pycom15g12370

Aldehyde dehydrogenase family

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
Physical Location & Seq
Reverse (-)
8456794 .. 8461035
4242 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1590 bp
ATGAAAGGCCTCTGCATTGATCTTTTTAAGAATTACAGGGAACCAAACCAGTTTGGGTTTAGCGGGTACTGCTGGGATAGGGGCTGCACTAAACCTTGTTCTGCAACTCTGTCGGCTGTAACCGCGGAGGTTGAAGAAGCAAAGCAAACATTCAATCCGGAAAAAGCCGGTCTTCTAGTTAAGGAGCTGCGAAAGAGTTTTAATTCGGGAAGGACGAAAAGCTATGAGTGGAGAAGGTCGCAGTTGGAGAATATTGCAAAGATGCTTGAAGAAAAAGAGAAGGAGATCGCTGAAGCTCTTTACAAGGACCTTTCAAAGCCTGAAATCGAATCATTTATATCCGAGATTGTTCAGGCAAAATCGTCATGTAACGAGGCATTGAAAGAATTGAAGCATTGGATGGTTCCACAGAAGGTCAGCACTTCAATCACAACATATCCATCATCAGCAGAAATTGTGTCAGAACCTCTAGGAGTTGTGTTGGTCATCTCAACATGGAACTTCCCTTTCTTGTTATCTCTTGATCCAGTCATTGGAGCTATTTCAGCCGGCAATGCGGTTGTGCTAAAACCCTCAGAAATTGCTCCAGCTACATCTTCACTCCTTGCAAATTTAGTAGAGGAGTATTTAGATAACTCAGCTGTAAAAGTTGTTGAGGGCGCTGTTCCAGAAACAACTGCATTGTTAGAGCAGAAGTGGGATAAGATACTCTATACAGGTAGTGCAAGAGTAGGGCGCATTGTGATGGCTGCTGCTGCAAAACACCTTACACCTGTAATTCTGGAACTCGGTGGAAAGTCCCCAGCTGTTGTCGACTCAGATGTTAACTTGGAGGTGGCTGTTAGGAGGATAATGGCAGGCAAATGGGCATTGAACAATGGACAAGCTTGCATCGGTGTTGATTACATTATCACTACGAAAGACTTTGCTCCGAAGTTGATAGAAGCTCTAAAGTATGGTCTCGAGCAGTTCTTTGGGAAAGATCCGATGAACTCAAAGGATATATCACGGATAGTGAGCTCTACCCAGTTTACACGGTTGGCGAAGCTGCTGGATGAGGATAAGGTCTCTAATAAGATTGTCCTCGGTGGCCAAAGGGATGAGAAGCAATTAAAAATAGCTCCAACTATCTTGTTGGATGTTCCAGAAGACGCTCAAATTATGCAGGAGGAGATATTTGGGCCATTAATGCCGATCGTCACTGTTGAGAAGATTGAAGACAGTTTCAGTGTGATAAATTCAAAGCCAAAGCCTCTTGCAGTATATGCCTTTACAAACAATGAGCAGCTGAAGAAGGGCTTCGTGGATAACGTATCATCTGGAGGAATGCTCATCAATGACACCGTCCTTCATGTTAGCATAAGCGGTTTACCATTTGGAGGAGTTGGGGAGAGTGGAATGGGTTCATACCACGGAAAATTCTCCTTTGATGGTTTTAGCCACAAGAAAGCAGTTCTTTATCGAGGTTTCGGTGGAGATTCCGATTTGAGGTATCCACCCTACACACCAGAAAAGCAAAGATTATTCAAGGCCGTGATTAATCGCGACATATTAACCATAATCTTATCTCTGATCGGATGGTCTAAATGA

Protein Analysis

530

Amino Acids

58.2

Weight (kDa)

6.33

Isoelectric Point (pI)

37.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aldedh PF00171 49 - 485 2e-87 Aldehyde dehydrogenase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 533
AccI GTMKAC 1 cut(s) 813
AccII CGCG 2 cut(s) 125, 1545
AccIII TCCGGA 1 cut(s) 157
AciI CCGC 5 cut(s) 63, 123, 125, 557, 1365
AclWI GGATC 2 cut(s) 518, 977
AcoI YGGCCR 1 cut(s) 1090
AcsI RAATTY 3 cut(s) 610, 1237, 1418
AcuI CTGAAG 2 cut(s) 312, 1310
AfaI GTAC 1 cut(s) 68
AfiI CCNNNNNNNGG 3 cut(s) 533, 1379, 1488
Alw21I GWGCWC 1 cut(s) 1022
Alw26I GTCTC 2 cut(s) 965, 1072
AlwI GGATC 2 cut(s) 518, 977
Ama87I CYCGRG 1 cut(s) 962
Aor13HI TCCGGA 1 cut(s) 157
AoxI GGCC 4 cut(s) 7, 1090, 1181, 1530
ApeKI GCWGC 7 cut(s) 84, 187, 749, 752, 755, 1048, 1285
ApoI RAATTY 3 cut(s) 610, 1237, 1418
AseI ATTAAT 2 cut(s) 1187, 1539
Asp700I GAANNNNTTC 2 cut(s) 1298, 1402
AspLEI GCGC 2 cut(s) 662, 738
AspS9I GGNCC 2 cut(s) 307, 1181
AvaI CYCGRG 1 cut(s) 962
AvaII GGWCC 1 cut(s) 307
BalI TGGCCA 1 cut(s) 1092
BanII GRGCYC 1 cut(s) 1022
BbsI GAAGAC 3 cut(s) 164, 1155, 1224
Bbv12I GWGCWC 1 cut(s) 1022
BbvI GCAGC 7 cut(s) 71, 174, 736, 739, 742, 1035, 1297
BccI CCATC 5 cut(s) 394, 448, 739, 1424, 1572
BceAI ACGGC 1 cut(s) 1517
BcgI CGANNNNNNTGC 2 cut(s) 93, 127
BciVI GTATCC 1 cut(s) 1503
BcoDI GTCTC 2 cut(s) 965, 1072
BfaI CTAG 2 cut(s) 176, 470
BfoI RGCGCY 1 cut(s) 663
BfuI GTATCC 1 cut(s) 1503
BisI GCNGC 7 cut(s) 85, 188, 750, 753, 756, 1049, 1286
BlsI GCNGC 7 cut(s) 86, 189, 751, 754, 757, 1050, 1287
Bme18I GGWCC 1 cut(s) 307
BmeT110I CYCGRG 1 cut(s) 962
BmgT120I GGNCC 2 cut(s) 307, 1181
BmiI GGNNCC 2 cut(s) 42, 405
BmrI ACTGGG 1 cut(s) 1021
BmsI GCATC 2 cut(s) 252, 900
BmuI ACTGGG 1 cut(s) 1021
BpiI GAAGAC 3 cut(s) 164, 1155, 1224
BplI GAGNNNNNCTC 2 cut(s) 1314, 1346
BpmI CTGGAG 2 cut(s) 570, 1341
BsaI GGTCTC 2 cut(s) 965, 1072
BsaJI CCNNGG 3 cut(s) 123, 1084, 1411
BsaWI WCCGGW 1 cut(s) 157
Bsc4I CCNNNNNNNGG 3 cut(s) 533, 1379, 1488
Bse118I RCCGGY 2 cut(s) 167, 548
Bse1I ACTGG 3 cut(s) 49, 527, 1027
Bse3DI GCAATG 1 cut(s) 559
BseAI TCCGGA 1 cut(s) 157
BseDI CCNNGG 3 cut(s) 123, 1084, 1411
BseGI GGATG 5 cut(s) 405, 1060, 1105, 1144, 1583
BseLI CCNNNNNNNGG 3 cut(s) 533, 1379, 1488
BseMI GCAATG 1 cut(s) 559
BseMII CTCAG 3 cut(s) 588, 651, 831
BseNI ACTGG 3 cut(s) 49, 527, 1027
BseRI GAGGAG 3 cut(s) 635, 1184, 1395
BseXI GCAGC 7 cut(s) 71, 174, 736, 739, 742, 1035, 1297
BseYI CCCAGC 2 cut(s) 72, 802
BsgI GTGCAG 1 cut(s) 70
Bsh1236I CGCG 2 cut(s) 125, 1545
Bsh1285I CGRYCG 1 cut(s) 1197
BshFI GGCC 4 cut(s) 9, 1092, 1183, 1532
BsiEI CGRYCG 1 cut(s) 1197
BsiHKAI GWGCWC 1 cut(s) 1022
BsiHKCI CYCGRG 1 cut(s) 962
BsiSI CCGG 3 cut(s) 158, 168, 549
BslFI GGGAC 1 cut(s) 784
BslI CCNNNNNNNGG 3 cut(s) 533, 1379, 1488
BsmAI GTCTC 2 cut(s) 965, 1072
BsmFI GGGAC 1 cut(s) 784
BsmI GAATGC 1 cut(s) 1332
BsnI GGCC 4 cut(s) 9, 1092, 1183, 1532
Bso31I GGTCTC 2 cut(s) 965, 1072
BsoBI CYCGRG 1 cut(s) 962
Bsp1286I GDGCHC 1 cut(s) 1022
Bsp13I TCCGGA 1 cut(s) 157
Bsp143I GATC 6 cut(s) 19, 285, 523, 982, 1194, 1572
Bsp68I TCGCGA 1 cut(s) 1545
BspACI CCGC 5 cut(s) 63, 123, 125, 557, 1365
BspANI GGCC 4 cut(s) 9, 1092, 1183, 1532
BspCNI CTCAG 3 cut(s) 587, 650, 830
BspEI TCCGGA 1 cut(s) 157
BspFNI CGCG 2 cut(s) 125, 1545
BspLI GGNNCC 2 cut(s) 42, 405
BspPI GGATC 2 cut(s) 518, 977
BspTNI GGTCTC 2 cut(s) 965, 1072
BsrDI GCAATG 1 cut(s) 559
BsrFI RCCGGY 2 cut(s) 167, 548
BsrI ACTGG 3 cut(s) 49, 527, 1027
BssAI RCCGGY 2 cut(s) 167, 548
BssECI CCNNGG 3 cut(s) 123, 1084, 1411
BssMI GATC 6 cut(s) 19, 285, 523, 982, 1194, 1572
Bst4CI ACNGT 4 cut(s) 1038, 1204, 1223, 1345
BstAPI GCANNNNNTGC 1 cut(s) 1265
BstC8I GCNNGC 3 cut(s) 550, 859, 889
BstDEI CTNAG 3 cut(s) 574, 637, 817
BstDSI CCRYGG 2 cut(s) 123, 1411
BstF5I GGATG 5 cut(s) 405, 1060, 1105, 1144, 1583
BstFNI CGCG 2 cut(s) 125, 1545
BstH2I RGCGCY 1 cut(s) 663
BstHHI GCGC 2 cut(s) 662, 738
BstKTI GATC 6 cut(s) 22, 288, 526, 985, 1197, 1575
BstMAI GTCTC 2 cut(s) 965, 1072
BstMBI GATC 6 cut(s) 19, 285, 523, 982, 1194, 1572
BstMCI CGRYCG 1 cut(s) 1197
BstMWI GCNNNNNNNGC 7 cut(s) 69, 122, 545, 554, 755, 1189, 1265
BstUI CGCG 2 cut(s) 125, 1545
BstV1I GCAGC 7 cut(s) 71, 174, 736, 739, 742, 1035, 1297
BstV2I GAAGAC 3 cut(s) 164, 1155, 1224
BstX2I RGATCY 1 cut(s) 982
BstYI RGATCY 1 cut(s) 982
BsuI GTATCC 1 cut(s) 1503
BsuRI GGCC 4 cut(s) 9, 1092, 1183, 1532
BtgI CCRYGG 2 cut(s) 123, 1411
BtsCI GGATG 5 cut(s) 405, 1060, 1105, 1144, 1583
BtsIMutI CAGTG 2 cut(s) 1200, 1234
BtuMI TCGCGA 1 cut(s) 1545
Cac8I GCNNGC 3 cut(s) 550, 859, 889
CfoI GCGC 2 cut(s) 662, 738
Cfr10I RCCGGY 2 cut(s) 167, 548
Cfr13I GGNCC 2 cut(s) 307, 1181
Cfr42I CCGCGG 1 cut(s) 126
CseI GACGC 1 cut(s) 1160
Csp6I GTAC 1 cut(s) 67
CviAII CATG 3 cut(s) 366, 495, 1352
CviQI GTAC 1 cut(s) 67
DdeI CTNAG 3 cut(s) 574, 637, 817
DpnI GATC 6 cut(s) 21, 287, 525, 984, 1196, 1574
DpnII GATC 6 cut(s) 19, 285, 523, 982, 1194, 1572
EaeI YGGCCR 1 cut(s) 1090
Ecl136II GAGCTC 1 cut(s) 1020
Eco147I AGGCCT 1 cut(s) 9
Eco24I GRGCYC 1 cut(s) 1022
Eco31I GGTCTC 2 cut(s) 965, 1072
Eco47I GGWCC 1 cut(s) 307
Eco53kI GAGCTC 1 cut(s) 1020
Eco57I CTGAAG 2 cut(s) 312, 1310
Eco88I CYCGRG 1 cut(s) 962
EcoICRI GAGCTC 1 cut(s) 1020
EcoO109I RGGNCCY 1 cut(s) 307
EcoT38I GRGCYC 1 cut(s) 1022
FaeI CATG 3 cut(s) 369, 498, 1355
FalI AAGNNNNNCTT 6 cut(s) 156, 188, 1283, 1315, 1440, 1472
FaqI GGGAC 1 cut(s) 784
FatI CATG 3 cut(s) 365, 494, 1351
FauI CCCGC 1 cut(s) 56
FblI GTMKAC 1 cut(s) 813
Fnu4HI GCNGC 7 cut(s) 85, 188, 750, 753, 756, 1049, 1286
FokI GGATG 4 cut(s) 412, 1067, 1112, 1151
FriOI GRGCYC 1 cut(s) 1022
Fsp4HI GCNGC 7 cut(s) 85, 188, 750, 753, 756, 1049, 1286
FspBI CTAG 2 cut(s) 176, 470
GlaI GCGC 2 cut(s) 661, 737
GluI GCNGC 7 cut(s) 85, 188, 750, 753, 756, 1049, 1286
GsaI CCCAGC 2 cut(s) 76, 806
GsuI CTGGAG 2 cut(s) 570, 1341
HaeII RGCGCY 1 cut(s) 663
HaeIII GGCC 4 cut(s) 9, 1092, 1183, 1532
HapII CCGG 3 cut(s) 158, 168, 549
HgaI GACGC 1 cut(s) 1160
HhaI GCGC 2 cut(s) 662, 738
Hin1II CATG 3 cut(s) 369, 498, 1355
Hin6I GCGC 2 cut(s) 660, 736
HinP1I GCGC 2 cut(s) 660, 736
HincII GTYRAC 2 cut(s) 814, 826
HindII GTYRAC 2 cut(s) 814, 826
HindIII AAGCTT 1 cut(s) 885
HinfI GANTC 3 cut(s) 329, 815, 1478
HpaI GTTAAC 1 cut(s) 826
HpaII CCGG 3 cut(s) 158, 168, 549
Hpy166II GTNNAC 4 cut(s) 814, 826, 1032, 1370
Hpy188I TCNGA 9 cut(s) 343, 463, 577, 820, 933, 987, 1483, 1572, 1577
Hpy188III TCNNGA 9 cut(s) 158, 207, 521, 668, 782, 962, 1145, 1320, 1544
Hpy8I GTNNAC 4 cut(s) 814, 826, 1032, 1370
HpyAV CCTTC 6 cut(s) 204, 228, 274, 406, 1288, 1358
HpyCH4III ACNGT 4 cut(s) 1038, 1204, 1223, 1345
HpyCH4IV ACGT 1 cut(s) 1311
HpyF10VI GCNNNNNNNGC 7 cut(s) 69, 122, 545, 554, 755, 1189, 1265
HpyF3I CTNAG 3 cut(s) 574, 637, 817
HpySE526I ACGT 1 cut(s) 1311
Hsp92II CATG 3 cut(s) 369, 498, 1355
HspAI GCGC 2 cut(s) 660, 736
Kpn2I TCCGGA 1 cut(s) 157
KroI GCCGGC 1 cut(s) 548
KroNI GCCGGC 1 cut(s) 550
KspAI GTTAAC 1 cut(s) 826
KspI CCGCGG 1 cut(s) 126
Kzo9I GATC 6 cut(s) 19, 285, 523, 982, 1194, 1572
LmnI GCTCC 5 cut(s) 184, 536, 589, 934, 1126
Lsp1109I GCAGC 7 cut(s) 71, 174, 736, 739, 742, 1035, 1297
LweI GCATC 2 cut(s) 252, 900
MaeI CTAG 2 cut(s) 176, 470
MaeII ACGT 1 cut(s) 1311
MaeIII GTNAC 3 cut(s) 118, 368, 1198
MalI GATC 6 cut(s) 21, 287, 525, 984, 1196, 1574
MboI GATC 6 cut(s) 19, 285, 523, 982, 1194, 1572
MboII GAAGA 8 cut(s) 146, 164, 281, 588, 1160, 1222, 1229, 1303
MflI RGATCY 1 cut(s) 982
MhlI GDGCHC 1 cut(s) 1022
MlsI TGGCCA 1 cut(s) 1092
MluNI TGGCCA 1 cut(s) 1092
MlyI GAGTC 1 cut(s) 809
MmeI TCCRAC 3 cut(s) 225, 1116, 1148
Mox20I TGGCCA 1 cut(s) 1092
MroI TCCGGA 1 cut(s) 157
MroNI GCCGGC 1 cut(s) 548
MroXI GAANNNNTTC 2 cut(s) 1298, 1402
MscI TGGCCA 1 cut(s) 1092
MseI TTAA 8 cut(s) 27, 180, 201, 825, 1112, 1187, 1539, 1553
MslI CAYNNNNRTG 1 cut(s) 743
Msp20I TGGCCA 1 cut(s) 1092
MspA1I CMGCKG 4 cut(s) 125, 641, 806, 1288
MspI CCGG 3 cut(s) 158, 168, 549
Mva1269I GAATGC 1 cut(s) 1332
MvnI CGCG 2 cut(s) 125, 1545
MwoI GCNNNNNNNGC 7 cut(s) 69, 122, 545, 554, 755, 1189, 1265
NaeI GCCGGC 1 cut(s) 550
NdeII GATC 6 cut(s) 19, 285, 523, 982, 1194, 1572
NgoMIV GCCGGC 1 cut(s) 548
NlaIII CATG 3 cut(s) 369, 498, 1355
NlaIV GGNNCC 2 cut(s) 42, 405
NmuCI GTSAC 1 cut(s) 1198
NruI TCGCGA 1 cut(s) 1545
PaeR7I CTCGAG 1 cut(s) 962
PceI AGGCCT 1 cut(s) 9
PcsI WCGNNNNNNNCGW 2 cut(s) 212, 1308
PctI GAATGC 1 cut(s) 1332
PdiI GCCGGC 1 cut(s) 550
PdmI GAANNNNTTC 2 cut(s) 1298, 1402
PfeI GAWTC 2 cut(s) 329, 1478
PflFI GACNNNGTC 1 cut(s) 1343
PflMI CCANNNNNTGG 1 cut(s) 533
PkrI GCNGC 7 cut(s) 86, 189, 751, 754, 757, 1050, 1287
Ple19I CGATCG 1 cut(s) 1197
PleI GAGTC 1 cut(s) 809
PpsI GAGTC 1 cut(s) 809
PpuMI RGGWCCY 1 cut(s) 307
PshBI ATTAAT 2 cut(s) 1187, 1539
Psp124BI GAGCTC 1 cut(s) 1022
Psp5II RGGWCCY 1 cut(s) 307
PspFI CCCAGC 2 cut(s) 72, 802
PspN4I GGNNCC 2 cut(s) 42, 405
PspPI GGNCC 2 cut(s) 307, 1181
PspPPI RGGWCCY 1 cut(s) 307
PsuI RGATCY 1 cut(s) 982
PsyI GACNNNGTC 1 cut(s) 1343
PvuI CGATCG 1 cut(s) 1197
PvuII CAGCTG 3 cut(s) 641, 806, 1288
RruI TCGCGA 1 cut(s) 1545
RsaI GTAC 1 cut(s) 68
RsaNI GTAC 1 cut(s) 67
RseI CAYNNNNRTG 1 cut(s) 743
SacI GAGCTC 1 cut(s) 1022
SacII CCGCGG 1 cut(s) 126
SalI GTCGAC 1 cut(s) 812
SaqAI TTAA 8 cut(s) 27, 180, 201, 825, 1112, 1187, 1539, 1553
SatI GCNGC 7 cut(s) 85, 188, 750, 753, 756, 1049, 1286
Sau3AI GATC 6 cut(s) 19, 285, 523, 982, 1194, 1572
Sau96I GGNCC 2 cut(s) 307, 1181
SchI GAGTC 1 cut(s) 809
SduI GDGCHC 1 cut(s) 1022
SfaNI GCATC 2 cut(s) 252, 900
Sfr274I CTCGAG 1 cut(s) 962
Sfr303I CCGCGG 1 cut(s) 126
SgrBI CCGCGG 1 cut(s) 126
SinI GGWCC 1 cut(s) 307
SlaI CTCGAG 1 cut(s) 962
SmiMI CAYNNNNRTG 1 cut(s) 743
SmlI CTYRAG 1 cut(s) 962
SmoI CTYRAG 1 cut(s) 962
SseBI AGGCCT 1 cut(s) 9
SsiI CCGC 5 cut(s) 63, 123, 125, 557, 1365
SspI AATATT 1 cut(s) 253
SspMI CTAG 2 cut(s) 176, 470
SstI GAGCTC 1 cut(s) 1022
StuI AGGCCT 1 cut(s) 9
TaaI ACNGT 4 cut(s) 1038, 1204, 1223, 1345
TaiI ACGT 1 cut(s) 1314
TaqI TCGA 4 cut(s) 327, 813, 963, 1462
TfiI GAWTC 2 cut(s) 329, 1478
Tru1I TTAA 8 cut(s) 27, 180, 201, 825, 1112, 1187, 1539, 1553
Tru9I TTAA 8 cut(s) 27, 180, 201, 825, 1112, 1187, 1539, 1553
TscAI CASTG 2 cut(s) 1207, 1234
TseFI GTSAC 1 cut(s) 1198
TseI GCWGC 7 cut(s) 84, 187, 749, 752, 755, 1048, 1285
Tsp45I GTSAC 1 cut(s) 1198
TspDTI ATGAA 4 cut(s) 17, 1004, 1340, 1395
TspGWI ACGGA 2 cut(s) 1024, 1428
TspRI CASTG 2 cut(s) 1207, 1234
Tth111I GACNNNGTC 1 cut(s) 1343
Van91I CCANNNNNTGG 1 cut(s) 533
VpaK11BI GGWCC 1 cut(s) 307
VspI ATTAAT 2 cut(s) 1187, 1539
XapI RAATTY 3 cut(s) 610, 1237, 1418
XhoI CTCGAG 1 cut(s) 962
XmiI GTMKAC 1 cut(s) 813
XmnI GAANNNNTTC 2 cut(s) 1298, 1402
XspI CTAG 2 cut(s) 176, 470
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.