Rw3G021850

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
OG0018936
Physical Location & Seq
Forward (+)
26559607 .. 26560058
452 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G021850.1

Sequence Viewer

Length: 333 bp
ATGCAACACCCCAAGACTGCGCGCTACTGTCCCTTGACCCTCGCCGGTTTCCGGCGATTTCCTCGCCCTTCCGCCACCGTCATTCTACTCAGCAAGCAAAGCGGAGCAAAACCCAGAAACCTCCCTGCCTGCCGACGCCGGACGACGCCGTTCAAGCATCACCGGAGCGCTCGGCTTTGCATGTCTTCGTTTTCCGGCCTCCAGTCCAAATCGAGCGAAACCACCCTCAAGAATCGAATCAGCGCCTTGTCAAACACCAAAACCCTAGGGCCCCGACCTCTAACTCCAGCCAGAGCCACCTCGTCTGCCGCAGGGGCCACCGCAGGTGCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

110

Amino Acids

11.85

Weight (kDa)

12.0

Isoelectric Point (pI)

69.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0018936)

Species Orthologous Gene IDs
pyrus_communis pycom15g13560
rosa_chinensis RchiOBHm_Chr7g0224901
rosa_multiflora Rmu_co8403257.1_g000002 Rmu_sc0000307.1_g000010 Rmu_ssc0000171.1_g000020
rosa_roxburghii Rroxscaffold_3G00234300 Rroxscaffold_6G00416220
rosa_rugosa Rorug05G0194100
rosa_wichuraiana Rw3G021850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 314
Acc36I ACCTGC 1 cut(s) 314
AccII CGCG 1 cut(s) 22
AciI CCGC 4 cut(s) 72, 102, 309, 321
AcyI GRCGYC 2 cut(s) 136, 146
AfeI AGCGCT 1 cut(s) 169
AfiI CCNNNNNNNGG 1 cut(s) 51
AgsI TTSAA 1 cut(s) 154
Aor51HI AGCGCT 1 cut(s) 169
AoxI GGCC 3 cut(s) 196, 269, 315
ApaI GGGCCC 1 cut(s) 273
AspA2I CCTAGG 1 cut(s) 265
AspLEI GCGC 4 cut(s) 22, 24, 170, 245
AspS9I GGNCC 3 cut(s) 269, 270, 315
AsuHPI GGTGA 1 cut(s) 152
AvrII CCTAGG 1 cut(s) 265
BaeGI GKGCMC 1 cut(s) 273
BanII GRGCYC 1 cut(s) 273
BbsI GAAGAC 1 cut(s) 177
BceAI ACGGC 1 cut(s) 133
BfaI CTAG 1 cut(s) 266
BfoI RGCGCY 2 cut(s) 171, 246
BfuAI ACCTGC 1 cut(s) 314
BglI GCCNNNNNGGC 1 cut(s) 314
BisI GCNGC 1 cut(s) 309
BlnI CCTAGG 1 cut(s) 265
BlsI GCNGC 1 cut(s) 310
BmgT120I GGNCC 3 cut(s) 269, 270, 315
BmiI GGNNCC 3 cut(s) 271, 272, 316
BmsI GCATC 1 cut(s) 166
BpiI GAAGAC 1 cut(s) 177
BpmI CTGGAG 2 cut(s) 185, 270
BpuEI CTTGAG 1 cut(s) 212
BsaHI GRCGYC 2 cut(s) 136, 146
BsaJI CCNNGG 1 cut(s) 265
BsaWI WCCGGW 1 cut(s) 162
Bsc4I CCNNNNNNNGG 1 cut(s) 51
Bse118I RCCGGY 1 cut(s) 44
Bse1I ACTGG 1 cut(s) 202
BseDI CCNNGG 1 cut(s) 265
BseLI CCNNNNNNNGG 1 cut(s) 51
BseMII CTCAG 1 cut(s) 103
BseNI ACTGG 1 cut(s) 202
BsePI GCGCGC 1 cut(s) 20
BseSI GKGCMC 1 cut(s) 273
Bsh1236I CGCG 1 cut(s) 22
BshFI GGCC 3 cut(s) 198, 271, 317
BsiSI CCGG 5 cut(s) 45, 52, 139, 163, 195
BslFI GGGAC 1 cut(s) 15
BslI CCNNNNNNNGG 1 cut(s) 51
BsmFI GGGAC 1 cut(s) 15
BsnI GGCC 3 cut(s) 198, 271, 317
Bsp120I GGGCCC 1 cut(s) 269
Bsp1286I GDGCHC 1 cut(s) 273
BspACI CCGC 4 cut(s) 72, 102, 309, 321
BspANI GGCC 3 cut(s) 198, 271, 317
BspCNI CTCAG 1 cut(s) 102
BspFNI CGCG 1 cut(s) 22
BspLI GGNNCC 3 cut(s) 271, 272, 316
BspMI ACCTGC 1 cut(s) 314
BsrFI RCCGGY 1 cut(s) 44
BsrI ACTGG 1 cut(s) 202
BssAI RCCGGY 1 cut(s) 44
BssECI CCNNGG 1 cut(s) 265
BssHII GCGCGC 1 cut(s) 20
BssNI GRCGYC 2 cut(s) 136, 146
BssT1I CCWWGG 1 cut(s) 265
Bst4CI ACNGT 2 cut(s) 29, 79
BstACI GRCGYC 2 cut(s) 136, 146
BstC8I GCNNGC 3 cut(s) 22, 95, 130
BstDEI CTNAG 1 cut(s) 89
BstFNI CGCG 1 cut(s) 22
BstH2I RGCGCY 2 cut(s) 171, 246
BstHHI GCGC 4 cut(s) 22, 24, 170, 245
BstMWI GCNNNNNNNGC 3 cut(s) 99, 154, 314
BstNSI RCATGY 1 cut(s) 184
BstSLI GKGCMC 1 cut(s) 273
BstUI CGCG 1 cut(s) 22
BstV2I GAAGAC 1 cut(s) 177
BsuRI GGCC 3 cut(s) 198, 271, 317
BveI ACCTGC 1 cut(s) 314
Cac8I GCNNGC 3 cut(s) 22, 95, 130
CfoI GCGC 4 cut(s) 22, 24, 170, 245
Cfr10I RCCGGY 1 cut(s) 44
Cfr13I GGNCC 3 cut(s) 269, 270, 315
CseI GACGC 2 cut(s) 144, 154
CviAII CATG 1 cut(s) 181
CviJI RGCY 6 cut(s) 175, 198, 271, 290, 296, 317
CviKI_1 RGCY 6 cut(s) 175, 198, 271, 290, 296, 317
DdeI CTNAG 1 cut(s) 89
EciI GGCGGA 1 cut(s) 61
Eco130I CCWWGG 1 cut(s) 265
Eco24I GRGCYC 1 cut(s) 273
Eco47III AGCGCT 1 cut(s) 169
EcoO109I RGGNCCY 2 cut(s) 269, 270
EcoT14I CCWWGG 1 cut(s) 265
EcoT38I GRGCYC 1 cut(s) 273
ErhI CCWWGG 1 cut(s) 265
FaeI CATG 1 cut(s) 184
FaiI YATR 1 cut(s) 182
FaqI GGGAC 1 cut(s) 15
FatI CATG 1 cut(s) 180
Fnu4HI GCNGC 1 cut(s) 309
FriOI GRGCYC 1 cut(s) 273
Fsp4HI GCNGC 1 cut(s) 309
FspBI CTAG 1 cut(s) 266
GlaI GCGC 4 cut(s) 21, 23, 169, 244
GluI GCNGC 1 cut(s) 309
GsuI CTGGAG 2 cut(s) 185, 270
HaeII RGCGCY 2 cut(s) 171, 246
HaeIII GGCC 3 cut(s) 198, 271, 317
HapII CCGG 5 cut(s) 45, 52, 139, 163, 195
HgaI GACGC 2 cut(s) 144, 154
HhaI GCGC 4 cut(s) 22, 24, 170, 245
Hin1I GRCGYC 2 cut(s) 136, 146
Hin1II CATG 1 cut(s) 184
Hin6I GCGC 4 cut(s) 20, 22, 168, 243
HinP1I GCGC 4 cut(s) 20, 22, 168, 243
HinfI GANTC 2 cut(s) 232, 237
HpaII CCGG 5 cut(s) 45, 52, 139, 163, 195
HphI GGTGA 1 cut(s) 152
Hpy188III TCNNGA 1 cut(s) 229
Hpy99I CGWCG 2 cut(s) 138, 148
HpyAV CCTTC 1 cut(s) 78
HpyCH4III ACNGT 2 cut(s) 29, 79
HpyCH4V TGCA 2 cut(s) 4, 180
HpyF10VI GCNNNNNNNGC 3 cut(s) 99, 154, 314
HpyF3I CTNAG 1 cut(s) 89
Hsp92I GRCGYC 2 cut(s) 136, 146
Hsp92II CATG 1 cut(s) 184
HspAI GCGC 4 cut(s) 20, 22, 168, 243
LmnI GCTCC 2 cut(s) 104, 165
LweI GCATC 1 cut(s) 166
MaeI CTAG 1 cut(s) 266
MboII GAAGA 1 cut(s) 177
MhlI GDGCHC 1 cut(s) 273
MnlI CCTC 7 cut(s) 50, 72, 131, 209, 236, 288, 310
MspI CCGG 5 cut(s) 45, 52, 139, 163, 195
MvnI CGCG 1 cut(s) 22
MwoI GCNNNNNNNGC 3 cut(s) 99, 154, 314
NlaIII CATG 1 cut(s) 184
NlaIV GGNNCC 3 cut(s) 271, 272, 316
NmeAIII GCCGAG 1 cut(s) 151
NspI RCATGY 1 cut(s) 184
PaqCI CACCTGC 1 cut(s) 314
PauI GCGCGC 1 cut(s) 20
PfeI GAWTC 2 cut(s) 232, 237
PkrI GCNGC 1 cut(s) 310
PspN4I GGNNCC 3 cut(s) 271, 272, 316
PspOMI GGGCCC 1 cut(s) 269
PspPI GGNCC 3 cut(s) 269, 270, 315
PteI GCGCGC 1 cut(s) 20
SatI GCNGC 1 cut(s) 309
Sau96I GGNCC 3 cut(s) 269, 270, 315
SduI GDGCHC 1 cut(s) 273
SetI ASST 4 cut(s) 123, 280, 302, 328
SfaNI GCATC 1 cut(s) 166
SmlI CTYRAG 1 cut(s) 227
SmoI CTYRAG 1 cut(s) 227
SsiI CCGC 4 cut(s) 72, 102, 309, 321
SspMI CTAG 1 cut(s) 266
StyI CCWWGG 1 cut(s) 265
TaaI ACNGT 2 cut(s) 29, 79
TaqI TCGA 2 cut(s) 212, 235
TauI GCSGC 1 cut(s) 311
TfiI GAWTC 2 cut(s) 232, 237
XceI RCATGY 1 cut(s) 184
XmaJI CCTAGG 1 cut(s) 265
XspI CTAG 1 cut(s) 266
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.