Rroxscaffold_6G00416220

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0018936
Physical Location & Seq
Forward (+)
38259683 .. 38262346
2664 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00416220.1

Sequence Viewer

Length: 264 bp
ATGCACCGCTGCGGCCTCCACGCGCAACAACCCGGGGCTGCGACGCCACGCGTAGCTCAACCCTCACCGGTTTCCAGCCATCCCTTCACCACACCGCCTCCGTCGGTCCACTCAACAAGCGAAACGAAGCAAAACCCATTAATCCTCCGTCCGCCGATGCCGTTCGAGCATCACCGGACCTCTCGGCTCTGCATGTCTTCGTTTTCCGACCTCCGGTCCAAATCAAGCGAAACCACCTCCAAGGATAGAATCAGCACCTCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

87

Amino Acids

9.56

Weight (kDa)

10.28

Isoelectric Point (pI)

84.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0018936)

Species Orthologous Gene IDs
pyrus_communis pycom15g13560
rosa_chinensis RchiOBHm_Chr7g0224901
rosa_multiflora Rmu_co8403257.1_g000002 Rmu_sc0000307.1_g000010 Rmu_ssc0000171.1_g000020
rosa_roxburghii Rroxscaffold_3G00234300 Rroxscaffold_6G00416220
rosa_rugosa Rorug05G0194100
rosa_wichuraiana Rw3G021850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 23, 51
AciI CCGC 4 cut(s) 7, 12, 95, 152
AcyI GRCGYC 1 cut(s) 44
AfiI CCNNNNNNNGG 1 cut(s) 213
AflIII ACRYGT 1 cut(s) 49
AgeI ACCGGT 1 cut(s) 67
AhdI GACNNNNNGTC 1 cut(s) 214
AluBI AGCT 1 cut(s) 56
AluI AGCT 1 cut(s) 56
Ama87I CYCGRG 1 cut(s) 32
AoxI GGCC 1 cut(s) 13
ApeKI GCWGC 2 cut(s) 9, 38
AseI ATTAAT 1 cut(s) 140
AsiGI ACCGGT 1 cut(s) 67
AspLEI GCGC 1 cut(s) 25
AspS9I GGNCC 3 cut(s) 106, 177, 216
AsuC2I CCSGG 2 cut(s) 33, 34
AsuHPI GGTGA 3 cut(s) 57, 79, 164
AvaI CYCGRG 1 cut(s) 32
AvaII GGWCC 3 cut(s) 106, 177, 216
BbsI GAAGAC 1 cut(s) 189
BbvI GCAGC 1 cut(s) 25
BccI CCATC 1 cut(s) 87
BceAI ACGGC 1 cut(s) 145
BcnI CCSGG 2 cut(s) 33, 34
BisI GCNGC 3 cut(s) 10, 13, 39
BlsI GCNGC 3 cut(s) 11, 14, 40
Bme1390I CCNGG 2 cut(s) 33, 34
Bme18I GGWCC 3 cut(s) 106, 177, 216
BmeRI GACNNNNNGTC 1 cut(s) 214
BmeT110I CYCGRG 1 cut(s) 32
BmgT120I GGNCC 3 cut(s) 106, 177, 216
BmrFI CCNGG 2 cut(s) 33, 34
BmsI GCATC 2 cut(s) 147, 178
BpiI GAAGAC 1 cut(s) 189
BpuMI CCSGG 2 cut(s) 33, 34
BsaHI GRCGYC 1 cut(s) 44
BsaJI CCNNGG 3 cut(s) 32, 33, 240
BsaWI WCCGGW 3 cut(s) 67, 174, 213
BsaXI ACNNNNNCTCC 2 cut(s) 82, 112
Bsc4I CCNNNNNNNGG 1 cut(s) 213
Bse118I RCCGGY 1 cut(s) 67
BseDI CCNNGG 3 cut(s) 32, 33, 240
BseGI GGATG 1 cut(s) 79
BseLI CCNNNNNNNGG 1 cut(s) 213
BseXI GCAGC 1 cut(s) 25
Bsh1236I CGCG 2 cut(s) 23, 51
BshFI GGCC 1 cut(s) 15
BshTI ACCGGT 1 cut(s) 67
BsiHKCI CYCGRG 1 cut(s) 32
BsiSI CCGG 4 cut(s) 33, 68, 175, 214
BslI CCNNNNNNNGG 1 cut(s) 213
BsnI GGCC 1 cut(s) 15
BsoBI CYCGRG 1 cut(s) 32
BspACI CCGC 4 cut(s) 7, 12, 95, 152
BspANI GGCC 1 cut(s) 15
BspFNI CGCG 2 cut(s) 23, 51
BsrFI RCCGGY 1 cut(s) 67
BssAI RCCGGY 1 cut(s) 67
BssECI CCNNGG 3 cut(s) 32, 33, 240
BssNI GRCGYC 1 cut(s) 44
BssT1I CCWWGG 1 cut(s) 240
BstACI GRCGYC 1 cut(s) 44
BstF5I GGATG 1 cut(s) 79
BstFNI CGCG 2 cut(s) 23, 51
BstHHI GCGC 1 cut(s) 25
BstMWI GCNNNNNNNGC 1 cut(s) 166
BstNSI RCATGY 1 cut(s) 196
BstSCI CCNGG 2 cut(s) 31, 32
BstUI CGCG 2 cut(s) 23, 51
BstV1I GCAGC 1 cut(s) 25
BstV2I GAAGAC 1 cut(s) 189
BsuRI GGCC 1 cut(s) 15
BtsCI GGATG 1 cut(s) 79
CfoI GCGC 1 cut(s) 25
Cfr10I RCCGGY 1 cut(s) 67
Cfr13I GGNCC 3 cut(s) 106, 177, 216
Cfr9I CCCGGG 1 cut(s) 32
CseI GACGC 1 cut(s) 52
CspAI ACCGGT 1 cut(s) 67
CviAII CATG 1 cut(s) 193
CviJI RGCY 5 cut(s) 15, 38, 56, 78, 187
CviKI_1 RGCY 5 cut(s) 15, 38, 56, 78, 187
DriI GACNNNNNGTC 1 cut(s) 214
Eam1105I GACNNNNNGTC 1 cut(s) 214
EciI GGCGGA 1 cut(s) 141
Eco130I CCWWGG 1 cut(s) 240
Eco47I GGWCC 3 cut(s) 106, 177, 216
Eco88I CYCGRG 1 cut(s) 32
EcoT14I CCWWGG 1 cut(s) 240
ErhI CCWWGG 1 cut(s) 240
FaeI CATG 1 cut(s) 196
FaiI YATR 2 cut(s) 194, 262
FatI CATG 1 cut(s) 192
Fnu4HI GCNGC 3 cut(s) 10, 13, 39
FokI GGATG 1 cut(s) 66
Fsp4HI GCNGC 3 cut(s) 10, 13, 39
GlaI GCGC 1 cut(s) 24
GluI GCNGC 3 cut(s) 10, 13, 39
HaeIII GGCC 1 cut(s) 15
HapII CCGG 4 cut(s) 33, 68, 175, 214
HgaI GACGC 1 cut(s) 52
HhaI GCGC 1 cut(s) 25
Hin1I GRCGYC 1 cut(s) 44
Hin1II CATG 1 cut(s) 196
Hin6I GCGC 1 cut(s) 23
HinP1I GCGC 1 cut(s) 23
HinfI GANTC 1 cut(s) 249
HpaII CCGG 4 cut(s) 33, 68, 175, 214
HphI GGTGA 3 cut(s) 57, 79, 164
Hpy166II GTNNAC 1 cut(s) 109
Hpy188I TCNGA 1 cut(s) 208
Hpy8I GTNNAC 1 cut(s) 109
Hpy99I CGWCG 2 cut(s) 46, 106
HpyAV CCTTC 1 cut(s) 94
HpyCH4V TGCA 2 cut(s) 4, 192
HpyF10VI GCNNNNNNNGC 1 cut(s) 166
Hsp92I GRCGYC 1 cut(s) 44
Hsp92II CATG 1 cut(s) 196
HspAI GCGC 1 cut(s) 23
LpnPI CCDG 5 cut(s) 46, 81, 88, 188, 227
Lsp1109I GCAGC 1 cut(s) 25
LweI GCATC 2 cut(s) 147, 178
MboII GAAGA 1 cut(s) 189
MluI ACGCGT 1 cut(s) 49
MmeI TCCRAC 1 cut(s) 231
MnlI CCTC 7 cut(s) 26, 73, 108, 155, 190, 221, 247
MseI TTAA 1 cut(s) 140
MspA1I CMGCKG 1 cut(s) 9
MspI CCGG 4 cut(s) 33, 68, 175, 214
MspR9I CCNGG 2 cut(s) 33, 34
MvnI CGCG 2 cut(s) 23, 51
MwoI GCNNNNNNNGC 1 cut(s) 166
NciI CCSGG 2 cut(s) 33, 34
NlaIII CATG 1 cut(s) 196
NmeAIII GCCGAG 1 cut(s) 163
NspI RCATGY 1 cut(s) 196
PfeI GAWTC 1 cut(s) 249
PinAI ACCGGT 1 cut(s) 67
PkrI GCNGC 3 cut(s) 11, 14, 40
PshBI ATTAAT 1 cut(s) 140
PspPI GGNCC 3 cut(s) 106, 177, 216
SaqAI TTAA 1 cut(s) 140
SatI GCNGC 3 cut(s) 10, 13, 39
Sau96I GGNCC 3 cut(s) 106, 177, 216
ScrFI CCNGG 2 cut(s) 33, 34
SetI ASST 5 cut(s) 58, 182, 213, 239, 260
SfaNI GCATC 2 cut(s) 147, 178
SinI GGWCC 3 cut(s) 106, 177, 216
SmaI CCCGGG 1 cut(s) 34
SsiI CCGC 4 cut(s) 7, 12, 95, 152
StyD4I CCNGG 2 cut(s) 31, 32
StyI CCWWGG 1 cut(s) 240
TaqI TCGA 1 cut(s) 165
TaqII GACCGA 1 cut(s) 94
TauI GCSGC 1 cut(s) 15
TfiI GAWTC 1 cut(s) 249
Tru1I TTAA 1 cut(s) 140
Tru9I TTAA 1 cut(s) 140
TseI GCWGC 2 cut(s) 9, 38
TspGWI ACGGA 2 cut(s) 90, 137
TspMI CCCGGG 1 cut(s) 32
VpaK11BI GGWCC 3 cut(s) 106, 177, 216
VspI ATTAAT 1 cut(s) 140
XceI RCATGY 1 cut(s) 196
XmaI CCCGGG 1 cut(s) 32
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.