Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8256943.1

Orthogroup ID

OG0021286

Physical Location & Seq

Genomic Coordinates Forward (+)

178 .. 724

Gene Structure 547 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8256943.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 348 bp

atggtacgactggacatgagtgaatatatggagcggcactctgtcagcaaattaatagggtcacctccaggctatgttggctttggagagggaggcactctaacagaagctatcagaagacgaccttttacagtagttgtgcttgatgaaatcgagaaggcccatccagatatattcaacatccttctccaaatctttgaagatggccaccttactgattctcagggacgaagagtatcgtttaagaatgctttggtagtgatgacatctaatgtgggttccactatcattgcaaagggtcgaaaaagctccattggttttgtgcttacagacgatgagtcaagatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0008150 GO:0009266 GO:0009408 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009628 GO:0009941 GO:0009987 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022607 GO:0031967 GO:0031975 GO:0033554 GO:0034214 GO:0034605 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046983 GO:0047484 GO:0048518 GO:0048583 GO:0048584 GO:0050789 GO:0050896 GO:0051259 GO:0051716 GO:0065003 GO:0065007 GO:0071840 GO:0080134 GO:1901000 GO:1901002 GO:1902584 GO:2000070

KEGG Pathways

Metabolic & Signaling

ko01100 map01100

Pfam Domains

Protein Families

AAA AAA_2 ClpB_D2-small Clp_N

Protein Analysis

115

Amino Acids

12.74

Weight (kDa)

6.28

Isoelectric Point (pI)

63.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0021286)

Species	Orthologous Gene IDs
pyrus_communis	pycom15g03560
rosa_chinensis	RchiOBHm_Chr1g0330741 RchiOBHm_Chr7g0224361
rosa_multiflora	Rmu_co8256943.1_g000001
rosa_samantha	Rh7DG366900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	34
AciI	CCGC	1 cut(s)	34
AcoI	YGGCCR	1 cut(s)	205
AfaI	GTAC	1 cut(s)	6
AgsI	TTSAA	2 cut(s)	178, 200
AhdI	GACNNNNNGTC	1 cut(s)	337
AjnI	CCWGG	1 cut(s)	67
AluBI	AGCT	2 cut(s)	110, 309
AluI	AGCT	2 cut(s)	110, 309
AoxI	GGCC	2 cut(s)	159, 205
AseI	ATTAAT	1 cut(s)	53
AspS9I	GGNCC	1 cut(s)	160
AsuHPI	GGTGA	1 cut(s)	54
BalI	TGGCCA	1 cut(s)	207
BbsI	GAAGAC	1 cut(s)	124
BccI	CCATC	2 cut(s)	171, 197
BciT130I	CCWGG	1 cut(s)	69
BisI	GCNGC	1 cut(s)	35
BlsI	GCNGC	1 cut(s)	36
Bme1390I	CCNGG	1 cut(s)	69
BmeRI	GACNNNNNGTC	1 cut(s)	337
BmgT120I	GGNCC	1 cut(s)	160
BmiI	GGNNCC	1 cut(s)	280
BmrFI	CCNGG	1 cut(s)	69
BpiI	GAAGAC	1 cut(s)	124
BplI	GAGNNNNNCTC	2 cut(s)	23, 55
BpmI	CTGGAG	1 cut(s)	51
Bse1I	ACTGG	1 cut(s)	15
Bse3DI	GCAATG	1 cut(s)	288
BseBI	CCWGG	1 cut(s)	69
BseGI	GGATG	2 cut(s)	163, 180
BseMI	GCAATG	1 cut(s)	288
BseMII	CTCAG	1 cut(s)	236
BseNI	ACTGG	1 cut(s)	15
BshFI	GGCC	2 cut(s)	161, 207
BslFI	GGGAC	1 cut(s)	240
BsmFI	GGGAC	1 cut(s)	240
BsmI	GAATGC	1 cut(s)	253
BsnI	GGCC	2 cut(s)	161, 207
BspACI	CCGC	1 cut(s)	34
BspANI	GGCC	2 cut(s)	161, 207
BspCNI	CTCAG	1 cut(s)	235
BspLI	GGNNCC	1 cut(s)	280
BsrBI	CCGCTC	1 cut(s)	34
BsrDI	GCAATG	1 cut(s)	288
BsrI	ACTGG	1 cut(s)	15
Bst2UI	CCWGG	1 cut(s)	69
Bst4CI	ACNGT	1 cut(s)	133
Bst6I	CTCTTC	1 cut(s)	226
BstDEI	CTNAG	1 cut(s)	222
BstEII	GGTNACC	1 cut(s)	60
BstF5I	GGATG	2 cut(s)	163, 180
BstMWI	GCNNNNNNNGC	1 cut(s)	78
BstNI	CCWGG	1 cut(s)	69
BstPI	GGTNACC	1 cut(s)	60
BstSCI	CCNGG	1 cut(s)	67
BstV2I	GAAGAC	1 cut(s)	124
BsuRI	GGCC	2 cut(s)	161, 207
BtsCI	GGATG	2 cut(s)	163, 180
Cfr13I	GGNCC	1 cut(s)	160
Csp6I	GTAC	1 cut(s)	5
CspCI	CAANNNNNGTGG	2 cut(s)	271, 306
CviAII	CATG	1 cut(s)	16
CviJI	RGCY	6 cut(s)	72, 81, 110, 161, 207, 309
CviKI_1	RGCY	6 cut(s)	72, 81, 110, 161, 207, 309
CviQI	GTAC	1 cut(s)	5
DdeI	CTNAG	1 cut(s)	222
DriI	GACNNNNNGTC	1 cut(s)	337
EaeI	YGGCCR	1 cut(s)	205
Eam1104I	CTCTTC	1 cut(s)	226
Eam1105I	GACNNNNNGTC	1 cut(s)	337
EarI	CTCTTC	1 cut(s)	226
Eco91I	GGTNACC	1 cut(s)	60
EcoO65I	GGTNACC	1 cut(s)	60
EcoRII	CCWGG	1 cut(s)	67
FaeI	CATG	1 cut(s)	19
FaiI	YATR	5 cut(s)	17, 27, 29, 75, 173
FalI	AAGNNNNNCTT	2 cut(s)	109, 141
FaqI	GGGAC	1 cut(s)	240
FatI	CATG	1 cut(s)	15
Fnu4HI	GCNGC	1 cut(s)	35
FokI	GGATG	2 cut(s)	150, 167
Fsp4HI	GCNGC	1 cut(s)	35
GluI	GCNGC	1 cut(s)	35
GsuI	CTGGAG	1 cut(s)	51
HaeIII	GGCC	2 cut(s)	161, 207
Hin1II	CATG	1 cut(s)	19
HinfI	GANTC	2 cut(s)	218, 338
HphI	GGTGA	1 cut(s)	54
Hpy188I	TCNGA	1 cut(s)	116
Hpy188III	TCNNGA	3 cut(s)	154, 167, 342
HpyAV	CCTTC	2 cut(s)	151, 194
HpyCH4III	ACNGT	1 cut(s)	133
HpyCH4V	TGCA	1 cut(s)	293
HpyF10VI	GCNNNNNNNGC	1 cut(s)	78
HpyF3I	CTNAG	1 cut(s)	222
Hsp92II	CATG	1 cut(s)	19
LmnI	GCTCC	2 cut(s)	31, 314
LpnPI	CCDG	4 cut(s)	54, 81, 180, 209
MaeIII	GTNAC	1 cut(s)	60
MbiI	CCGCTC	1 cut(s)	34
MboII	GAAGA	3 cut(s)	129, 212, 243
MlsI	TGGCCA	1 cut(s)	207
MluCI	AATT	1 cut(s)	50
MluNI	TGGCCA	1 cut(s)	207
MlyI	GAGTC	1 cut(s)	347
MnlI	CCTC	3 cut(s)	75, 82, 86
Mox20I	TGGCCA	1 cut(s)	207
MscI	TGGCCA	1 cut(s)	207
MseI	TTAA	2 cut(s)	53, 243
Msp20I	TGGCCA	1 cut(s)	207
MspR9I	CCNGG	1 cut(s)	69
Mva1269I	GAATGC	1 cut(s)	253
MvaI	CCWGG	1 cut(s)	69
MwoI	GCNNNNNNNGC	1 cut(s)	78
NlaIII	CATG	1 cut(s)	19
NlaIV	GGNNCC	1 cut(s)	280
NmuCI	GTSAC	1 cut(s)	60
PctI	GAATGC	1 cut(s)	253
PfeI	GAWTC	1 cut(s)	218
PkrI	GCNGC	1 cut(s)	36
PleI	GAGTC	1 cut(s)	346
PpsI	GAGTC	1 cut(s)	346
PshBI	ATTAAT	1 cut(s)	53
Psp6I	CCWGG	1 cut(s)	67
PspEI	GGTNACC	1 cut(s)	60
PspGI	CCWGG	1 cut(s)	67
PspN4I	GGNNCC	1 cut(s)	280
PspPI	GGNCC	1 cut(s)	160
RsaI	GTAC	1 cut(s)	6
RsaNI	GTAC	1 cut(s)	5
SaqAI	TTAA	2 cut(s)	53, 243
SatI	GCNGC	1 cut(s)	35
Sau96I	GGNCC	1 cut(s)	160
SchI	GAGTC	1 cut(s)	347
ScrFI	CCNGG	1 cut(s)	69
SetI	ASST	5 cut(s)	67, 112, 127, 213, 311
SgeI	CNNG	8 cut(s)	23, 28, 80, 81, 155, 166, 179, 236
Sse9I	AATT	1 cut(s)	50
SsiI	CCGC	1 cut(s)	34
StyD4I	CCNGG	1 cut(s)	67
TaaI	ACNGT	1 cut(s)	133
TaqI	TCGA	2 cut(s)	153, 301
TasI	AATT	1 cut(s)	50
TauI	GCSGC	1 cut(s)	37
TfiI	GAWTC	1 cut(s)	218
Tru1I	TTAA	2 cut(s)	53, 243
Tru9I	TTAA	2 cut(s)	53, 243
TseFI	GTSAC	1 cut(s)	60
Tsp45I	GTSAC	1 cut(s)	60
TspDTI	ATGAA	1 cut(s)	162
VspI	ATTAAT	1 cut(s)	53

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.