pycom15g09770

Exocyst complex component

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0012363
Physical Location & Seq
Forward (+)
6370953 .. 6372182
1230 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1230 bp
ATGCAGAGTGAGGAGGAAAAGGCCAACCTCGATGGAGGGCTTCTGGAGGCTGCTCTGGAAAAATTAGAAAATGAGTTCAGGAGGCTCCTCACAGAACATAGCGTGCCACTTCCAATGTCATCACCTTCATCTCTTGGAGAACAAGCATGCATTGCGCCATCACCGTTACCTGTTCTGGTAATCCAAAAGTTGCAAGCTATACTTGGAAGATTGATTGCTAATAACAGACTTGAGAAGTGTATATCTATTTATGTTGAAGTTCGAAGTTCGAATGTAAGGGCAAGTTTACAAGCTCTCAATTTGGATTACCTTGAGATATCAATTGCAGAGTTTAATGATGTGCAGAGCATAGAGGGATATATATCACAGTGGGGAAAGCATTTGGAGTTTGCGGTGAAACACTTGTTTGAGGCGGAGTATAAGTTGTGTAATGATGTTTTTGAGAGGATTGGATTGGGTGTGTGGATGGGTTGCTTTGCAAAGATAGCTGCTCAGGCTGGTATTCTTGCATTCCTACAAATTGATAAGACTGTTACAGAGAGCAAAAAAGATCCGATAAAGCTTTTGAAGTTGTTGGACATATTTGCATCTTTAAACAAATTGAGACTGGACTTCAACCGGCTTTTTGGTGGACCAGCATGTCTTGAAATCCAAATCCTGACAATCGATCTCATTAAGAGTGTCATTGATGGAGCAGCTGAAATTTTCTGGGAGCTTCTTCTTCAGGTGAAACTGCAAAGGCAGAACCCGCCTCCTCAAGATGGGAGTGTTCCGAAATTGGTCAGTTTTATTACGGATTATTGTAATAAACTGCTTGGGGATGATTATAAGCCAATCTTAACTCAGGTTCTCATCATTTATCGAAGTTGGAAGCATGAGAAATTCCAAGAAGGGCTCCTTATAAATGAGGTTTTAGAAATTGTTAAAGCCATTGAGCTAAATTTGGAGGCGTGGATAAAGGCTTATGAGGATACCAGCTTGGCCAACCTTTTTGCAATGAACAACCATTGGCATTTGTACAAGCACCTGAAGGGAACTAAACTGGGGGTTCTGCTGGGGGATGCTTGGTTACGAGAACATGAACAGTACAAAGACTATTATTCCACAGTTTTCTTGAGAGATAGTTGGGGGAAACTTCCGGGTCATTTAAGTAGAGAAGGTCTGATTCTGTTCTCAGGTGGTCGTGCCACTGCCCGTGATCGATCTTATCTTTGTCAAGAAGAGGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0006810 GO:0006887 GO:0008150 GO:0009987 GO:0016192 GO:0032940 GO:0046903 GO:0051179 GO:0051234
KEGG Pathways
Metabolic & Signaling
ko04910 map04910
Pfam Domains
Protein Families
Exo70

Protein Analysis

410

Amino Acids

46.4

Weight (kDa)

5.71

Isoelectric Point (pI)

44.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Exo70_C PF03081 122 - 395 1.2e-66 Exo70 exocyst complex subunit C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0012363)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G31540
fragaria_vesca FvH4_2g36720 FvH4_2g36720
malus_domestica MD08G1127600.v1.1 MD15G1106900.v1.1
prunus_persica Prupe.1G459300_v2.0.a1
pyrus_communis pycom08g10620 pycom08g10630 pycom15g09770
rosa_chinensis RchiOBHm_Chr6g0305081
rosa_laevigata RLG00000010920
rosa_multiflora Rmu_sc0000061.1_g000027
rosa_roxburghii Rroxscaffold_7G00163160
rosa_rugosa Rorug06G0337200
rosa_samantha Rh6AG449000 Rh6BG452100 Rh6CG462700 Rh6DG449400
rosa_wichuraiana Rw6G039110

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 828, 902
AasI GACNNNNNNGTC 1 cut(s) 639
AciI CCGC 3 cut(s) 392, 413, 749
AclWI GGATC 1 cut(s) 545
AcoI YGGCCR 1 cut(s) 981
AcsI RAATTY 3 cut(s) 702, 881, 940
AcuI CTGAAG 2 cut(s) 707, 1049
AfaI GTAC 2 cut(s) 1019, 1088
AfiI CCNNNNNNNGG 1 cut(s) 761
AgsI TTSAA 4 cut(s) 257, 568, 616, 647
AluBI AGCT 8 cut(s) 197, 293, 488, 562, 698, 715, 937, 978
AluI AGCT 8 cut(s) 197, 293, 488, 562, 698, 715, 937, 978
Alw26I GTCTC 1 cut(s) 598
AlwI GGATC 1 cut(s) 545
AoxI GGCC 2 cut(s) 21, 981
ApeKI GCWGC 3 cut(s) 50, 488, 695
ApoI RAATTY 3 cut(s) 702, 881, 940
AspLEI GCGC 1 cut(s) 157
AspS9I GGNCC 1 cut(s) 632
AsuC2I CCSGG 1 cut(s) 1140
AsuHPI GGTGA 4 cut(s) 114, 153, 406, 739
AsuII TTCGAA 2 cut(s) 262, 269
AvaII GGWCC 1 cut(s) 632
BalI TGGCCA 1 cut(s) 983
BanII GRGCYC 1 cut(s) 897
BbvI GCAGC 3 cut(s) 37, 475, 707
BccI CCATC 5 cut(s) 26, 166, 460, 683, 755
BciVI GTATCC 1 cut(s) 964
BcnI CCSGG 1 cut(s) 1140
BcoDI GTCTC 1 cut(s) 598
BfuI GTATCC 1 cut(s) 964
BisI GCNGC 3 cut(s) 51, 489, 696
BlsI GCNGC 3 cut(s) 52, 490, 697
Bme1390I CCNGG 1 cut(s) 1140
Bme18I GGWCC 1 cut(s) 632
BmgT120I GGNCC 1 cut(s) 632
BmiI GGNNCC 2 cut(s) 86, 896
BmrFI CCNGG 1 cut(s) 1140
BmrI ACTGGG 1 cut(s) 1052
BmsI GCATC 2 cut(s) 596, 1051
BmuI ACTGGG 1 cut(s) 1052
BpmI CTGGAG 1 cut(s) 65
Bpu10I CCTNAGC 1 cut(s) 492
Bpu14I TTCGAA 2 cut(s) 262, 269
BpuEI CTTGAG 4 cut(s) 251, 332, 741, 1135
BpuMI CCSGG 1 cut(s) 1140
Bsa29I ATCGAT 2 cut(s) 666, 1201
BsaBI GATNNNNATC 1 cut(s) 361
BsaXI ACNNNNNCTCC 2 cut(s) 407, 437
Bsc4I CCNNNNNNNGG 1 cut(s) 761
Bse118I RCCGGY 1 cut(s) 618
Bse1I ACTGG 2 cut(s) 612, 1047
Bse3DI GCAATG 2 cut(s) 150, 1002
Bse8I GATNNNNATC 1 cut(s) 361
BseCI ATCGAT 2 cut(s) 666, 1201
BseGI GGATG 3 cut(s) 471, 826, 1066
BseJI GATNNNNATC 1 cut(s) 361
BseLI CCNNNNNNNGG 1 cut(s) 761
BseMI GCAATG 2 cut(s) 150, 1002
BseMII CTCAG 3 cut(s) 506, 857, 1188
BseNI ACTGG 2 cut(s) 612, 1047
BseRI GAGGAG 3 cut(s) 26, 77, 744
BseXI GCAGC 3 cut(s) 37, 475, 707
BseYI CCCAGC 1 cut(s) 1054
BsgI GTGCAG 1 cut(s) 362
BshFI GGCC 2 cut(s) 23, 983
BshVI ATCGAT 2 cut(s) 666, 1201
BsiSI CCGG 2 cut(s) 619, 1139
BslI CCNNNNNNNGG 1 cut(s) 761
BsmAI GTCTC 1 cut(s) 598
BsmI GAATGC 1 cut(s) 509
BsnI GGCC 2 cut(s) 23, 983
Bsp119I TTCGAA 2 cut(s) 262, 269
Bsp1286I GDGCHC 1 cut(s) 897
Bsp1407I TGTACA 1 cut(s) 1017
Bsp143I GATC 4 cut(s) 550, 667, 1198, 1202
BspACI CCGC 3 cut(s) 392, 413, 749
BspANI GGCC 2 cut(s) 23, 983
BspCNI CTCAG 3 cut(s) 505, 856, 1187
BspDI ATCGAT 2 cut(s) 666, 1201
BspLI GGNNCC 2 cut(s) 86, 896
BspPI GGATC 1 cut(s) 545
BspT104I TTCGAA 2 cut(s) 262, 269
BsrDI GCAATG 2 cut(s) 150, 1002
BsrFI RCCGGY 1 cut(s) 618
BsrGI TGTACA 1 cut(s) 1017
BsrI ACTGG 2 cut(s) 612, 1047
BssAI RCCGGY 1 cut(s) 618
BssMI GATC 4 cut(s) 550, 667, 1198, 1202
Bst4CI ACNGT 5 cut(s) 165, 369, 532, 1086, 1108
Bst6I CTCTTC 1 cut(s) 1215
BstAPI GCANNNNNTGC 1 cut(s) 152
BstAUI TGTACA 1 cut(s) 1017
BstBI TTCGAA 2 cut(s) 262, 269
BstC8I GCNNGC 3 cut(s) 104, 148, 195
BstDEI CTNAG 3 cut(s) 492, 843, 1174
BstF5I GGATG 3 cut(s) 471, 826, 1066
BstHHI GCGC 1 cut(s) 157
BstKTI GATC 4 cut(s) 553, 670, 1201, 1205
BstMAI GTCTC 1 cut(s) 598
BstMBI GATC 4 cut(s) 550, 667, 1198, 1202
BstMWI GCNNNNNNNGC 4 cut(s) 152, 485, 494, 748
BstNSI RCATGY 2 cut(s) 150, 642
BstSCI CCNGG 1 cut(s) 1138
BstV1I GCAGC 3 cut(s) 37, 475, 707
BstX2I RGATCY 1 cut(s) 550
BstYI RGATCY 1 cut(s) 550
Bsu15I ATCGAT 2 cut(s) 666, 1201
BsuI GTATCC 1 cut(s) 964
BsuRI GGCC 2 cut(s) 23, 983
BsuTUI ATCGAT 2 cut(s) 666, 1201
BtsCI GGATG 3 cut(s) 471, 826, 1066
BtsI GCAGTG 1 cut(s) 1188
BtsIMutI CAGTG 2 cut(s) 374, 1188
Cac8I GCNNGC 3 cut(s) 104, 148, 195
CfoI GCGC 1 cut(s) 157
Cfr10I RCCGGY 1 cut(s) 618
Cfr13I GGNCC 1 cut(s) 632
ClaI ATCGAT 2 cut(s) 666, 1201
Csp6I GTAC 2 cut(s) 1018, 1087
CviAII CATG 4 cut(s) 147, 639, 875, 1079
CviQI GTAC 2 cut(s) 1018, 1087
DdeI CTNAG 3 cut(s) 492, 843, 1174
DpnI GATC 4 cut(s) 552, 669, 1200, 1204
DpnII GATC 4 cut(s) 550, 667, 1198, 1202
DraI TTTAAA 1 cut(s) 594
DrdI GACNNNNNNGTC 1 cut(s) 639
DseDI GACNNNNNNGTC 1 cut(s) 639
EaeI YGGCCR 1 cut(s) 981
Eam1104I CTCTTC 1 cut(s) 1215
EarI CTCTTC 1 cut(s) 1215
EciI GGCGGA 1 cut(s) 428
Eco24I GRGCYC 1 cut(s) 897
Eco32I GATATC 1 cut(s) 318
Eco47I GGWCC 1 cut(s) 632
Eco57I CTGAAG 2 cut(s) 707, 1049
EcoRV GATATC 1 cut(s) 318
EcoT22I ATGCAT 1 cut(s) 152
EcoT38I GRGCYC 1 cut(s) 897
FaeI CATG 4 cut(s) 150, 642, 878, 1082
FalI AAGNNNNNCTT 6 cut(s) 186, 218, 821, 853, 882, 914
FatI CATG 4 cut(s) 146, 638, 874, 1078
FauI CCCGC 1 cut(s) 756
Fnu4HI GCNGC 3 cut(s) 51, 489, 696
FokI GGATG 3 cut(s) 478, 833, 1073
FriOI GRGCYC 1 cut(s) 897
Fsp4HI GCNGC 3 cut(s) 51, 489, 696
GlaI GCGC 1 cut(s) 156
GluI GCNGC 3 cut(s) 51, 489, 696
GsaI CCCAGC 1 cut(s) 1058
GsuI CTGGAG 1 cut(s) 65
HaeIII GGCC 2 cut(s) 23, 983
HapII CCGG 2 cut(s) 619, 1139
HhaI GCGC 1 cut(s) 157
Hin1II CATG 4 cut(s) 150, 642, 878, 1082
Hin6I GCGC 1 cut(s) 155
HinP1I GCGC 1 cut(s) 155
HindIII AAGCTT 1 cut(s) 560
HinfI GANTC 1 cut(s) 1165
HpaII CCGG 2 cut(s) 619, 1139
HphI GGTGA 4 cut(s) 114, 153, 406, 739
Hpy166II GTNNAC 2 cut(s) 287, 632
Hpy188I TCNGA 3 cut(s) 555, 774, 1164
Hpy188III TCNNGA 8 cut(s) 44, 56, 79, 644, 658, 758, 1114, 1217
Hpy8I GTNNAC 2 cut(s) 287, 632
HpyAV CCTTC 4 cut(s) 135, 884, 1024, 1151
HpyCH4III ACNGT 5 cut(s) 165, 369, 532, 1086, 1108
HpyF10VI GCNNNNNNNGC 4 cut(s) 152, 485, 494, 748
HpyF3I CTNAG 3 cut(s) 492, 843, 1174
Hsp92II CATG 4 cut(s) 150, 642, 878, 1082
HspAI GCGC 1 cut(s) 155
Kzo9I GATC 4 cut(s) 550, 667, 1198, 1202
LmnI GCTCC 4 cut(s) 90, 692, 712, 900
Lsp1109I GCAGC 3 cut(s) 37, 475, 707
LweI GCATC 2 cut(s) 596, 1051
MaeIII GTNAC 3 cut(s) 165, 532, 1068
MalI GATC 4 cut(s) 552, 669, 1200, 1204
MboI GATC 4 cut(s) 550, 667, 1198, 1202
MboII GAAGA 3 cut(s) 219, 710, 713
MfeI CAATTG 1 cut(s) 321
MflI RGATCY 1 cut(s) 550
MhlI GDGCHC 1 cut(s) 897
MlsI TGGCCA 1 cut(s) 983
MluNI TGGCCA 1 cut(s) 983
MmeI TCCRAC 2 cut(s) 555, 848
Mox20I TGGCCA 1 cut(s) 983
Mph1103I ATGCAT 1 cut(s) 152
MscI TGGCCA 1 cut(s) 983
MseI TTAA 7 cut(s) 333, 593, 675, 839, 924, 1148, 1228
Msp20I TGGCCA 1 cut(s) 983
MspA1I CMGCKG 1 cut(s) 698
MspI CCGG 2 cut(s) 619, 1139
MspR9I CCNGG 1 cut(s) 1140
MunI CAATTG 1 cut(s) 321
Mva1269I GAATGC 1 cut(s) 509
MwoI GCNNNNNNNGC 4 cut(s) 152, 485, 494, 748
NciI CCSGG 1 cut(s) 1140
NdeII GATC 4 cut(s) 550, 667, 1198, 1202
NlaIII CATG 4 cut(s) 150, 642, 878, 1082
NlaIV GGNNCC 2 cut(s) 86, 896
NsiI ATGCAT 1 cut(s) 152
NspI RCATGY 2 cut(s) 150, 642
NspV TTCGAA 2 cut(s) 262, 269
PaeI GCATGC 1 cut(s) 150
PctI GAATGC 1 cut(s) 509
PfeI GAWTC 1 cut(s) 1165
PkrI GCNGC 3 cut(s) 52, 490, 697
PsiI TTATAA 2 cut(s) 828, 902
PspFI CCCAGC 1 cut(s) 1054
PspN4I GGNNCC 2 cut(s) 86, 896
PspPI GGNCC 1 cut(s) 632
PsuI RGATCY 1 cut(s) 550
PvuII CAGCTG 1 cut(s) 698
RsaI GTAC 2 cut(s) 1019, 1088
RsaNI GTAC 2 cut(s) 1018, 1087
SaqAI TTAA 7 cut(s) 333, 593, 675, 839, 924, 1148, 1228
SatI GCNGC 3 cut(s) 51, 489, 696
Sau3AI GATC 4 cut(s) 550, 667, 1198, 1202
Sau96I GGNCC 1 cut(s) 632
ScrFI CCNGG 1 cut(s) 1140
SduI GDGCHC 1 cut(s) 897
SfaNI GCATC 2 cut(s) 596, 1051
SfuI TTCGAA 2 cut(s) 262, 269
SinI GGWCC 1 cut(s) 632
SmlI CTYRAG 4 cut(s) 230, 311, 756, 1114
SmoI CTYRAG 4 cut(s) 230, 311, 756, 1114
SphI GCATGC 1 cut(s) 150
SsiI CCGC 3 cut(s) 392, 413, 749
StyD4I CCNGG 1 cut(s) 1138
TaaI ACNGT 5 cut(s) 165, 369, 532, 1086, 1108
TaqI TCGA 6 cut(s) 30, 262, 269, 666, 862, 1201
TatI WGTACW 2 cut(s) 1017, 1086
TfiI GAWTC 1 cut(s) 1165
Tru1I TTAA 7 cut(s) 333, 593, 675, 839, 924, 1148, 1228
Tru9I TTAA 7 cut(s) 333, 593, 675, 839, 924, 1148, 1228
TscAI CASTG 2 cut(s) 374, 1195
TseI GCWGC 3 cut(s) 50, 488, 695
TspDTI ATGAA 3 cut(s) 117, 1013, 1095
TspGWI ACGGA 1 cut(s) 809
TspRI CASTG 2 cut(s) 374, 1195
VpaK11BI GGWCC 1 cut(s) 632
XapI RAATTY 3 cut(s) 702, 881, 940
XceI RCATGY 2 cut(s) 150, 642
Zsp2I ATGCAT 1 cut(s) 152
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.