pycom15g11220

alpha/beta hydrolase fold

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0017993
Physical Location & Seq
Reverse (-)
7576512 .. 7577444
933 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 933 bp
ATGTCCATTGTTGAAGAAGCACCGGACTTTCTTCAAGTTTTTTCCGATGGATCTGTAAAACGCTTTTCACCCGGGGTGGCATCTGCCTCACCAGAATCAACCGACGGATTCAAGTCCAAGGATGTGATTATTGACTCATCGAAACCCATTACGGGAAGGATTTTCCTTCCTGGTAATCCAACATCTTCGAAGAAGCTTCCGGTTGTGGTTAATTTTCACGGTGGTGGCTTCTGCATTGGCTCAACCACATGGCTTGGCTACCATCATTTCTTAGGAGGCTTAGCTGTTGCATCCCAATCCATTGTTGTGTCCGTTGACTATCGTTTAGCTCCAGAGAACCGGCTCCCCGTAGCTTATGAAGACTGCTATTACACGTTCGATTGGCTTAGTCGCCAAGCAAGCTCTGAACCATGGCTAGACAAAGCTGATCTCTCTCGGGTTTTTCTCACCGGGGACAGCGCTGGAGGGAACATAACTCACAATGTTGCTGTGAAAGCCATTTGCAATCGAATCGGTCATGTCAAAATAAGGGGATTATTGTTGGTACATCCTTATTTTGGGAGTGAAAAGAGAACCGAGAAAGAGATGGCTGAAGAGGGAGCAAAGGATGTGACGAGCAATGACATGTTTTGGCGACTAAGCATACCTAAAGGCTCCAACCGAGACTATTTCGGATGTAACTTTGAAAAGACCGGACTGTCTGCAACCGAATGGAGCGATGAGTTCCCTGCTGTGGTTGTTTATGTGGCTGGCTTGGATTTTTTGAAAGAGAGGGGAGTGATGTATGCAGATTTTCTGCAGAAAAAAGGAGTTAAAGAAGTGAAGCTGGTGGAGGCGGAGAACGAGTCTCATGTGTTTCATGTCTTCCATCCAGATTCAGAGGGGGCCGGTTTGCTTCAGAGAAATATGGGTGAATTCATCAGGAGCCATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Abhydrolase_3

Protein Analysis

311

Amino Acids

34.25

Weight (kDa)

5.94

Isoelectric Point (pI)

38.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
COesterase PF00135 54 - 110 7.5e-07 Carboxylesterase family
BD-FAE PF20434 60 - 165 3.6e-12 BD-FAE
Abhydrolase_3 PF07859 69 - 287 3.6e-51 alpha/beta hydrolase fold
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017993)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g29190
malus_domestica MD15G1124600.v1.1
prunus_persica Prupe.1G480100_v2.0.a1
pyrus_communis pycom15g11220
rosa_chinensis RchiOBHm_Chr6g0298051
rosa_laevigata RLG00000011540
rosa_multiflora Rmu_sc0002800.1_g000016
rosa_rugosa Rorug06G0278200
rosa_samantha Rh6AG388700 Rh6CG402900
rosa_wichuraiana Rw6G033930

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 697
AciI CCGC 1 cut(s) 836
AclWI GGATC 1 cut(s) 58
AcsI RAATTY 1 cut(s) 914
AcuI CTGAAG 2 cut(s) 612, 881
AfaI GTAC 1 cut(s) 546
AfeI AGCGCT 1 cut(s) 460
AfiI CCNNNNNNNGG 3 cut(s) 152, 557, 733
AflIII ACRYGT 2 cut(s) 372, 624
AgsI TTSAA 5 cut(s) 14, 35, 112, 686, 766
AjnI CCWGG 1 cut(s) 169
AleI CACNNNNGTG 1 cut(s) 222
AluBI AGCT 7 cut(s) 196, 284, 329, 353, 402, 425, 826
AluI AGCT 7 cut(s) 196, 284, 329, 353, 402, 425, 826
Alw26I GTCTC 2 cut(s) 657, 852
AlwI GGATC 1 cut(s) 58
Ama87I CYCGRG 2 cut(s) 71, 435
Aor51HI AGCGCT 1 cut(s) 460
AoxI GGCC 1 cut(s) 885
ApoI RAATTY 1 cut(s) 914
AspLEI GCGC 1 cut(s) 461
AspS9I GGNCC 1 cut(s) 885
AsuC2I CCSGG 3 cut(s) 72, 73, 451
AsuHPI GGTGA 4 cut(s) 60, 81, 439, 923
AsuII TTCGAA 1 cut(s) 188
AvaI CYCGRG 2 cut(s) 71, 435
BbsI GAAGAC 2 cut(s) 366, 856
BccI CCATC 4 cut(s) 41, 270, 580, 876
BcgI CGANNNNNNTGC 2 cut(s) 493, 527
BciT130I CCWGG 1 cut(s) 171
BcnI CCSGG 3 cut(s) 72, 73, 451
BcoDI GTCTC 2 cut(s) 657, 852
BfaI CTAG 1 cut(s) 416
BfmI CTRYAG 1 cut(s) 797
BfoI RGCGCY 1 cut(s) 462
BlpI GCTNAGC 1 cut(s) 280
Bme1390I CCNGG 4 cut(s) 72, 73, 171, 451
BmeT110I CYCGRG 2 cut(s) 71, 435
BmgT120I GGNCC 1 cut(s) 885
BmiI GGNNCC 4 cut(s) 344, 655, 886, 926
BmrFI CCNGG 4 cut(s) 72, 73, 171, 451
BmsI GCATC 2 cut(s) 89, 299
BpiI GAAGAC 2 cut(s) 366, 856
BpmI CTGGAG 2 cut(s) 315, 483
Bpu1102I GCTNAGC 1 cut(s) 280
Bpu14I TTCGAA 1 cut(s) 188
BpuMI CCSGG 3 cut(s) 72, 73, 451
BsaJI CCNNGG 5 cut(s) 71, 72, 117, 410, 450
BsaWI WCCGGW 3 cut(s) 22, 199, 692
BsaXI ACNNNNNCTCC 2 cut(s) 830, 860
Bsc4I CCNNNNNNNGG 3 cut(s) 152, 557, 733
Bse118I RCCGGY 2 cut(s) 339, 887
Bse3DI GCAATG 1 cut(s) 625
BseBI CCWGG 1 cut(s) 171
BseDI CCNNGG 5 cut(s) 71, 72, 117, 410, 450
BseGI GGATG 6 cut(s) 127, 290, 547, 613, 680, 868
BseLI CCNNNNNNNGG 3 cut(s) 152, 557, 733
BseMI GCAATG 1 cut(s) 625
BshFI GGCC 1 cut(s) 887
BsiHKCI CYCGRG 2 cut(s) 71, 435
BsiSI CCGG 7 cut(s) 23, 72, 200, 340, 450, 693, 888
BslFI GGGAC 1 cut(s) 467
BslI CCNNNNNNNGG 3 cut(s) 152, 557, 733
BsmAI GTCTC 2 cut(s) 657, 852
BsmFI GGGAC 1 cut(s) 467
BsnI GGCC 1 cut(s) 887
BsoBI CYCGRG 2 cut(s) 71, 435
Bsp119I TTCGAA 1 cut(s) 188
Bsp143I GATC 2 cut(s) 50, 427
Bsp1720I GCTNAGC 1 cut(s) 280
Bsp19I CCATGG 1 cut(s) 410
BspACI CCGC 1 cut(s) 836
BspANI GGCC 1 cut(s) 887
BspLI GGNNCC 4 cut(s) 344, 655, 886, 926
BspMAI CTGCAG 1 cut(s) 801
BspPI GGATC 1 cut(s) 58
BspT104I TTCGAA 1 cut(s) 188
BsrDI GCAATG 1 cut(s) 625
BsrFI RCCGGY 2 cut(s) 339, 887
BssAI RCCGGY 2 cut(s) 339, 887
BssECI CCNNGG 5 cut(s) 71, 72, 117, 410, 450
BssMI GATC 2 cut(s) 50, 427
BssT1I CCWWGG 2 cut(s) 117, 410
Bst2UI CCWGG 1 cut(s) 171
Bst4CI ACNGT 2 cut(s) 221, 699
Bst6I CTCTTC 1 cut(s) 588
BstBI TTCGAA 1 cut(s) 188
BstC8I GCNNGC 2 cut(s) 400, 751
BstDEI CTNAG 4 cut(s) 271, 280, 386, 638
BstDSI CCRYGG 1 cut(s) 410
BstF5I GGATG 6 cut(s) 127, 290, 547, 613, 680, 868
BstH2I RGCGCY 1 cut(s) 462
BstHHI GCGC 1 cut(s) 461
BstKTI GATC 2 cut(s) 53, 430
BstMAI GTCTC 2 cut(s) 657, 852
BstMBI GATC 2 cut(s) 50, 427
BstMWI GCNNNNNNNGC 2 cut(s) 399, 494
BstNI CCWGG 1 cut(s) 171
BstNSI RCATGY 1 cut(s) 628
BstSCI CCNGG 4 cut(s) 70, 71, 169, 449
BstSFI CTRYAG 1 cut(s) 797
BstV2I GAAGAC 2 cut(s) 366, 856
BstX2I RGATCY 1 cut(s) 50
BstYI RGATCY 1 cut(s) 50
BsuRI GGCC 1 cut(s) 887
BtgI CCRYGG 1 cut(s) 410
BtgZI GCGATG 1 cut(s) 732
BtsCI GGATG 6 cut(s) 127, 290, 547, 613, 680, 868
Cac8I GCNNGC 2 cut(s) 400, 751
CfoI GCGC 1 cut(s) 461
Cfr10I RCCGGY 2 cut(s) 339, 887
Cfr13I GGNCC 1 cut(s) 885
Cfr9I CCCGGG 1 cut(s) 71
Csp6I GTAC 1 cut(s) 545
CspCI CAANNNNNGTGG 2 cut(s) 235, 270
CviAII CATG 6 cut(s) 249, 411, 518, 625, 851, 860
CviQI GTAC 1 cut(s) 545
DdeI CTNAG 4 cut(s) 271, 280, 386, 638
DpnI GATC 2 cut(s) 52, 429
DpnII GATC 2 cut(s) 50, 427
DrdI GACNNNNNNGTC 1 cut(s) 697
DseDI GACNNNNNNGTC 1 cut(s) 697
Eam1104I CTCTTC 1 cut(s) 588
EarI CTCTTC 1 cut(s) 588
EciI GGCGGA 1 cut(s) 851
Eco130I CCWWGG 2 cut(s) 117, 410
Eco47III AGCGCT 1 cut(s) 460
Eco57I CTGAAG 2 cut(s) 612, 881
Eco88I CYCGRG 2 cut(s) 71, 435
EcoRI GAATTC 1 cut(s) 914
EcoRII CCWGG 1 cut(s) 169
EcoT14I CCWWGG 2 cut(s) 117, 410
ErhI CCWWGG 2 cut(s) 117, 410
FaeI CATG 6 cut(s) 252, 414, 521, 628, 854, 863
FaqI GGGAC 1 cut(s) 467
FatI CATG 6 cut(s) 248, 410, 517, 624, 850, 859
FokI GGATG 6 cut(s) 134, 277, 534, 620, 687, 855
FspBI CTAG 1 cut(s) 416
GlaI GCGC 1 cut(s) 460
GsuI CTGGAG 2 cut(s) 315, 483
HaeII RGCGCY 1 cut(s) 462
HaeIII GGCC 1 cut(s) 887
HapII CCGG 7 cut(s) 23, 72, 200, 340, 450, 693, 888
HhaI GCGC 1 cut(s) 461
Hin1II CATG 6 cut(s) 252, 414, 521, 628, 854, 863
Hin6I GCGC 1 cut(s) 459
HinP1I GCGC 1 cut(s) 459
HincII GTYRAC 1 cut(s) 316
HindII GTYRAC 1 cut(s) 316
HindIII AAGCTT 1 cut(s) 194
HinfI GANTC 6 cut(s) 95, 108, 134, 510, 845, 875
HpaII CCGG 7 cut(s) 23, 72, 200, 340, 450, 693, 888
HphI GGTGA 4 cut(s) 60, 81, 439, 923
Hpy166II GTNNAC 1 cut(s) 316
Hpy188I TCNGA 5 cut(s) 46, 406, 674, 880, 900
Hpy188III TCNNGA 3 cut(s) 332, 872, 922
Hpy8I GTNNAC 1 cut(s) 316
Hpy99I CGWCG 1 cut(s) 107
HpyAV CCTTC 2 cut(s) 150, 176
HpyCH4III ACNGT 2 cut(s) 221, 699
HpyCH4IV ACGT 1 cut(s) 374
HpyCH4V TGCA 6 cut(s) 234, 290, 504, 704, 788, 799
HpyF10VI GCNNNNNNNGC 2 cut(s) 399, 494
HpyF3I CTNAG 4 cut(s) 271, 280, 386, 638
HpySE526I ACGT 1 cut(s) 374
Hsp92II CATG 6 cut(s) 252, 414, 521, 628, 854, 863
HspAI GCGC 1 cut(s) 459
Kzo9I GATC 2 cut(s) 50, 427
LmnI GCTCC 6 cut(s) 334, 348, 599, 659, 714, 924
LweI GCATC 2 cut(s) 89, 299
MaeI CTAG 1 cut(s) 416
MaeII ACGT 1 cut(s) 374
MaeIII GTNAC 2 cut(s) 610, 677
MalI GATC 2 cut(s) 52, 429
MboI GATC 2 cut(s) 50, 427
MboII GAAGA 7 cut(s) 23, 26, 177, 202, 371, 605, 856
MflI RGATCY 1 cut(s) 50
MluCI AATT 2 cut(s) 211, 914
MlyI GAGTC 2 cut(s) 128, 854
MmeI TCCRAC 2 cut(s) 203, 681
MnlI CCTC 7 cut(s) 97, 269, 458, 589, 765, 826, 874
MseI TTAA 2 cut(s) 210, 813
MslI CAYNNNNRTG 2 cut(s) 222, 305
MspI CCGG 7 cut(s) 23, 72, 200, 340, 450, 693, 888
MspR9I CCNGG 4 cut(s) 72, 73, 171, 451
MvaI CCWGG 1 cut(s) 171
MwoI GCNNNNNNNGC 2 cut(s) 399, 494
NciI CCSGG 3 cut(s) 72, 73, 451
NcoI CCATGG 1 cut(s) 410
NdeII GATC 2 cut(s) 50, 427
NlaIII CATG 6 cut(s) 252, 414, 521, 628, 854, 863
NlaIV GGNNCC 4 cut(s) 344, 655, 886, 926
NmuCI GTSAC 1 cut(s) 610
NspI RCATGY 1 cut(s) 628
NspV TTCGAA 1 cut(s) 188
OliI CACNNNNGTG 1 cut(s) 222
PciI ACATGT 1 cut(s) 624
PfeI GAWTC 4 cut(s) 95, 108, 510, 875
PleI GAGTC 2 cut(s) 128, 853
PpsI GAGTC 2 cut(s) 128, 853
PscI ACATGT 1 cut(s) 624
Psp6I CCWGG 1 cut(s) 169
PspGI CCWGG 1 cut(s) 169
PspN4I GGNNCC 4 cut(s) 344, 655, 886, 926
PspPI GGNCC 1 cut(s) 885
PstI CTGCAG 1 cut(s) 801
PsuI RGATCY 1 cut(s) 50
RsaI GTAC 1 cut(s) 546
RsaNI GTAC 1 cut(s) 545
RseI CAYNNNNRTG 2 cut(s) 222, 305
SaqAI TTAA 2 cut(s) 210, 813
Sau3AI GATC 2 cut(s) 50, 427
Sau96I GGNCC 1 cut(s) 885
SchI GAGTC 2 cut(s) 128, 854
ScrFI CCNGG 4 cut(s) 72, 73, 171, 451
SetI ASST 9 cut(s) 198, 286, 331, 355, 377, 404, 427, 649, 828
SfaNI GCATC 2 cut(s) 89, 299
SfcI CTRYAG 1 cut(s) 797
SfuI TTCGAA 1 cut(s) 188
SmaI CCCGGG 1 cut(s) 73
SmiMI CAYNNNNRTG 2 cut(s) 222, 305
Sse9I AATT 2 cut(s) 211, 914
SsiI CCGC 1 cut(s) 836
SspMI CTAG 1 cut(s) 416
StyD4I CCNGG 4 cut(s) 70, 71, 169, 449
StyI CCWWGG 2 cut(s) 117, 410
TaaI ACNGT 2 cut(s) 221, 699
TaiI ACGT 1 cut(s) 377
TaqI TCGA 4 cut(s) 140, 188, 378, 508
TaqII GACCGA 1 cut(s) 503
TasI AATT 2 cut(s) 211, 914
TfiI GAWTC 4 cut(s) 95, 108, 510, 875
Tru1I TTAA 2 cut(s) 210, 813
Tru9I TTAA 2 cut(s) 210, 813
TseFI GTSAC 1 cut(s) 610
Tsp45I GTSAC 1 cut(s) 610
TspDTI ATGAA 3 cut(s) 372, 848, 907
TspGWI ACGGA 2 cut(s) 120, 301
TspMI CCCGGG 1 cut(s) 71
XapI RAATTY 1 cut(s) 914
XceI RCATGY 1 cut(s) 628
XmaI CCCGGG 1 cut(s) 71
XspI CTAG 1 cut(s) 416
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.