pycom15g12310

beta-galactosidase

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
Physical Location & Seq
Reverse (-)
8421604 .. 8427635
6032 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1548 bp
ATGGCAGTTGACCTCCAGACTGGTGCACCATGGGTCATGTGCAAGCAAACCGATGCTCCTGATCCAGTGATTAATACATGCAATGGCATGAAATGTGGGCAAACTTTTGGAGGACCAAACTCACCCAATAAGCCCACTATGTGGACAGAGAATTGGACGTCATTCTATCAAGTGTATGGTGGAGAACCGTACATAAGGTCTGCTGAAGACATTGCATTTCATGTGGCTCTCTTTATAGCTAGAAATGGAAGCTACATCAACTATTACATGTATCACGGTGGAACTAATTTCGGAAGAACAGGCTCGGCATATGTCATAACAAGTTACTATGATCAAGCTCCTCTCGATGAATATGGTTTATTAAGGCAACCCAAGTGGGGTCACCTAAAGGAGTTGCATGCTGCAATTAAAAGTTGCTCTACAACTTTACTAAACGGAACACGAACTAATTTTTCTTTAGGTCAACTTCAACAGGCCTATGTCTTTAGCGAAGAAAGTGCAGGAAGATGTGTTGCATTTTTAATAAATAACGATGAAAAAAGTAACGCTACGGTTCAGTTCAGAAATGCTTCTCATGAGCTGATGCCAAAGTCAGTCGCCATTTTATCTGACTGTGAAAAAGAAATTTTCAATACTGCAAGGGTTAATACAAAGCAAAACAAAAGAATCATAAGATCAACAAAAATATTTGATACAATGGACAAATGGCAAAAGTTCACAGATATCATCCCGAACTTTGAAAATACTTCACTACAATCAGACACATTACTCGAGCATATGAACGTGACAAAAGATGTATCGGATTATCTTTGGTATACTTTGAGTTTTCAACACAACATTTCTTGCGCTGAACCGGTACTTGTTGTAGAGTCTCTCGGACATGTAACACATGCTTTCGTAAACAACATGTATATAGGAAATGGCCATGGCAGTCATGATACGAAGCAATTCGTCATGGAGAAACCAATTGGTTTAAACAACGGCACAAACAATATTTCTTTGCTAAGCGTAATGGTTGGACTTCCGGATTCAGGAGCTTTTCTAGAAAGAAGATTTGCTGGCTTAAGAAGAGTGGAAATTCAATGCAGTAAAAAAGAATTGTACAATTTTACTAATTACGATTGGGGATATCAGGTTGGACTACTTGGAGAGAAAATGCAAATATACAAAGAAGAAAATATGGACAACGTTGAATGGAGTGACGTTGGAGGCTCTTCAAATCAACCACTTACTTGGTACAAGATTGTTTTCGAGCCGCCGGTAGGAAATGATCCAGTCATCTTAAACCTAAGCTCAATGGGGAAGGGTGAAGCTTGGGTTAATGACCAAAGTATTGGTCGTTATTGGGTTTCATTTCTTACTTCTAAAGGAAAACCTTCCCAAACAATGTACCATATTCCTCGATCATTCCTCAAAAACTCTGGAAACCTTTTAGTTTTGCTTGAAGAATATGGTGGAAACCCTCTTCACACTTCCTTAAACACCATTTCACTTTCCACTACGTATGAAACTATTTCTCACAACGAGCTTCGTTACAACAATTACTAA

Protein Analysis

516

Amino Acids

58.2

Weight (kDa)

6.07

Isoelectric Point (pI)

32.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_35 PF01301 2 - 135 1.8e-37 Glycosyl hydrolases family 35
GHD PF17834 158 - 215 7.7e-22 Beta-sandwich domain in beta galactosidase
BetaGal_gal-bd PF21467 410 - 476 1.5e-21 Beta-galactosidase, galactose-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0015872)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G63800
fragaria_vesca FvH4_1g25140 FvH4_1g25140
malus_domestica MD15G1136500.v1.1
prunus_persica Prupe.4G279500_v2.0.a1
pyrus_communis pycom15g12310
rosa_chinensis RchiOBHm_Chr2g0122851
rosa_laevigata RLG00000018718
rosa_roxburghii Rroxscaffold_2G00121120
rosa_rugosa Rorug02G0242700
rosa_samantha Rh2AG301500 Rh2BG309000 Rh2CG287600 Rh2DG325600
rosa_wichuraiana Rw2G023920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 161
AccB7I CCANNNNNTGG 1 cut(s) 141
AccI GTMKAC 1 cut(s) 815
AccIII TCCGGA 1 cut(s) 1024
AciI CCGC 1 cut(s) 1256
AclI AACGTT 1 cut(s) 1188
AclWI GGATC 2 cut(s) 56, 1265
AcoI YGGCCR 1 cut(s) 922
AcsI RAATTY 2 cut(s) 624, 1077
AcuI CTGAAG 1 cut(s) 225
AcyI GRCGYC 1 cut(s) 158
AdeI CACNNNGTG 1 cut(s) 141
AfaI GTAC 5 cut(s) 191, 858, 1103, 1238, 1391
AfiI CCNNNNNNNGG 4 cut(s) 141, 377, 1031, 1262
AflII CTTAAG 1 cut(s) 1063
AflIII ACRYGT 3 cut(s) 267, 880, 906
AgeI ACCGGT 1 cut(s) 853
AgsI TTSAA 8 cut(s) 470, 631, 740, 830, 1082, 1193, 1218, 1445
AluBI AGCT 8 cut(s) 239, 252, 338, 580, 1037, 1293, 1313, 1528
AluI AGCT 8 cut(s) 239, 252, 338, 580, 1037, 1293, 1313, 1528
Alw21I GWGCWC 1 cut(s) 28
Alw26I GTCTC 1 cut(s) 876
Alw44I GTGCAC 1 cut(s) 24
AlwI GGATC 2 cut(s) 56, 1265
Ama87I CYCGRG 1 cut(s) 770
Aor13HI TCCGGA 1 cut(s) 1024
AoxI GGCC 2 cut(s) 474, 922
ApaLI GTGCAC 1 cut(s) 24
ApeKI GCWGC 1 cut(s) 401
ApoI RAATTY 2 cut(s) 624, 1077
ArsI GACNNNNNNTTYG 2 cut(s) 1321, 1353
AseI ATTAAT 1 cut(s) 72
AsiGI ACCGGT 1 cut(s) 853
Asp700I GAANNNNTTC 3 cut(s) 568, 947, 1375
AspLEI GCGC 1 cut(s) 848
AspS9I GGNCC 1 cut(s) 113
AsuHPI GGTGA 3 cut(s) 114, 374, 1319
AvaI CYCGRG 1 cut(s) 770
AvaII GGWCC 1 cut(s) 113
BaeGI GKGCMC 1 cut(s) 28
BalI TGGCCA 1 cut(s) 924
BbsI GAAGAC 1 cut(s) 213
Bbv12I GWGCWC 1 cut(s) 28
BbvI GCAGC 1 cut(s) 388
BceAI ACGGC 1 cut(s) 997
BcgI CGANNNNNNTGC 2 cut(s) 479, 513
BclI TGATCA 1 cut(s) 331
BcoDI GTCTC 1 cut(s) 876
BfaI CTAG 2 cut(s) 240, 1043
BfrI CTTAAG 1 cut(s) 1063
BisI GCNGC 2 cut(s) 402, 1256
BlpI GCTNAGC 1 cut(s) 1004
BlsI GCNGC 2 cut(s) 403, 1257
Bme18I GGWCC 1 cut(s) 113
BmeT110I CYCGRG 1 cut(s) 770
BmgT120I GGNCC 1 cut(s) 113
BmsI GCATC 2 cut(s) 43, 573
BpiI GAAGAC 1 cut(s) 213
Bpu10I CCTNAGC 1 cut(s) 1289
Bpu1102I GCTNAGC 1 cut(s) 1004
BsaAI YACGTR 1 cut(s) 1503
BsaHI GRCGYC 1 cut(s) 158
BsaJI CCNNGG 2 cut(s) 29, 925
BsaWI WCCGGW 2 cut(s) 853, 1024
BsaXI ACNNNNNCTCC 2 cut(s) 40, 70
Bsc4I CCNNNNNNNGG 4 cut(s) 141, 377, 1031, 1262
Bse118I RCCGGY 2 cut(s) 853, 1258
Bse1I ACTGG 3 cut(s) 25, 65, 1274
Bse3DI GCAATG 2 cut(s) 88, 210
BseAI TCCGGA 1 cut(s) 1024
BseDI CCNNGG 2 cut(s) 29, 925
BseGI GGATG 1 cut(s) 726
BseLI CCNNNNNNNGG 4 cut(s) 141, 377, 1031, 1262
BseMI GCAATG 2 cut(s) 88, 210
BseNI ACTGG 3 cut(s) 25, 65, 1274
BseRI GAGGAG 1 cut(s) 330
BseSI GKGCMC 1 cut(s) 28
BseXI GCAGC 1 cut(s) 388
BsgI GTGCAG 1 cut(s) 519
BshFI GGCC 2 cut(s) 476, 924
BshTI ACCGGT 1 cut(s) 853
BsiHKAI GWGCWC 1 cut(s) 28
BsiHKCI CYCGRG 1 cut(s) 770
BsiSI CCGG 3 cut(s) 854, 1025, 1259
BslI CCNNNNNNNGG 4 cut(s) 141, 377, 1031, 1262
BsmAI GTCTC 1 cut(s) 876
BsnI GGCC 2 cut(s) 476, 924
BsoBI CYCGRG 1 cut(s) 770
Bsp1286I GDGCHC 1 cut(s) 28
Bsp13I TCCGGA 1 cut(s) 1024
Bsp1407I TGTACA 1 cut(s) 1101
Bsp143I GATC 5 cut(s) 61, 331, 674, 1270, 1403
Bsp1720I GCTNAGC 1 cut(s) 1004
Bsp19I CCATGG 2 cut(s) 29, 925
BspACI CCGC 1 cut(s) 1256
BspANI GGCC 2 cut(s) 476, 924
BspEI TCCGGA 1 cut(s) 1024
BspHI TCATGA 2 cut(s) 574, 934
BspPI GGATC 2 cut(s) 56, 1265
BspQI GCTCTTC 1 cut(s) 1219
BspTI CTTAAG 1 cut(s) 1063
BsrDI GCAATG 2 cut(s) 88, 210
BsrFI RCCGGY 2 cut(s) 853, 1258
BsrGI TGTACA 1 cut(s) 1101
BsrI ACTGG 3 cut(s) 25, 65, 1274
BssAI RCCGGY 2 cut(s) 853, 1258
BssECI CCNNGG 2 cut(s) 29, 925
BssMI GATC 5 cut(s) 61, 331, 674, 1270, 1403
BssNAI GTATAC 1 cut(s) 816
BssNI GRCGYC 1 cut(s) 158
BssT1I CCWWGG 2 cut(s) 29, 925
Bst1107I GTATAC 1 cut(s) 816
Bst4CI ACNGT 4 cut(s) 189, 278, 553, 614
Bst6I CTCTTC 3 cut(s) 1063, 1219, 1470
BstACI GRCGYC 1 cut(s) 158
BstAFI CTTAAG 1 cut(s) 1063
BstAUI TGTACA 1 cut(s) 1101
BstBAI YACGTR 1 cut(s) 1503
BstC8I GCNNGC 3 cut(s) 44, 399, 1060
BstDEI CTNAG 2 cut(s) 1004, 1289
BstDSI CCRYGG 2 cut(s) 29, 925
BstEII GGTNACC 1 cut(s) 380
BstF5I GGATG 1 cut(s) 726
BstHHI GCGC 1 cut(s) 848
BstKTI GATC 5 cut(s) 64, 334, 677, 1273, 1406
BstMAI GTCTC 1 cut(s) 876
BstMBI GATC 5 cut(s) 61, 331, 674, 1270, 1403
BstNSI RCATGY 6 cut(s) 81, 271, 401, 884, 893, 910
BstPI GGTNACC 1 cut(s) 380
BstSLI GKGCMC 1 cut(s) 28
BstSNI TACGTA 1 cut(s) 1503
BstV1I GCAGC 1 cut(s) 388
BstV2I GAAGAC 1 cut(s) 213
BstXI CCANNNNNNTGG 2 cut(s) 1233, 1334
BstZ17I GTATAC 1 cut(s) 816
BsuRI GGCC 2 cut(s) 476, 924
BtgI CCRYGG 2 cut(s) 29, 925
BtsCI GGATG 1 cut(s) 726
BtsIMutI CAGTG 1 cut(s) 72
Cac8I GCNNGC 3 cut(s) 44, 399, 1060
CciI TCATGA 2 cut(s) 574, 934
CfoI GCGC 1 cut(s) 848
Cfr10I RCCGGY 2 cut(s) 853, 1258
Cfr13I GGNCC 1 cut(s) 113
Csp6I GTAC 5 cut(s) 190, 857, 1102, 1237, 1390
CspAI ACCGGT 1 cut(s) 853
CspCI CAANNNNNGTGG 2 cut(s) 356, 391
CviQI GTAC 5 cut(s) 190, 857, 1102, 1237, 1390
DdeI CTNAG 2 cut(s) 1004, 1289
DpnI GATC 5 cut(s) 63, 333, 676, 1272, 1405
DpnII GATC 5 cut(s) 61, 331, 674, 1270, 1403
DraI TTTAAA 1 cut(s) 975
DraIII CACNNNGTG 1 cut(s) 141
EaeI YGGCCR 1 cut(s) 922
Eam1104I CTCTTC 3 cut(s) 1063, 1219, 1470
EarI CTCTTC 3 cut(s) 1063, 1219, 1470
Eco105I TACGTA 1 cut(s) 1503
Eco130I CCWWGG 2 cut(s) 29, 925
Eco147I AGGCCT 1 cut(s) 476
Eco32I GATATC 2 cut(s) 724, 1130
Eco47I GGWCC 1 cut(s) 113
Eco57I CTGAAG 1 cut(s) 225
Eco88I CYCGRG 1 cut(s) 770
Eco91I GGTNACC 1 cut(s) 380
EcoO65I GGTNACC 1 cut(s) 380
EcoRV GATATC 2 cut(s) 724, 1130
EcoT14I CCWWGG 2 cut(s) 29, 925
ErhI CCWWGG 2 cut(s) 29, 925
FauNDI CATATG 2 cut(s) 310, 777
FbaI TGATCA 1 cut(s) 331
FblI GTMKAC 1 cut(s) 815
Fnu4HI GCNGC 2 cut(s) 402, 1256
FokI GGATG 1 cut(s) 713
Fsp4HI GCNGC 2 cut(s) 402, 1256
FspBI CTAG 2 cut(s) 240, 1043
GlaI GCGC 1 cut(s) 847
GluI GCNGC 2 cut(s) 402, 1256
HaeIII GGCC 2 cut(s) 476, 924
HapII CCGG 3 cut(s) 854, 1025, 1259
HhaI GCGC 1 cut(s) 848
Hin1I GRCGYC 1 cut(s) 158
Hin6I GCGC 1 cut(s) 846
HinP1I GCGC 1 cut(s) 846
HincII GTYRAC 2 cut(s) 10, 464
HindII GTYRAC 2 cut(s) 10, 464
HindIII AAGCTT 1 cut(s) 1311
HinfI GANTC 3 cut(s) 666, 869, 1028
HpaII CCGG 3 cut(s) 854, 1025, 1259
HphI GGTGA 3 cut(s) 114, 374, 1319
Hpy166II GTNNAC 7 cut(s) 10, 26, 144, 464, 717, 816, 901
Hpy188I TCNGA 6 cut(s) 293, 563, 610, 760, 802, 878
Hpy8I GTNNAC 7 cut(s) 10, 26, 144, 464, 717, 816, 901
HpyAV CCTTC 2 cut(s) 1297, 1386
HpyCH4III ACNGT 4 cut(s) 189, 278, 553, 614
HpyCH4IV ACGT 5 cut(s) 158, 783, 1188, 1203, 1502
HpyF3I CTNAG 2 cut(s) 1004, 1289
HpySE526I ACGT 5 cut(s) 158, 783, 1188, 1203, 1502
Hsp92I GRCGYC 1 cut(s) 158
HspAI GCGC 1 cut(s) 846
Kpn2I TCCGGA 1 cut(s) 1024
Ksp22I TGATCA 1 cut(s) 331
Kzo9I GATC 5 cut(s) 61, 331, 674, 1270, 1403
LguI GCTCTTC 1 cut(s) 1219
LmnI GCTCC 3 cut(s) 61, 343, 1034
Lsp1109I GCAGC 1 cut(s) 388
LweI GCATC 2 cut(s) 43, 573
MaeI CTAG 2 cut(s) 240, 1043
MaeII ACGT 5 cut(s) 158, 783, 1188, 1203, 1502
MaeIII GTNAC 7 cut(s) 323, 380, 542, 784, 883, 1199, 1532
MalI GATC 5 cut(s) 63, 333, 676, 1272, 1405
MboI GATC 5 cut(s) 61, 331, 674, 1270, 1403
MfeI CAATTG 1 cut(s) 966
MhlI GDGCHC 1 cut(s) 28
MlsI TGGCCA 1 cut(s) 924
MluNI TGGCCA 1 cut(s) 924
MlyI GAGTC 1 cut(s) 878
MmeI TCCRAC 3 cut(s) 997, 1117, 1186
MnlI CCTC 7 cut(s) 23, 104, 351, 1202, 1410, 1421, 1473
Mox20I TGGCCA 1 cut(s) 924
MroI TCCGGA 1 cut(s) 1024
MroXI GAANNNNTTC 3 cut(s) 568, 947, 1375
MscI TGGCCA 1 cut(s) 924
Msp20I TGGCCA 1 cut(s) 924
MspCI CTTAAG 1 cut(s) 1063
MspI CCGG 3 cut(s) 854, 1025, 1259
MssI GTTTAAAC 1 cut(s) 975
MunI CAATTG 1 cut(s) 966
NcoI CCATGG 2 cut(s) 29, 925
NdeI CATATG 2 cut(s) 310, 777
NdeII GATC 5 cut(s) 61, 331, 674, 1270, 1403
NmeAIII GCCGAG 1 cut(s) 284
NmuCI GTSAC 3 cut(s) 380, 784, 1199
NspI RCATGY 6 cut(s) 81, 271, 401, 884, 893, 910
PaeI GCATGC 1 cut(s) 401
PaeR7I CTCGAG 1 cut(s) 770
PagI TCATGA 2 cut(s) 574, 934
PceI AGGCCT 1 cut(s) 476
PciI ACATGT 3 cut(s) 267, 880, 906
PciSI GCTCTTC 1 cut(s) 1219
PdmI GAANNNNTTC 3 cut(s) 568, 947, 1375
PfeI GAWTC 2 cut(s) 666, 1028
PflMI CCANNNNNTGG 1 cut(s) 141
PinAI ACCGGT 1 cut(s) 853
PkrI GCNGC 2 cut(s) 403, 1257
PleI GAGTC 1 cut(s) 877
PmeI GTTTAAAC 1 cut(s) 975
PpsI GAGTC 1 cut(s) 877
Ppu21I YACGTR 1 cut(s) 1503
PscI ACATGT 3 cut(s) 267, 880, 906
PshBI ATTAAT 1 cut(s) 72
Psp1406I AACGTT 1 cut(s) 1188
PspEI GGTNACC 1 cut(s) 380
PspPI GGNCC 1 cut(s) 113
PspXI VCTCGAGB 1 cut(s) 770
RsaI GTAC 5 cut(s) 191, 858, 1103, 1238, 1391
RsaNI GTAC 5 cut(s) 190, 857, 1102, 1237, 1390
SapI GCTCTTC 1 cut(s) 1219
SatI GCNGC 2 cut(s) 402, 1256
Sau3AI GATC 5 cut(s) 61, 331, 674, 1270, 1403
Sau96I GGNCC 1 cut(s) 113
SchI GAGTC 1 cut(s) 878
SduI GDGCHC 1 cut(s) 28
SfaNI GCATC 2 cut(s) 43, 573
Sfr274I CTCGAG 1 cut(s) 770
SinI GGWCC 1 cut(s) 113
SlaI CTCGAG 1 cut(s) 770
SmlI CTYRAG 2 cut(s) 770, 1063
SmoI CTYRAG 2 cut(s) 770, 1063
SnaBI TACGTA 1 cut(s) 1503
SphI GCATGC 1 cut(s) 401
SseBI AGGCCT 1 cut(s) 476
SsiI CCGC 1 cut(s) 1256
SspI AATATT 2 cut(s) 687, 994
SspMI CTAG 2 cut(s) 240, 1043
StuI AGGCCT 1 cut(s) 476
StyI CCWWGG 2 cut(s) 29, 925
TaaI ACNGT 4 cut(s) 189, 278, 553, 614
TaiI ACGT 5 cut(s) 161, 786, 1191, 1206, 1505
TaqI TCGA 4 cut(s) 345, 771, 1251, 1402
TatI WGTACW 1 cut(s) 1101
TauI GCSGC 1 cut(s) 1258
TfiI GAWTC 2 cut(s) 666, 1028
TscAI CASTG 1 cut(s) 72
TseFI GTSAC 3 cut(s) 380, 784, 1199
TseI GCWGC 1 cut(s) 401
Tsp45I GTSAC 3 cut(s) 380, 784, 1199
TspDTI ATGAA 7 cut(s) 104, 209, 363, 549, 794, 1341, 1521
TspGWI ACGGA 1 cut(s) 450
TspRI CASTG 1 cut(s) 72
Van91I CCANNNNNTGG 1 cut(s) 141
Vha464I CTTAAG 1 cut(s) 1063
VneI GTGCAC 1 cut(s) 24
VpaK11BI GGWCC 1 cut(s) 113
VspI ATTAAT 1 cut(s) 72
XapI RAATTY 2 cut(s) 624, 1077
XbaI TCTAGA 1 cut(s) 1042
XceI RCATGY 6 cut(s) 81, 271, 401, 884, 893, 910
XhoI CTCGAG 1 cut(s) 770
XmiI GTMKAC 1 cut(s) 815
XmnI GAANNNNTTC 3 cut(s) 568, 947, 1375
XspI CTAG 2 cut(s) 240, 1043
ZraI GACGTC 1 cut(s) 159
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.