 1 cut(s) 177
BbsI GAAGAC 1 cut(s) 633
Bbv12I GWGCWC 3 cut(s) 178, 258, 339
BccI CCATC 2 cut(s) 94, 497
BceAI ACGGC 1 cut(s) 395
BciT130I CCWGG 2 cut(s) 369, 614
BcoDI GTCTC 1 cut(s) 101
BfaI CTAG 1 cut(s) 276
BfoI RGCGCY 1 cut(s) 153
Bme1390I CCNGG 2 cut(s) 369, 614
Bme18I GGWCC 1 cut(s) 230
BmgT120I GGNCC 1 cut(s) 230
BmrFI CCNGG 2 cut(s) 369, 614
BmsI GCATC 1 cut(s) 474
BpiI GAAGAC 1 cut(s) 633
BpuEI CTTGAG 2 cut(s) 80, 518
BsaHI GRCGYC 1 cut(s) 566
BsaI GGTCTC 1 cut(s) 101
BsaJI CCNNGG 2 cut(s) 367, 618
Bsc4I CCNNNNNNNGG 3 cut(s) 100, 121, 619
Bse1I ACTGG 1 cut(s) 213
BseBI CCWGG 2 cut(s) 369, 614
BseDI CCNNGG 2 cut(s) 367, 618
BseGI GGATG 4 cut(s) 142, 463, 508, 628
BseLI CCNNNNNNNGG 3 cut(s) 100, 121, 619
BseMII CTCAG 3 cut(s) 69, 179, 243
BseNI ACTGG 1 cut(s) 213
BseRI GAGGAG 1 cut(s) 83
BshFI GGCC 2 cut(s) 205, 617
BsiHKAI GWGCWC 3 cut(s) 178, 258, 339
BslI CCNNNNNNNGG 3 cut(s) 100, 121, 619
BsmAI GTCTC 1 cut(s) 101
BsnI GGCC 2 cut(s) 205, 617
Bso31I GGTCTC 1 cut(s) 101
Bsp1286I GDGCHC 3 cut(s) 178, 258, 339
Bsp19I CCATGG 1 cut(s) 618
BspACI CCGC 2 cut(s) 121, 393
BspANI GGCC 2 cut(s) 205, 617
BspCNI CTCAG 3 cut(s) 68, 180, 244
BspQI GCTCTTC 1 cut(s) 327
BspTNI GGTCTC 1 cut(s) 101
BsrI ACTGG 1 cut(s) 213
BssECI CCNNGG 2 cut(s) 367, 618
BssNI GRCGYC 1 cut(s) 566
BssSI CACGAG 1 cut(s) 177
BssT1I CCWWGG 1 cut(s) 618
Bst2BI CACGAG 1 cut(s) 177
Bst2UI CCWGG 2 cut(s) 369, 614
Bst4CI ACNGT 1 cut(s) 422
Bst6I CTCTTC 2 cut(s) 99, 327
BstACI GRCGYC 1 cut(s) 566
BstDEI CTNAG 3 cut(s) 55, 188, 252
BstDSI CCRYGG 1 cut(s) 618
BstF5I GGATG 4 cut(s) 142, 463, 508, 628
BstH2I RGCGCY 1 cut(s) 153
BstHHI GCGC 1 cut(s) 152
BstMAI GTCTC 1 cut(s) 101
BstMWI GCNNNNNNNGC 2 cut(s) 149, 285
BstNI CCWGG 2 cut(s) 369, 614
BstSCI CCNGG 2 cut(s) 367, 612
BstV2I GAAGAC 1 cut(s) 633
BsuRI GGCC 2 cut(s) 205, 617
BtgI CCRYGG 1 cut(s) 618
BtsCI GGATG 4 cut(s) 142, 463, 508, 628
BtsI GCAGTG 1 cut(s) 589
BtsIMutI CAGTG 1 cut(s) 589
CfoI GCGC 1 cut(s) 152
Cfr13I GGNCC 1 cut(s) 230
CviAII CATG 2 cut(s) 328, 619
DdeI CTNAG 3 cut(s) 55, 188, 252
EaeI YGGCCR 2 cut(s) 203, 615
Eam1104I CTCTTC 2 cut(s) 99, 327
EarI CTCTTC 2 cut(s) 99, 327
Ecl136II GAGCTC 2 cut(s) 176, 256
Eco130I CCWWGG 1 cut(s) 618
Eco24I GRGCYC 2 cut(s) 178, 258
Eco31I GGTCTC 1 cut(s) 101
Eco47I GGWCC 1 cut(s) 230
Eco47III AGCGCT 1 cut(s) 151
Eco53kI GAGCTC 2 cut(s) 176, 256
Eco57I CTGAAG 1 cut(s) 312
EcoICRI GAGCTC 2 cut(s) 176, 256
EcoRII CCWGG 2 cut(s) 367, 612
EcoT14I CCWWGG 1 cut(s) 618
EcoT38I GRGCYC 2 cut(s) 178, 258
ErhI CCWWGG 1 cut(s) 618
FaeI CATG 2 cut(s) 331, 622
FaiI YATR 8 cut(s) 117, 228, 317, 329, 375, 434, 563, 620
FatI CATG 2 cut(s) 327, 618
FauI CCCGC 1 cut(s) 114
FokI GGATG 4 cut(s) 149, 450, 515, 635
FriOI GRGCYC 2 cut(s) 178, 258
FspBI CTAG 1 cut(s) 276
GlaI GCGC 1 cut(s) 151
HaeII RGCGCY 1 cut(s) 153
HaeIII GGCC 2 cut(s) 205, 617
HhaI GCGC 1 cut(s) 152
Hin1I GRCGYC 1 cut(s) 566
Hin1II CATG 2 cut(s) 331, 622
Hin6I GCGC 1 cut(s) 150
HinP1I GCGC 1 cut(s) 150
HinfI GANTC 3 cut(s) 53, 193, 296
HphI GGTGA 3 cut(s) 316, 410, 676
Hpy188I TCNGA 3 cut(s) 21, 253, 292
Hpy188III TCNNGA 3 cut(s) 97, 134, 544
Hpy99I CGWCG 1 cut(s) 174
HpyAV CCTTC 2 cut(s) 383, 451
HpyCH4III ACNGT 1 cut(s) 422
HpyCH4IV ACGT 1 cut(s) 566
HpyCH4V TGCA 1 cut(s) 639
HpyF10VI GCNNNNNNNGC 2 cut(s) 149, 285
HpyF3I CTNAG 3 cut(s) 55, 188, 252
HpySE526I ACGT 1 cut(s) 566
Hsp92I GRCGYC 1 cut(s) 566
Hsp92II CATG 2 cut(s) 331, 622
HspAI GCGC 1 cut(s) 150
LguI GCTCTTC 1 cut(s) 327
LpnPI CCDG 8 cut(s) 119, 222, 226, 354, 381, 386, 599, 626
LweI GCATC 1 cut(s) 474
MaeI CTAG 1 cut(s) 276
MaeII ACGT 1 cut(s) 566
MaeIII GTNAC 4 cut(s) 380, 416, 641, 664
MboII GAAGA 5 cut(s) 116, 305, 344, 519, 638
MhlI GDGCHC 3 cut(s) 178, 258, 339
MlsI TGGCCA 1 cut(s) 617
MluCI AATT 5 cut(s) 24, 471, 531, 651, 674
MluNI TGGCCA 1 cut(s) 617
MlyI GAGTC 1 cut(s) 47
MmeI TCCRAC 3 cut(s) 163, 223, 556
MnlI CCTC 7 cut(s) 55, 101, 104, 122, 183, 300, 493
Mox20I TGGCCA 1 cut(s) 617
MroXI GAANNNNTTC 1 cut(s) 411
MscI TGGCCA 1 cut(s) 617
MseI TTAA 2 cut(s) 453, 654
MslI CAYNNNNRTG 1 cut(s) 434
Msp20I TGGCCA 1 cut(s) 617
MspA1I CMGCKG 1 cut(s) 400
MspR9I CCNGG 2 cut(s) 369, 614
MvaI CCWGG 2 cut(s) 369, 614
MwoI GCNNNNNNNGC 2 cut(s) 149, 285
NcoI CCATGG 1 cut(s) 618
NlaIII CATG 2 cut(s) 331, 622
NmuCI GTSAC 2 cut(s) 416, 664
OliI CACNNNNGTG 1 cut(s) 434
PciSI GCTCTTC 1 cut(s) 327
PcsI WCGNNNNNNNCGW 1 cut(s) 175
PdmI GAANNNNTTC 1 cut(s) 411
PfeI GAWTC 2 cut(s) 193, 296
PleI GAGTC 1 cut(s) 47
PpsI GAGTC 1 cut(s) 47
Psp124BI GAGCTC 2 cut(s) 178, 258
Psp6I CCWGG 2 cut(s) 367, 612
PspGI CCWGG 2 cut(s) 367, 612
PspPI GGNCC 1 cut(s) 230
PvuII CAGCTG 1 cut(s) 400
RseI CAYNNNNRTG 1 cut(s) 434
SacI GAGCTC 2 cut(s) 178, 258
SapI GCTCTTC 1 cut(s) 327
SaqAI TTAA 2 cut(s) 453, 654
Sau96I GGNCC 1 cut(s) 230
SchI GAGTC 1 cut(s) 47
ScrFI CCNGG 2 cut(s) 369, 614
SduI GDGCHC 3 cut(s) 178, 258, 339
SetI ASST 9 cut(s) 166, 178, 241, 258, 281, 354, 402, 569, 615
SfaNI GCATC 1 cut(s) 474
SinI GGWCC 1 cut(s) 230
SmiMI CAYNNNNRTG 1 cut(s) 434
SmlI CTYRAG 2 cut(s) 95, 497
SmoI CTYRAG 2 cut(s) 95, 497
Sse9I AATT 5 cut(s) 24, 471, 531, 651, 674
SsiI CCGC 2 cut(s) 121, 393
SspMI CTAG 1 cut(s) 276
SstI GAGCTC 2 cut(s) 178, 258
StyD4I CCNGG 2 cut(s) 367, 612
StyI CCWWGG 1 cut(s) 618
TaaI ACNGT 1 cut(s) 422
TaiI ACGT 1 cut(s) 569
TaqI TCGA 1 cut(s) 172
TasI AATT 5 cut(s) 24, 471, 531, 651, 674
TfiI GAWTC 2 cut(s) 193, 296
Tru1I TTAA 2 cut(s) 453, 654
Tru9I TTAA 2 cut(s) 453, 654
TscAI CASTG 1 cut(s) 589
TseFI GTSAC 2 cut(s) 416, 664
Tsp45I GTSAC 2 cut(s) 416, 664
TspDTI ATGAA 7 cut(s) 17, 26, 93, 153, 208, 316, 639
TspRI CASTG 1 cut(s) 589
VpaK11BI GGWCC 1 cut(s) 230
XapI RAATTY 2 cut(s) 24, 471
XmnI GAANNNNTTC 1 cut(s) 411
XspI CTAG 1 cut(s) 276
ZraI GACGTC 1 cut(s) 567
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.