Rroxscaffold_2G00121120

beta-galactosidase

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
Physical Location & Seq
Forward (+)
53573823 .. 53580203
6381 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00121120.1

Sequence Viewer

Length: 1890 bp
ATGGAATGGCGCTGGCTACAGTTTTGGGTTATGGTGGTGGTGGTTCTGATTACTGATGAAGGGGTTTCTGTCGTTAGTGGAGGAAATGTGACCTACGACGGAAGATCTCTCATCATCGACGGCCAAAGAAAGTTTCTTTTTTCAGGTTCGATTCACTATCCTCGGAGTACACCTGAGATGTGGTCATCTCTGATCGGAAAAGCCAAGGAAGGAGGACTTGATGTGATTCAAACCTATGTGTTTTGGAACCTTCACGAGCCTCAACCGGGTCAGTTTTACATGCAAAATTTTACTACAAAAATAGTGAACTTGATGAAATCAGAGGGGTTATATGCTTCACAAGGAGGTCCAATCATACTCTCGCAGATTGAAAATGAATATCAAAATGTGGAAGCAGCATTCCACGAGAAAGGACCTGCCTACGTTCGGTGGGCTGCAAAAATGGCAGTCGACCTCCAAACTGGTGTGCCATGGGTGATGTGCAAGCAAACTGATGCTCCTGATCCAGTGATCAATACCTGCAATGGAATGCAATGTGGGAAGACTTTTGGAGGACCAAACTCACCTAATAAACCCTCTATGTGGACAGAGAATTGGACCTATCAAGTGTATGGCGGAGAACCATACATAAGATCTGCTGAAAATATTGCATTTCACGTTGCGCTTTTTATAGCTCGGATGAATGGAAGCTATGTAAACTACTACATGTATCATGGTGGAACTAACTTTGGAAGAACAAGCTCTGCATATGTCATAACAGGTTATTATGATCAGGCTCCGCTAGATGAATATGGTCAACTTCAAGAGGCCTATGTCTTTCAAGAAGAAAGTGCTGGAAGATGTGTTGCATTTCTAGTAAATAACGATGAAAAAACTAATGCTACTGTTCAATTTCGAAATATATCATACTACCTGATGCCAATGTCAATCAGCATTCTACCAGACTGTGAAAAGGTGATTTTCAACACTGCAAAGGTGAATACAATCTCTAACCAAAGAATTACAAGATCAGCTCAAATCTTTGATTCAGTGGATAGTTGGGAGGGGTCTAAAGATATCATCCAAAATTTTGAACCTACAATATCTCTACAATCGGATACACTACTTGAGCACATGAACGTGACCAAAGACAAATCTGATTATCTTTGGTATACTATGAGATTTCAGCACAACATTTCTTGCACTGAACCAGTACTTCGTGTAGAGTCTTTCGGACATGTAACACATGCTTTCGTGAATGGCATACATACAGGAAATGCACATGGTAGTCATGATACCAAACAATTCATCATGGAGACTCCAGTTCTGTTAAATGATGGAAGTAACAATATTTCTTTGCTAAGCGTTATGGTTGGACTACCGGACTCGGGTGCTTTTCTTGAAAGCAAATTTGCTGGCTTGAAAAGAGTTGAAATTCACTGCAACGAAACAGATCAATTTTACAATTTTACTAATTATGCATGGGGATACCAGGTTGGGTTACTTGGAGAAAAGTGGCAAATATATAGAGAAGAAAATCTGGACAAAATTGAATGGAACAATATTGAAGGCTATTTTAATCAATCACTGACTTGGTACAAGACATTTTTCGATGCACCTGTGGGAAATGATCCAGTTGCCTTAAACCTTAGCTCAATGGCAAAGGGCGAAGCTTGGATTAATGGACAAAGTATTGGTCGATATTGGGTTTCATTCCTTACTTCGAAAGGCAAACCTTCACAATCGATGTACCACGTTCCTCGATCATTCTTAAAAGATTCTGAAAACCTTTTAGTTTTGCTCGAAGAAGTTGGTGGAAACCCTCTTCACATTTCTTTAGATACTATTTCACTTTCCTCTCTATCTGAAAGTACTTCTTATCATCAAATCCCATCAATAAGTTTAGAGTGA

Protein Analysis

629

Amino Acids

71.16

Weight (kDa)

5.23

Isoelectric Point (pI)

43.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_35 PF01301 36 - 94 8.6e-23 Glycosyl hydrolases family 35
Glyco_hydro_35 PF01301 93 - 272 1.4e-46 Glycosyl hydrolases family 35
GHD PF17834 269 - 326 1.3e-23 Beta-sandwich domain in beta galactosidase
BetaGal_gal-bd PF21467 523 - 589 9.7e-24 Beta-galactosidase, galactose-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0015872)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G63800
fragaria_vesca FvH4_1g25140 FvH4_1g25140
malus_domestica MD15G1136500.v1.1
prunus_persica Prupe.4G279500_v2.0.a1
pyrus_communis pycom15g12310
rosa_chinensis RchiOBHm_Chr2g0122851
rosa_laevigata RLG00000018718
rosa_roxburghii Rroxscaffold_2G00121120
rosa_rugosa Rorug02G0242700
rosa_samantha Rh2AG301500 Rh2BG309000 Rh2CG287600 Rh2DG325600
rosa_wichuraiana Rw2G023920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 424, 527
AccI GTMKAC 2 cut(s) 450, 1151
AciI CCGC 2 cut(s) 615, 779
AclWI GGATC 2 cut(s) 497, 1604
AcoI YGGCCR 1 cut(s) 121
AcsI RAATTY 4 cut(s) 286, 1066, 1388, 1413
AfaI GTAC 5 cut(s) 169, 1194, 1577, 1730, 1852
AfiI CCNNNNNNNGG 4 cut(s) 266, 426, 582, 1367
AflIII ACRYGT 2 cut(s) 705, 1216
AjnI CCWGG 1 cut(s) 1470
AjuI GAANNNNNNNTTGG 2 cut(s) 117, 149
AluBI AGCT 6 cut(s) 674, 690, 741, 1013, 1632, 1652
AluI AGCT 6 cut(s) 674, 690, 741, 1013, 1632, 1652
Alw21I GWGCWC 1 cut(s) 1113
Alw26I GTCTC 1 cut(s) 1289
AlwI GGATC 2 cut(s) 497, 1604
Ama87I CYCGRG 1 cut(s) 1366
AoxI GGCC 2 cut(s) 121, 807
ApeKI GCWGC 2 cut(s) 395, 434
ApoI RAATTY 4 cut(s) 286, 1066, 1388, 1413
ArsI GACNNNNNNTTYG 2 cut(s) 1660, 1692
AseI ATTAAT 1 cut(s) 1659
AspLEI GCGC 2 cut(s) 12, 664
AspS9I GGNCC 4 cut(s) 347, 413, 554, 597
AsuC2I CCSGG 1 cut(s) 267
AsuHPI GGTGA 4 cut(s) 487, 555, 967, 988
AsuII TTCGAA 2 cut(s) 895, 1703
AvaI CYCGRG 1 cut(s) 1366
AvaII GGWCC 4 cut(s) 347, 413, 554, 597
BauI CACGAG 2 cut(s) 254, 404
BbsI GAAGAC 1 cut(s) 548
Bbv12I GWGCWC 1 cut(s) 1113
BbvI GCAGC 2 cut(s) 407, 421
BccI CCATC 2 cut(s) 1310, 1879
BceAI ACGGC 1 cut(s) 136
BciT130I CCWGG 1 cut(s) 1472
BciVI GTATCC 2 cut(s) 1090, 1460
BclI TGATCA 2 cut(s) 510, 769
BcnI CCSGG 1 cut(s) 267
BcoDI GTCTC 1 cut(s) 1289
BfaI CTAG 2 cut(s) 782, 854
BfmI CTRYAG 1 cut(s) 17
BfoI RGCGCY 1 cut(s) 13
BfuAI ACCTGC 2 cut(s) 424, 527
BfuI GTATCC 2 cut(s) 1090, 1460
BglII AGATCT 2 cut(s) 104, 632
BisI GCNGC 2 cut(s) 396, 435
BlpI GCTNAGC 1 cut(s) 1340
BlsI GCNGC 2 cut(s) 397, 436
BmcAI AGTACT 2 cut(s) 1194, 1852
Bme1390I CCNGG 2 cut(s) 267, 1472
Bme18I GGWCC 4 cut(s) 347, 413, 554, 597
BmeT110I CYCGRG 1 cut(s) 1366
BmgT120I GGNCC 4 cut(s) 347, 413, 554, 597
BmiI GGNNCC 2 cut(s) 248, 777
BmrFI CCNGG 2 cut(s) 267, 1472
BmsI GCATC 3 cut(s) 484, 906, 1582
BpiI GAAGAC 1 cut(s) 548
BpmI CTGGAG 1 cut(s) 1284
Bpu10I CCTNAGC 1 cut(s) 1628
Bpu1102I GCTNAGC 1 cut(s) 1340
Bpu14I TTCGAA 2 cut(s) 895, 1703
BpuEI CTTGAG 1 cut(s) 1127
BpuMI CCSGG 1 cut(s) 267
Bsa29I ATCGAT 1 cut(s) 1724
BsaJI CCNNGG 3 cut(s) 161, 204, 470
BsaWI WCCGGW 1 cut(s) 1360
BsaXI ACNNNNNCTCC 4 cut(s) 72, 102, 481, 511
Bsc4I CCNNNNNNNGG 4 cut(s) 266, 426, 582, 1367
Bse1I ACTGG 5 cut(s) 466, 506, 1190, 1301, 1613
Bse3DI GCAATG 2 cut(s) 529, 539
BseBI CCWGG 1 cut(s) 1472
BseCI ATCGAT 1 cut(s) 1724
BseDI CCNNGG 3 cut(s) 161, 204, 470
BseGI GGATG 2 cut(s) 684, 1059
BseLI CCNNNNNNNGG 4 cut(s) 266, 426, 582, 1367
BseMI GCAATG 2 cut(s) 529, 539
BseMII CTCAG 1 cut(s) 165
BseNI ACTGG 5 cut(s) 466, 506, 1190, 1301, 1613
BseXI GCAGC 2 cut(s) 407, 421
BshFI GGCC 2 cut(s) 123, 809
BshVI ATCGAT 1 cut(s) 1724
BsiHKAI GWGCWC 1 cut(s) 1113
BsiHKCI CYCGRG 1 cut(s) 1366
BsiSI CCGG 2 cut(s) 266, 1361
BslI CCNNNNNNNGG 4 cut(s) 266, 426, 582, 1367
BsmAI GTCTC 1 cut(s) 1289
BsmI GAATGC 3 cut(s) 398, 534, 933
BsnI GGCC 2 cut(s) 123, 809
BsoBI CYCGRG 1 cut(s) 1366
Bsp119I TTCGAA 2 cut(s) 895, 1703
Bsp1286I GDGCHC 1 cut(s) 1113
Bsp1720I GCTNAGC 1 cut(s) 1340
Bsp19I CCATGG 1 cut(s) 470
BspACI CCGC 2 cut(s) 615, 779
BspANI GGCC 2 cut(s) 123, 809
BspCNI CTCAG 1 cut(s) 166
BspDI ATCGAT 1 cut(s) 1724
BspHI TCATGA 1 cut(s) 1270
BspLI GGNNCC 2 cut(s) 248, 777
BspMI ACCTGC 2 cut(s) 424, 527
BspPI GGATC 2 cut(s) 497, 1604
BspT104I TTCGAA 2 cut(s) 895, 1703
BsrDI GCAATG 2 cut(s) 529, 539
BsrI ACTGG 5 cut(s) 466, 506, 1190, 1301, 1613
BssECI CCNNGG 3 cut(s) 161, 204, 470
BssNAI GTATAC 1 cut(s) 1152
BssSI CACGAG 2 cut(s) 254, 404
BssT1I CCWWGG 2 cut(s) 204, 470
Bst1107I GTATAC 1 cut(s) 1152
Bst2BI CACGAG 2 cut(s) 254, 404
Bst2UI CCWGG 1 cut(s) 1472
Bst4CI ACNGT 3 cut(s) 21, 886, 947
Bst6I CTCTTC 1 cut(s) 1809
BstBI TTCGAA 2 cut(s) 895, 1703
BstC8I GCNNGC 3 cut(s) 14, 485, 1396
BstDEI CTNAG 3 cut(s) 174, 1340, 1628
BstDSI CCRYGG 1 cut(s) 470
BstF5I GGATG 2 cut(s) 684, 1059
BstH2I RGCGCY 1 cut(s) 13
BstHHI GCGC 2 cut(s) 12, 664
BstMAI GTCTC 1 cut(s) 1289
BstMWI GCNNNNNNNGC 1 cut(s) 443
BstNI CCWGG 1 cut(s) 1472
BstNSI RCATGY 4 cut(s) 283, 709, 1220, 1229
BstSCI CCNGG 2 cut(s) 265, 1470
BstSFI CTRYAG 1 cut(s) 17
BstV1I GCAGC 2 cut(s) 407, 421
BstV2I GAAGAC 1 cut(s) 548
BstX2I RGATCY 2 cut(s) 104, 632
BstYI RGATCY 2 cut(s) 104, 632
BstZ17I GTATAC 1 cut(s) 1152
Bsu15I ATCGAT 1 cut(s) 1724
BsuI GTATCC 2 cut(s) 1090, 1460
BsuRI GGCC 2 cut(s) 123, 809
BsuTUI ATCGAT 1 cut(s) 1724
BtgI CCRYGG 1 cut(s) 470
BtsCI GGATG 2 cut(s) 684, 1059
BtsI GCAGTG 2 cut(s) 966, 1417
BtsIMutI CAGTG 6 cut(s) 513, 966, 1035, 1182, 1417, 1565
BveI ACCTGC 2 cut(s) 424, 527
Cac8I GCNNGC 3 cut(s) 14, 485, 1396
CciI TCATGA 1 cut(s) 1270
CfoI GCGC 2 cut(s) 12, 664
Cfr13I GGNCC 4 cut(s) 347, 413, 554, 597
ClaI ATCGAT 1 cut(s) 1724
CsiI ACCWGGT 1 cut(s) 1470
Csp6I GTAC 5 cut(s) 168, 1193, 1576, 1729, 1851
CviQI GTAC 5 cut(s) 168, 1193, 1576, 1729, 1851
DdeI CTNAG 3 cut(s) 174, 1340, 1628
EaeI YGGCCR 1 cut(s) 121
Eam1104I CTCTTC 1 cut(s) 1809
EarI CTCTTC 1 cut(s) 1809
EciI GGCGGA 1 cut(s) 630
Eco130I CCWWGG 2 cut(s) 204, 470
Eco147I AGGCCT 1 cut(s) 809
Eco32I GATATC 1 cut(s) 1057
Eco47I GGWCC 4 cut(s) 347, 413, 554, 597
Eco88I CYCGRG 1 cut(s) 1366
EcoO109I RGGNCCY 1 cut(s) 413
EcoRII CCWGG 1 cut(s) 1470
EcoRV GATATC 1 cut(s) 1057
EcoT14I CCWWGG 2 cut(s) 204, 470
EcoT22I ATGCAT 1 cut(s) 1462
ErhI CCWWGG 2 cut(s) 204, 470
FalI AAGNNNNNCTT 4 cut(s) 201, 233, 1840, 1872
FauNDI CATATG 1 cut(s) 748
FbaI TGATCA 2 cut(s) 510, 769
FblI GTMKAC 2 cut(s) 450, 1151
Fnu4HI GCNGC 2 cut(s) 396, 435
FokI GGATG 2 cut(s) 691, 1046
Fsp4HI GCNGC 2 cut(s) 396, 435
FspBI CTAG 2 cut(s) 782, 854
GlaI GCGC 2 cut(s) 11, 663
GluI GCNGC 2 cut(s) 396, 435
GsuI CTGGAG 1 cut(s) 1284
HaeII RGCGCY 1 cut(s) 13
HaeIII GGCC 2 cut(s) 123, 809
HapII CCGG 2 cut(s) 266, 1361
HhaI GCGC 2 cut(s) 12, 664
Hin6I GCGC 2 cut(s) 10, 662
HinP1I GCGC 2 cut(s) 10, 662
HincII GTYRAC 2 cut(s) 451, 797
HindII GTYRAC 2 cut(s) 451, 797
HindIII AAGCTT 1 cut(s) 1650
HinfI GANTC 7 cut(s) 151, 226, 1025, 1205, 1297, 1364, 1757
HpaII CCGG 2 cut(s) 266, 1361
HphI GGTGA 4 cut(s) 487, 555, 967, 988
Hpy166II GTNNAC 7 cut(s) 170, 307, 451, 585, 697, 797, 1152
Hpy188III TCNNGA 8 cut(s) 254, 500, 803, 821, 1234, 1271, 1379, 1520
Hpy8I GTNNAC 7 cut(s) 170, 307, 451, 585, 697, 797, 1152
Hpy99I CGWCG 2 cut(s) 101, 122
HpyAV CCTTC 5 cut(s) 53, 203, 260, 1541, 1725
HpyCH4III ACNGT 3 cut(s) 21, 886, 947
HpyCH4IV ACGT 4 cut(s) 423, 657, 1119, 1734
HpyF10VI GCNNNNNNNGC 1 cut(s) 443
HpyF3I CTNAG 3 cut(s) 174, 1340, 1628
HpySE526I ACGT 4 cut(s) 423, 657, 1119, 1734
HspAI GCGC 2 cut(s) 10, 662
Ksp22I TGATCA 2 cut(s) 510, 769
LmnI GCTCC 2 cut(s) 502, 781
Lsp1109I GCAGC 2 cut(s) 407, 421
LweI GCATC 3 cut(s) 484, 906, 1582
MabI ACCWGGT 1 cut(s) 1470
MaeI CTAG 2 cut(s) 782, 854
MaeII ACGT 4 cut(s) 423, 657, 1119, 1734
MaeIII GTNAC 5 cut(s) 88, 1120, 1219, 1322, 1479
MboII GAAGA 8 cut(s) 114, 553, 744, 836, 849, 1523, 1796, 1796
MflI RGATCY 2 cut(s) 104, 632
MhlI GDGCHC 1 cut(s) 1113
MlyI GAGTC 3 cut(s) 1214, 1291, 1358
MmeI TCCRAC 1 cut(s) 1333
Mph1103I ATGCAT 1 cut(s) 1462
MseI TTAA 5 cut(s) 1310, 1557, 1622, 1659, 1751
MslI CAYNNNNRTG 1 cut(s) 1118
MspI CCGG 2 cut(s) 266, 1361
MspR9I CCNGG 2 cut(s) 267, 1472
Mva1269I GAATGC 3 cut(s) 398, 534, 933
MvaI CCWGG 1 cut(s) 1472
MwoI GCNNNNNNNGC 1 cut(s) 443
NciI CCSGG 1 cut(s) 267
NcoI CCATGG 1 cut(s) 470
NdeI CATATG 1 cut(s) 748
NlaIV GGNNCC 2 cut(s) 248, 777
NmuCI GTSAC 2 cut(s) 88, 1120
NsiI ATGCAT 1 cut(s) 1462
NspI RCATGY 4 cut(s) 283, 709, 1220, 1229
NspV TTCGAA 2 cut(s) 895, 1703
PagI TCATGA 1 cut(s) 1270
PceI AGGCCT 1 cut(s) 809
PciI ACATGT 2 cut(s) 705, 1216
PctI GAATGC 3 cut(s) 398, 534, 933
PfeI GAWTC 4 cut(s) 151, 226, 1025, 1757
PkrI GCNGC 2 cut(s) 397, 436
PleI GAGTC 3 cut(s) 1213, 1291, 1358
PpsI GAGTC 3 cut(s) 1213, 1291, 1358
PpuMI RGGWCCY 1 cut(s) 413
PscI ACATGT 2 cut(s) 705, 1216
PshBI ATTAAT 1 cut(s) 1659
Psp5II RGGWCCY 1 cut(s) 413
Psp6I CCWGG 1 cut(s) 1470
PspGI CCWGG 1 cut(s) 1470
PspN4I GGNNCC 2 cut(s) 248, 777
PspPI GGNCC 4 cut(s) 347, 413, 554, 597
PspPPI RGGWCCY 1 cut(s) 413
PsuI RGATCY 2 cut(s) 104, 632
RsaI GTAC 5 cut(s) 169, 1194, 1577, 1730, 1852
RsaNI GTAC 5 cut(s) 168, 1193, 1576, 1729, 1851
RseI CAYNNNNRTG 1 cut(s) 1118
SalI GTCGAC 1 cut(s) 449
SaqAI TTAA 5 cut(s) 1310, 1557, 1622, 1659, 1751
SatI GCNGC 2 cut(s) 396, 435
Sau96I GGNCC 4 cut(s) 347, 413, 554, 597
ScaI AGTACT 2 cut(s) 1194, 1852
SchI GAGTC 3 cut(s) 1214, 1291, 1358
ScrFI CCNGG 2 cut(s) 267, 1472
SduI GDGCHC 1 cut(s) 1113
SexAI ACCWGGT 1 cut(s) 1470
SfaNI GCATC 3 cut(s) 484, 906, 1582
SfcI CTRYAG 1 cut(s) 17
SfuI TTCGAA 2 cut(s) 895, 1703
SinI GGWCC 4 cut(s) 347, 413, 554, 597
SmiMI CAYNNNNRTG 1 cut(s) 1118
SmlI CTYRAG 1 cut(s) 1106
SmoI CTYRAG 1 cut(s) 1106
SseBI AGGCCT 1 cut(s) 809
SsiI CCGC 2 cut(s) 615, 779
SspI AATATT 3 cut(s) 646, 1330, 1543
SspMI CTAG 2 cut(s) 782, 854
StuI AGGCCT 1 cut(s) 809
StyD4I CCNGG 2 cut(s) 265, 1470
StyI CCWWGG 2 cut(s) 204, 470
TaaI ACNGT 3 cut(s) 21, 886, 947
TaiI ACGT 4 cut(s) 426, 660, 1122, 1737
TatI WGTACW 3 cut(s) 167, 1192, 1850
TfiI GAWTC 4 cut(s) 151, 226, 1025, 1757
Tru1I TTAA 5 cut(s) 1310, 1557, 1622, 1659, 1751
Tru9I TTAA 5 cut(s) 1310, 1557, 1622, 1659, 1751
TscAI CASTG 6 cut(s) 513, 973, 1035, 1189, 1424, 1572
TseFI GTSAC 2 cut(s) 88, 1120
TseI GCWGC 2 cut(s) 395, 434
Tsp45I GTSAC 2 cut(s) 88, 1120
TspDTI ATGAA 9 cut(s) 72, 329, 390, 695, 801, 882, 1130, 1276, 1680
TspGWI ACGGA 1 cut(s) 114
TspRI CASTG 6 cut(s) 513, 973, 1035, 1189, 1424, 1572
VpaK11BI GGWCC 4 cut(s) 347, 413, 554, 597
VspI ATTAAT 1 cut(s) 1659
XapI RAATTY 4 cut(s) 286, 1066, 1388, 1413
XceI RCATGY 4 cut(s) 283, 709, 1220, 1229
XmiI GTMKAC 2 cut(s) 450, 1151
XspI CTAG 2 cut(s) 782, 854
ZrmI AGTACT 2 cut(s) 1194, 1852
Zsp2I ATGCAT 1 cut(s) 1462
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.