pycom15g13560

Signal recognition particle receptor subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0018936
Physical Location & Seq
Forward (+)
9228280 .. 9228603
324 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 324 bp
ATGTTAGAACAATTACTGATATTTACTAGAGGAGGATTAATCCTCTGGACATGCAAAGAGCTTGGAAATGCTCTTAAGGGATCTCCAATCGACACCTTGATCCGATCCTGTCTTTTGGAGGAACGGTCTGGTTTAGCTTCTTTCGATTACAATGCCCCTGGGGCTGCTTACACGCTCAAATGGACCTTCCACAATGAGCTCGGGCTCGTGTTTGTCGCTGTTTATCAGAAGATCCTCCATCTGTTGTATGTGGATGAACTGCTTTCGATGGTGAAACATGAGTTCTCAGAGATTTATCGATCCGAAAAGGACAGTCTATGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03060 map03060
Pfam Domains
Protein Families
SRP-alpha_N SRP54 SRP54_N

Protein Analysis

108

Amino Acids

12.2

Weight (kDa)

5.53

Isoelectric Point (pI)

41.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SRP-alpha_N PF04086 28 - 102 9.8e-36 Signal recognition particle, alpha subunit, N-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0018936)

Species Orthologous Gene IDs
pyrus_communis pycom15g13560
rosa_chinensis RchiOBHm_Chr7g0224901
rosa_multiflora Rmu_co8403257.1_g000002 Rmu_sc0000307.1_g000010 Rmu_ssc0000171.1_g000020
rosa_roxburghii Rroxscaffold_3G00234300 Rroxscaffold_6G00416220
rosa_rugosa Rorug05G0194100
rosa_wichuraiana Rw3G021850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 5 cut(s) 88, 94, 99, 226, 294
AflII CTTAAG 1 cut(s) 74
AjnI CCWGG 1 cut(s) 157
AluBI AGCT 3 cut(s) 61, 137, 199
AluI AGCT 3 cut(s) 61, 137, 199
Alw21I GWGCWC 1 cut(s) 201
AlwI GGATC 5 cut(s) 88, 94, 99, 226, 294
Ama87I CYCGRG 1 cut(s) 200
ApeKI GCWGC 1 cut(s) 164
AseI ATTAAT 1 cut(s) 38
AspS9I GGNCC 1 cut(s) 183
AsuHPI GGTGA 1 cut(s) 283
AvaI CYCGRG 1 cut(s) 200
AvaII GGWCC 1 cut(s) 183
BanII GRGCYC 2 cut(s) 201, 207
BauI CACGAG 1 cut(s) 206
Bbv12I GWGCWC 1 cut(s) 201
BbvI GCAGC 1 cut(s) 151
BccI CCATC 2 cut(s) 246, 262
BcgI CGANNNNNNTGC 2 cut(s) 134, 168
BciT130I CCWGG 1 cut(s) 159
BfaI CTAG 1 cut(s) 27
BfrI CTTAAG 1 cut(s) 74
BglI GCCNNNNNGGC 1 cut(s) 161
BisI GCNGC 1 cut(s) 165
BlsI GCNGC 1 cut(s) 166
Bme1390I CCNGG 1 cut(s) 159
Bme18I GGWCC 1 cut(s) 183
BmeT110I CYCGRG 1 cut(s) 200
BmgT120I GGNCC 1 cut(s) 183
BmrFI CCNGG 1 cut(s) 159
Bsa29I ATCGAT 1 cut(s) 298
BsaJI CCNNGG 2 cut(s) 157, 158
BsaXI ACNNNNNCTCC 2 cut(s) 110, 140
BseBI CCWGG 1 cut(s) 159
BseCI ATCGAT 1 cut(s) 298
BseDI CCNNGG 2 cut(s) 157, 158
BseGI GGATG 1 cut(s) 259
BseMII CTCAG 1 cut(s) 300
BseRI GAGGAG 1 cut(s) 45
BseXI GCAGC 1 cut(s) 151
BshVI ATCGAT 1 cut(s) 298
BsiHKAI GWGCWC 1 cut(s) 201
BsiHKCI CYCGRG 1 cut(s) 200
BsoBI CYCGRG 1 cut(s) 200
Bsp1286I GDGCHC 2 cut(s) 201, 207
Bsp143I GATC 5 cut(s) 80, 99, 104, 231, 299
BspCNI CTCAG 1 cut(s) 299
BspDI ATCGAT 1 cut(s) 298
BspPI GGATC 5 cut(s) 88, 94, 99, 226, 294
BspTI CTTAAG 1 cut(s) 74
BssECI CCNNGG 2 cut(s) 157, 158
BssMI GATC 5 cut(s) 80, 99, 104, 231, 299
BssSI CACGAG 1 cut(s) 206
Bst2BI CACGAG 1 cut(s) 206
Bst2UI CCWGG 1 cut(s) 159
Bst4CI ACNGT 2 cut(s) 126, 314
BstAFI CTTAAG 1 cut(s) 74
BstDEI CTNAG 1 cut(s) 286
BstF5I GGATG 1 cut(s) 259
BstKTI GATC 5 cut(s) 83, 102, 107, 234, 302
BstMBI GATC 5 cut(s) 80, 99, 104, 231, 299
BstMWI GCNNNNNNNGC 1 cut(s) 161
BstNI CCWGG 1 cut(s) 159
BstNSI RCATGY 1 cut(s) 54
BstSCI CCNGG 1 cut(s) 157
BstV1I GCAGC 1 cut(s) 151
BstX2I RGATCY 2 cut(s) 80, 231
BstYI RGATCY 2 cut(s) 80, 231
Bsu15I ATCGAT 1 cut(s) 298
BsuTUI ATCGAT 1 cut(s) 298
BtsCI GGATG 1 cut(s) 259
Cfr13I GGNCC 1 cut(s) 183
ClaI ATCGAT 1 cut(s) 298
CviAII CATG 2 cut(s) 51, 278
CviJI RGCY 5 cut(s) 61, 137, 164, 199, 205
CviKI_1 RGCY 5 cut(s) 61, 137, 164, 199, 205
DdeI CTNAG 1 cut(s) 286
DpnI GATC 5 cut(s) 82, 101, 106, 233, 301
DpnII GATC 5 cut(s) 80, 99, 104, 231, 299
Ecl136II GAGCTC 1 cut(s) 199
Eco24I GRGCYC 2 cut(s) 201, 207
Eco47I GGWCC 1 cut(s) 183
Eco53kI GAGCTC 1 cut(s) 199
Eco88I CYCGRG 1 cut(s) 200
EcoICRI GAGCTC 1 cut(s) 199
EcoRII CCWGG 1 cut(s) 157
EcoT38I GRGCYC 2 cut(s) 201, 207
FaeI CATG 2 cut(s) 54, 281
FaiI YATR 4 cut(s) 52, 249, 279, 319
FatI CATG 2 cut(s) 50, 277
Fnu4HI GCNGC 1 cut(s) 165
FokI GGATG 1 cut(s) 266
FriOI GRGCYC 2 cut(s) 201, 207
Fsp4HI GCNGC 1 cut(s) 165
FspBI CTAG 1 cut(s) 27
GluI GCNGC 1 cut(s) 165
Hin1II CATG 2 cut(s) 54, 281
HphI GGTGA 1 cut(s) 283
Hpy188I TCNGA 4 cut(s) 104, 228, 289, 304
Hpy188III TCNNGA 1 cut(s) 46
HpyAV CCTTC 1 cut(s) 196
HpyCH4III ACNGT 2 cut(s) 126, 314
HpyCH4V TGCA 1 cut(s) 54
HpyF10VI GCNNNNNNNGC 1 cut(s) 161
HpyF3I CTNAG 1 cut(s) 286
Hsp92II CATG 2 cut(s) 54, 281
Kzo9I GATC 5 cut(s) 80, 99, 104, 231, 299
LpnPI CCDG 5 cut(s) 31, 114, 121, 144, 171
Lsp1109I GCAGC 1 cut(s) 151
MaeI CTAG 1 cut(s) 27
MalI GATC 5 cut(s) 82, 101, 106, 233, 301
MboI GATC 5 cut(s) 80, 99, 104, 231, 299
MboII GAAGA 1 cut(s) 241
MflI RGATCY 2 cut(s) 80, 231
MhlI GDGCHC 2 cut(s) 201, 207
MluCI AATT 1 cut(s) 11
MnlI CCTC 5 cut(s) 23, 26, 53, 112, 245
MseI TTAA 2 cut(s) 38, 75
MspCI CTTAAG 1 cut(s) 74
MspR9I CCNGG 1 cut(s) 159
MvaI CCWGG 1 cut(s) 159
MwoI GCNNNNNNNGC 1 cut(s) 161
NdeII GATC 5 cut(s) 80, 99, 104, 231, 299
NlaIII CATG 2 cut(s) 54, 281
NspI RCATGY 1 cut(s) 54
PasI CCCWGGG 1 cut(s) 158
PkrI GCNGC 1 cut(s) 166
PshBI ATTAAT 1 cut(s) 38
Psp124BI GAGCTC 1 cut(s) 201
Psp6I CCWGG 1 cut(s) 157
PspGI CCWGG 1 cut(s) 157
PspPI GGNCC 1 cut(s) 183
PsuI RGATCY 2 cut(s) 80, 231
SacI GAGCTC 1 cut(s) 201
SaqAI TTAA 2 cut(s) 38, 75
SatI GCNGC 1 cut(s) 165
Sau3AI GATC 5 cut(s) 80, 99, 104, 231, 299
Sau96I GGNCC 1 cut(s) 183
ScrFI CCNGG 1 cut(s) 159
SduI GDGCHC 2 cut(s) 201, 207
SetI ASST 5 cut(s) 63, 98, 139, 188, 201
SinI GGWCC 1 cut(s) 183
SmlI CTYRAG 1 cut(s) 74
SmoI CTYRAG 1 cut(s) 74
Sse9I AATT 1 cut(s) 11
SspMI CTAG 1 cut(s) 27
SstI GAGCTC 1 cut(s) 201
StyD4I CCNGG 1 cut(s) 157
TaaI ACNGT 2 cut(s) 126, 314
TaqI TCGA 4 cut(s) 90, 144, 266, 298
TasI AATT 1 cut(s) 11
Tru1I TTAA 2 cut(s) 38, 75
Tru9I TTAA 2 cut(s) 38, 75
TseI GCWGC 1 cut(s) 164
TspDTI ATGAA 1 cut(s) 270
Vha464I CTTAAG 1 cut(s) 74
VpaK11BI GGWCC 1 cut(s) 183
VspI ATTAAT 1 cut(s) 38
XceI RCATGY 1 cut(s) 54
XspI CTAG 1 cut(s) 27
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.