pycom15g04660

breast cancer carboxy-terminal domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0006642
Physical Location & Seq
Forward (+)
2762198 .. 2764155
1958 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1098 bp
ATGCGTTTGGATGAGTTGAATAGGCTCGTTGGGTTTAGTGGCACCGAAAATTCTTGTCTACCTATTGGTGTTCGTGGAGTCAAGCAATTGGACACAAATGACGAACCACATGTATCTTTTCGTGGAAGGGAGGCTATCAGAAGTACTGACTCTAGTCACTCTACTTTGTCCGGTCACTCCATTTATGTCGACTTAGACATTTCATCTGAACTGAGGAATAAGGTTACCGAAGCTGCTAGTAGAGAGGGTGCCACATTTGTAGATCAATGGTTTGTTGGTTGCAAAGCCAGTCATGTAGTGTGTGAAGGGTCTTCAAGCCGTAAATATCTTGGCCACTCTAGCAATATTGTTACAGTGAGTCCTGCAAGGCATTCTCTGGGAACTGATGAGGGAAAAGTCCCCGAAGATGTTCAAGCTTATAGAAATAAAGCAAGCCATGGAAAGAGGCTACAGATTGTGAATTCTGCTAAAACTGGGGTTAGAAATCGTCGTGGTCTTCGTATGCAGACTTGCCAAACTCCAATGCGACCAATAACCCCCAGCAGCCTTTTGGATTCAATCTGCTGGTCAATCTCTGAACCAACATCAACGGCTTCAATCTACACCGAGAGTGTAAGTGTTGAAGATGGTAGTGAACATCATGCATCTGTATTCTTCGATGCAAAAGGTGATGGCAAGGATTCAGAAGCGTCGTTTGCAAACTTAACCAGACCGCTCAAGGAAAGTGAGAAATCTGAATTGATATTCAAAAACCATTTTCTTACTATCATGTTCCCTGTCGATCGATTTGCTGAGATGGGGCCATCTTCTAGAACATTTTTCAGCGACAACGGGTTTACATGCTTGCAAGTGTTGGATCATATCTATAAATTTTATCAGGAGAACATGTCAGCCCATGAAATTGAGGCTGCAATCCACACCGACTCAAGGCATGCTGATCGGCTCCGATCAGTGTACTCCAGTAAAGAAACAGCAGAACGCGGGTTTGCAGTTCTCAGGCGGATTGAGTTTCTAGGCAGTCGTAAAAGTTTTGAAATGTTGAAGCGCGTCAACGGAGACAACAACAGCAATGTGTATGAGCTGTTAATTAGAGCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PTCB-BRCT

Protein Analysis

366

Amino Acids

40.74

Weight (kDa)

6.93

Isoelectric Point (pI)

47.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF6699 PF20415 275 - 349 1.4e-06 Family of unknown function (DUF6699)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 41, 248
AccBSI CCGCTC 1 cut(s) 715
AccI GTMKAC 2 cut(s) 58, 189
AccII CGCG 2 cut(s) 981, 1047
AciI CCGC 3 cut(s) 713, 981, 1000
AclWI GGATC 1 cut(s) 864
AcoI YGGCCR 1 cut(s) 331
AcsI RAATTY 3 cut(s) 49, 460, 869
AfaI GTAC 2 cut(s) 145, 956
AfiI CCNNNNNNNGG 1 cut(s) 927
AflIII ACRYGT 2 cut(s) 109, 885
AgsI TTSAA 9 cut(s) 19, 315, 413, 558, 597, 623, 748, 1034, 1042
AluBI AGCT 3 cut(s) 233, 416, 1081
AluI AGCT 3 cut(s) 233, 416, 1081
Alw26I GTCTC 1 cut(s) 1050
AlwI GGATC 1 cut(s) 864
AoxI GGCC 2 cut(s) 331, 800
ApeKI GCWGC 3 cut(s) 233, 543, 908
ApoI RAATTY 3 cut(s) 49, 460, 869
Asp700I GAANNNNTTC 1 cut(s) 408
AspLEI GCGC 1 cut(s) 1047
AspS9I GGNCC 1 cut(s) 800
AsuHPI GGTGA 1 cut(s) 680
BalI TGGCCA 1 cut(s) 333
BanI GGYRCC 2 cut(s) 41, 248
BbsI GAAGAC 2 cut(s) 303, 488
BbvI GCAGC 3 cut(s) 220, 555, 895
BccI CCATC 4 cut(s) 620, 665, 790, 811
BceAI ACGGC 2 cut(s) 303, 606
BcgI CGANNNNNNTGC 4 cut(s) 770, 804, 920, 954
BcoDI GTCTC 1 cut(s) 1050
BfaI CTAG 5 cut(s) 153, 237, 339, 810, 1013
BfmI CTRYAG 1 cut(s) 449
BisI GCNGC 3 cut(s) 234, 544, 909
BlsI GCNGC 3 cut(s) 235, 545, 910
BmcAI AGTACT 1 cut(s) 145
BmgT120I GGNCC 1 cut(s) 800
BmiI GGNNCC 4 cut(s) 43, 250, 801, 944
BmrI ACTGGG 1 cut(s) 483
BmsI GCATC 2 cut(s) 649, 653
BmuI ACTGGG 1 cut(s) 483
BoxI GACNNNNGTC 1 cut(s) 153
BpiI GAAGAC 2 cut(s) 303, 488
BpmI CTGGAG 1 cut(s) 943
BpuEI CTTGAG 2 cut(s) 701, 910
Bsa29I ATCGAT 1 cut(s) 784
BsaJI CCNNGG 1 cut(s) 436
BsaWI WCCGGW 1 cut(s) 170
BsaXI ACNNNNNCTCC 2 cut(s) 872, 902
Bsc4I CCNNNNNNNGG 1 cut(s) 927
Bse1I ACTGG 3 cut(s) 288, 478, 960
Bse3DI GCAATG 1 cut(s) 1075
BseCI ATCGAT 1 cut(s) 784
BseDI CCNNGG 1 cut(s) 436
BseGI GGATG 1 cut(s) 16
BseLI CCNNNNNNNGG 1 cut(s) 927
BseMI GCAATG 1 cut(s) 1075
BseMII CTCAG 3 cut(s) 203, 783, 1009
BseNI ACTGG 3 cut(s) 288, 478, 960
BseXI GCAGC 3 cut(s) 220, 555, 895
BseYI CCCAGC 1 cut(s) 539
Bsh1236I CGCG 2 cut(s) 981, 1047
Bsh1285I CGRYCG 1 cut(s) 784
BshFI GGCC 2 cut(s) 333, 802
BshNI GGYRCC 2 cut(s) 41, 248
BshVI ATCGAT 1 cut(s) 784
BsiEI CGRYCG 1 cut(s) 784
BsiSI CCGG 1 cut(s) 171
BslFI GGGAC 1 cut(s) 383
BslI CCNNNNNNNGG 1 cut(s) 927
BsmAI GTCTC 1 cut(s) 1050
BsmFI GGGAC 1 cut(s) 383
BsmI GAATGC 1 cut(s) 370
BsnI GGCC 2 cut(s) 333, 802
Bsp143I GATC 5 cut(s) 262, 781, 856, 937, 947
Bsp19I CCATGG 1 cut(s) 436
BspACI CCGC 3 cut(s) 713, 981, 1000
BspANI GGCC 2 cut(s) 333, 802
BspCNI CTCAG 3 cut(s) 204, 784, 1008
BspDI ATCGAT 1 cut(s) 784
BspFNI CGCG 2 cut(s) 981, 1047
BspLI GGNNCC 4 cut(s) 43, 250, 801, 944
BspPI GGATC 1 cut(s) 864
BspT107I GGYRCC 2 cut(s) 41, 248
BsrBI CCGCTC 1 cut(s) 715
BsrDI GCAATG 1 cut(s) 1075
BsrI ACTGG 3 cut(s) 288, 478, 960
BssECI CCNNGG 1 cut(s) 436
BssMI GATC 5 cut(s) 262, 781, 856, 937, 947
BssT1I CCWWGG 1 cut(s) 436
Bst4CI ACNGT 1 cut(s) 355
BstC8I GCNNGC 3 cut(s) 433, 845, 933
BstDEI CTNAG 4 cut(s) 193, 212, 792, 995
BstDSI CCRYGG 1 cut(s) 436
BstEII GGTNACC 1 cut(s) 223
BstF5I GGATG 1 cut(s) 16
BstFNI CGCG 2 cut(s) 981, 1047
BstHHI GCGC 1 cut(s) 1047
BstKTI GATC 5 cut(s) 265, 784, 859, 940, 950
BstMAI GTCTC 1 cut(s) 1050
BstMBI GATC 5 cut(s) 262, 781, 856, 937, 947
BstMCI CGRYCG 1 cut(s) 784
BstMWI GCNNNNNNNGC 2 cut(s) 339, 695
BstNSI RCATGY 4 cut(s) 113, 843, 889, 935
BstPAI GACNNNNGTC 1 cut(s) 153
BstPI GGTNACC 1 cut(s) 223
BstSFI CTRYAG 1 cut(s) 449
BstUI CGCG 2 cut(s) 981, 1047
BstV1I GCAGC 3 cut(s) 220, 555, 895
BstV2I GAAGAC 2 cut(s) 303, 488
Bsu15I ATCGAT 1 cut(s) 784
BsuRI GGCC 2 cut(s) 333, 802
BsuTUI ATCGAT 1 cut(s) 784
BtgI CCRYGG 1 cut(s) 436
BtsCI GGATG 1 cut(s) 16
BtsIMutI CAGTG 2 cut(s) 360, 957
Cac8I GCNNGC 3 cut(s) 433, 845, 933
CfoI GCGC 1 cut(s) 1047
Cfr13I GGNCC 1 cut(s) 800
ClaI ATCGAT 1 cut(s) 784
CseI GACGC 2 cut(s) 678, 1036
Csp6I GTAC 2 cut(s) 144, 955
CviAII CATG 9 cut(s) 110, 293, 437, 641, 769, 840, 886, 896, 932
CviQI GTAC 2 cut(s) 144, 955
DdeI CTNAG 4 cut(s) 193, 212, 792, 995
DpnI GATC 5 cut(s) 264, 783, 858, 939, 949
DpnII GATC 5 cut(s) 262, 781, 856, 937, 947
EaeI YGGCCR 1 cut(s) 331
EciI GGCGGA 1 cut(s) 1015
Eco130I CCWWGG 1 cut(s) 436
Eco91I GGTNACC 1 cut(s) 223
EcoO65I GGTNACC 1 cut(s) 223
EcoRI GAATTC 1 cut(s) 460
EcoT14I CCWWGG 1 cut(s) 436
EcoT22I ATGCAT 1 cut(s) 646
ErhI CCWWGG 1 cut(s) 436
FaeI CATG 9 cut(s) 113, 296, 440, 644, 772, 843, 889, 899, 935
FaqI GGGAC 1 cut(s) 383
FatI CATG 9 cut(s) 109, 292, 436, 640, 768, 839, 885, 895, 931
FauI CCCGC 1 cut(s) 974
FblI GTMKAC 2 cut(s) 58, 189
Fnu4HI GCNGC 3 cut(s) 234, 544, 909
FokI GGATG 1 cut(s) 23
Fsp4HI GCNGC 3 cut(s) 234, 544, 909
FspBI CTAG 5 cut(s) 153, 237, 339, 810, 1013
GlaI GCGC 1 cut(s) 1046
GluI GCNGC 3 cut(s) 234, 544, 909
GsaI CCCAGC 1 cut(s) 543
GsuI CTGGAG 1 cut(s) 943
HaeIII GGCC 2 cut(s) 333, 802
HapII CCGG 1 cut(s) 171
HgaI GACGC 2 cut(s) 678, 1036
HhaI GCGC 1 cut(s) 1047
Hin1II CATG 9 cut(s) 113, 296, 440, 644, 772, 843, 889, 899, 935
Hin6I GCGC 1 cut(s) 1045
HinP1I GCGC 1 cut(s) 1045
HincII GTYRAC 2 cut(s) 190, 1051
HindII GTYRAC 2 cut(s) 190, 1051
HindIII AAGCTT 1 cut(s) 414
HinfI GANTC 6 cut(s) 78, 149, 358, 554, 680, 923
HpaII CCGG 1 cut(s) 171
HphI GGTGA 1 cut(s) 680
Hpy166II GTNNAC 6 cut(s) 59, 190, 635, 837, 955, 1051
Hpy188I TCNGA 6 cut(s) 140, 208, 577, 685, 736, 947
Hpy188III TCNNGA 2 cut(s) 810, 878
Hpy8I GTNNAC 6 cut(s) 59, 190, 635, 837, 955, 1051
Hpy99I CGWCG 2 cut(s) 492, 694
HpyAV CCTTC 2 cut(s) 120, 299
HpyCH4III ACNGT 1 cut(s) 355
HpyCH4V TGCA 9 cut(s) 282, 365, 505, 644, 662, 698, 847, 911, 989
HpyF10VI GCNNNNNNNGC 2 cut(s) 339, 695
HpyF3I CTNAG 4 cut(s) 193, 212, 792, 995
Hsp92II CATG 9 cut(s) 113, 296, 440, 644, 772, 843, 889, 899, 935
HspAI GCGC 1 cut(s) 1045
Kzo9I GATC 5 cut(s) 262, 781, 856, 937, 947
LmnI GCTCC 1 cut(s) 948
Lsp1109I GCAGC 3 cut(s) 220, 555, 895
LweI GCATC 2 cut(s) 649, 653
MaeI CTAG 5 cut(s) 153, 237, 339, 810, 1013
MaeIII GTNAC 4 cut(s) 155, 173, 223, 349
MalI GATC 5 cut(s) 264, 783, 858, 939, 949
MbiI CCGCTC 1 cut(s) 715
MboI GATC 5 cut(s) 262, 781, 856, 937, 947
MboII GAAGA 6 cut(s) 303, 416, 488, 635, 646, 798
MfeI CAATTG 1 cut(s) 86
MlsI TGGCCA 1 cut(s) 333
MluCI AATT 7 cut(s) 49, 86, 460, 737, 869, 900, 1086
MluNI TGGCCA 1 cut(s) 333
MlyI GAGTC 4 cut(s) 87, 143, 367, 917
MmeI TCCRAC 1 cut(s) 834
MnlI CCTC 6 cut(s) 124, 207, 238, 382, 438, 898
Mox20I TGGCCA 1 cut(s) 333
Mph1103I ATGCAT 1 cut(s) 646
MroXI GAANNNNTTC 1 cut(s) 408
MscI TGGCCA 1 cut(s) 333
MseI TTAA 2 cut(s) 704, 1085
Msp20I TGGCCA 1 cut(s) 333
MspI CCGG 1 cut(s) 171
MunI CAATTG 1 cut(s) 86
Mva1269I GAATGC 1 cut(s) 370
MvnI CGCG 2 cut(s) 981, 1047
MwoI GCNNNNNNNGC 2 cut(s) 339, 695
NcoI CCATGG 1 cut(s) 436
NdeII GATC 5 cut(s) 262, 781, 856, 937, 947
NlaIII CATG 9 cut(s) 113, 296, 440, 644, 772, 843, 889, 899, 935
NlaIV GGNNCC 4 cut(s) 43, 250, 801, 944
NmuCI GTSAC 2 cut(s) 155, 173
NsiI ATGCAT 1 cut(s) 646
NspI RCATGY 4 cut(s) 113, 843, 889, 935
PaeI GCATGC 1 cut(s) 935
PciI ACATGT 2 cut(s) 109, 885
PcsI WCGNNNNNNNCGW 1 cut(s) 496
PctI GAATGC 1 cut(s) 370
PdmI GAANNNNTTC 1 cut(s) 408
PfeI GAWTC 2 cut(s) 554, 680
PkrI GCNGC 3 cut(s) 235, 545, 910
Ple19I CGATCG 1 cut(s) 784
PleI GAGTC 4 cut(s) 86, 143, 366, 917
PpsI GAGTC 4 cut(s) 86, 143, 366, 917
PscI ACATGT 2 cut(s) 109, 885
PshAI GACNNNNGTC 1 cut(s) 153
PspEI GGTNACC 1 cut(s) 223
PspFI CCCAGC 1 cut(s) 539
PspN4I GGNNCC 4 cut(s) 43, 250, 801, 944
PspPI GGNCC 1 cut(s) 800
PvuI CGATCG 1 cut(s) 784
RsaI GTAC 2 cut(s) 145, 956
RsaNI GTAC 2 cut(s) 144, 955
SalI GTCGAC 1 cut(s) 188
SaqAI TTAA 2 cut(s) 704, 1085
SatI GCNGC 3 cut(s) 234, 544, 909
Sau3AI GATC 5 cut(s) 262, 781, 856, 937, 947
Sau96I GGNCC 1 cut(s) 800
ScaI AGTACT 1 cut(s) 145
SchI GAGTC 4 cut(s) 87, 143, 367, 917
SetI ASST 6 cut(s) 64, 225, 235, 418, 670, 1083
SfaNI GCATC 2 cut(s) 649, 653
SfcI CTRYAG 1 cut(s) 449
SmlI CTYRAG 2 cut(s) 716, 925
SmoI CTYRAG 2 cut(s) 716, 925
SphI GCATGC 1 cut(s) 935
Sse9I AATT 7 cut(s) 49, 86, 460, 737, 869, 900, 1086
SsiI CCGC 3 cut(s) 713, 981, 1000
SspI AATATT 1 cut(s) 346
SspMI CTAG 5 cut(s) 153, 237, 339, 810, 1013
StyI CCWWGG 1 cut(s) 436
TaaI ACNGT 1 cut(s) 355
TaqI TCGA 4 cut(s) 189, 657, 780, 784
TasI AATT 7 cut(s) 49, 86, 460, 737, 869, 900, 1086
TatI WGTACW 2 cut(s) 143, 954
TfiI GAWTC 2 cut(s) 554, 680
Tru1I TTAA 2 cut(s) 704, 1085
Tru9I TTAA 2 cut(s) 704, 1085
TscAI CASTG 2 cut(s) 360, 957
TseFI GTSAC 2 cut(s) 155, 173
TseI GCWGC 3 cut(s) 233, 543, 908
Tsp45I GTSAC 2 cut(s) 155, 173
TspDTI ATGAA 2 cut(s) 192, 912
TspGWI ACGGA 1 cut(s) 1068
TspRI CASTG 2 cut(s) 360, 957
XapI RAATTY 3 cut(s) 49, 460, 869
XbaI TCTAGA 1 cut(s) 809
XceI RCATGY 4 cut(s) 113, 843, 889, 935
XcmI CCANNNNNNNNNTGG 1 cut(s) 547
XmiI GTMKAC 2 cut(s) 58, 189
XmnI GAANNNNTTC 1 cut(s) 408
XspI CTAG 5 cut(s) 153, 237, 339, 810, 1013
ZrmI AGTACT 1 cut(s) 145
Zsp2I ATGCAT 1 cut(s) 646
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.