Rroxscaffold_3G00234300

Signal recognition particle receptor subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0018936
Physical Location & Seq
Forward (+)
20607661 .. 20608045
385 bp
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UTR
Exon/CDS
Intron
Rroxscaffold_3G00234300.1

Sequence Viewer

Length: 282 bp
ATGTTAGAACAGTTGCTGATATTTACAAGAGGAGGATTAATCCTGTGGACTTGTAAAGAGCTTGGAAATGCTCTTAAAGGATCCCCCATCGACACATTGATCCGTTCCTGTCTTCTCGAGGAACGATCCGGTGCGGCATTCTATGATTACACTGCTCCAGGGGCAGCTTACACTCTCAAATGGACTTTCCATAATGAGCTTGGCCTCGTGTTCGTTGCTGTTTATCAGAAGATCCTCCATCTCTTCTCAGGAAGGAGGCCGAGGCTCGTGCTGAGGGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03060 map03060
Pfam Domains
Protein Families
SRP-alpha_N SRP54 SRP54_N

Protein Analysis

93

Amino Acids

10.5

Weight (kDa)

9.39

Isoelectric Point (pI)

49.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SRP-alpha_N PF04086 28 - 81 1.5e-23 Signal recognition particle, alpha subunit, N-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0018936)

Species Orthologous Gene IDs
pyrus_communis pycom15g13560
rosa_chinensis RchiOBHm_Chr7g0224901
rosa_multiflora Rmu_co8403257.1_g000002 Rmu_sc0000307.1_g000010 Rmu_ssc0000171.1_g000020
rosa_roxburghii Rroxscaffold_3G00234300 Rroxscaffold_6G00416220
rosa_rugosa Rorug05G0194100
rosa_wichuraiana Rw3G021850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 134
AclWI GGATC 5 cut(s) 75, 88, 94, 120, 226
AjnI CCWGG 1 cut(s) 157
AluBI AGCT 3 cut(s) 61, 167, 199
AluI AGCT 3 cut(s) 61, 167, 199
AlwI GGATC 5 cut(s) 75, 88, 94, 120, 226
AlwNI CAGNNNCTG 1 cut(s) 16
Ama87I CYCGRG 1 cut(s) 116
AoxI GGCC 2 cut(s) 202, 257
ApeKI GCWGC 1 cut(s) 164
AseI ATTAAT 1 cut(s) 38
AvaI CYCGRG 1 cut(s) 116
BamHI GGATCC 1 cut(s) 80
BauI CACGAG 2 cut(s) 206, 266
BbsI GAAGAC 1 cut(s) 104
BbvCI CCTCAGC 1 cut(s) 272
BbvI GCAGC 1 cut(s) 176
BccI CCATC 2 cut(s) 95, 246
BcgI CGANNNNNNTGC 1 cut(s) 250
BciT130I CCWGG 1 cut(s) 159
BisI GCNGC 2 cut(s) 135, 165
BlsI GCNGC 2 cut(s) 136, 166
Bme1390I CCNGG 1 cut(s) 159
BmeT110I CYCGRG 1 cut(s) 116
BmiI GGNNCC 1 cut(s) 82
BmrFI CCNGG 1 cut(s) 159
BpiI GAAGAC 1 cut(s) 104
BpmI CTGGAG 1 cut(s) 141
Bpu10I CCTNAGC 1 cut(s) 272
BsaJI CCNNGG 2 cut(s) 158, 260
BsaWI WCCGGW 1 cut(s) 128
BseBI CCWGG 1 cut(s) 159
BseDI CCNNGG 2 cut(s) 158, 260
BseMII CTCAG 2 cut(s) 261, 263
BseRI GAGGAG 1 cut(s) 45
BseXI GCAGC 1 cut(s) 176
BshFI GGCC 2 cut(s) 204, 259
BsiHKCI CYCGRG 1 cut(s) 116
BsiSI CCGG 1 cut(s) 129
BsmI GAATGC 1 cut(s) 137
BsnI GGCC 2 cut(s) 204, 259
BsoBI CYCGRG 1 cut(s) 116
Bsp143I GATC 4 cut(s) 80, 99, 125, 231
BspACI CCGC 1 cut(s) 134
BspANI GGCC 2 cut(s) 204, 259
BspCNI CTCAG 2 cut(s) 260, 264
BspLI GGNNCC 1 cut(s) 82
BspPI GGATC 5 cut(s) 75, 88, 94, 120, 226
BssECI CCNNGG 2 cut(s) 158, 260
BssMI GATC 4 cut(s) 80, 99, 125, 231
BssSI CACGAG 2 cut(s) 206, 266
Bst2BI CACGAG 2 cut(s) 206, 266
Bst2UI CCWGG 1 cut(s) 159
Bst4CI ACNGT 1 cut(s) 12
Bst6I CTCTTC 1 cut(s) 248
BstDEI CTNAG 2 cut(s) 247, 272
BstKTI GATC 4 cut(s) 83, 102, 128, 234
BstMBI GATC 4 cut(s) 80, 99, 125, 231
BstMWI GCNNNNNNNGC 1 cut(s) 161
BstNI CCWGG 1 cut(s) 159
BstSCI CCNGG 1 cut(s) 157
BstV1I GCAGC 1 cut(s) 176
BstV2I GAAGAC 1 cut(s) 104
BstX2I RGATCY 2 cut(s) 80, 231
BstYI RGATCY 2 cut(s) 80, 231
BsuRI GGCC 2 cut(s) 204, 259
BtsI GCAGTG 1 cut(s) 150
BtsIMutI CAGTG 1 cut(s) 150
CaiI CAGNNNCTG 1 cut(s) 16
CviJI RGCY 6 cut(s) 61, 167, 199, 204, 259, 265
CviKI_1 RGCY 6 cut(s) 61, 167, 199, 204, 259, 265
DdeI CTNAG 2 cut(s) 247, 272
DpnI GATC 4 cut(s) 82, 101, 127, 233
DpnII GATC 4 cut(s) 80, 99, 125, 231
Eam1104I CTCTTC 1 cut(s) 248
EarI CTCTTC 1 cut(s) 248
Eco88I CYCGRG 1 cut(s) 116
EcoRII CCWGG 1 cut(s) 157
FaiI YATR 2 cut(s) 144, 192
Fnu4HI GCNGC 2 cut(s) 135, 165
Fsp4HI GCNGC 2 cut(s) 135, 165
GluI GCNGC 2 cut(s) 135, 165
GsuI CTGGAG 1 cut(s) 141
HaeIII GGCC 2 cut(s) 204, 259
HapII CCGG 1 cut(s) 129
HpaII CCGG 1 cut(s) 129
Hpy166II GTNNAC 1 cut(s) 48
Hpy188I TCNGA 1 cut(s) 228
Hpy188III TCNNGA 2 cut(s) 116, 249
Hpy8I GTNNAC 1 cut(s) 48
HpyAV CCTTC 1 cut(s) 246
HpyCH4III ACNGT 1 cut(s) 12
HpyF10VI GCNNNNNNNGC 1 cut(s) 161
HpyF3I CTNAG 2 cut(s) 247, 272
Kzo9I GATC 4 cut(s) 80, 99, 125, 231
LmnI GCTCC 1 cut(s) 160
LpnPI CCDG 6 cut(s) 56, 121, 142, 144, 171, 234
Lsp1109I GCAGC 1 cut(s) 176
MalI GATC 4 cut(s) 82, 101, 127, 233
MboI GATC 4 cut(s) 80, 99, 125, 231
MboII GAAGA 3 cut(s) 104, 235, 241
MflI RGATCY 2 cut(s) 80, 231
MnlI CCTC 8 cut(s) 23, 26, 112, 215, 245, 249, 255, 267
MseI TTAA 2 cut(s) 38, 75
MspI CCGG 1 cut(s) 129
MspR9I CCNGG 1 cut(s) 159
Mva1269I GAATGC 1 cut(s) 137
MvaI CCWGG 1 cut(s) 159
MwoI GCNNNNNNNGC 1 cut(s) 161
NdeII GATC 4 cut(s) 80, 99, 125, 231
NlaIV GGNNCC 1 cut(s) 82
PaeR7I CTCGAG 1 cut(s) 116
PctI GAATGC 1 cut(s) 137
PkrI GCNGC 2 cut(s) 136, 166
PshBI ATTAAT 1 cut(s) 38
Psp6I CCWGG 1 cut(s) 157
PspGI CCWGG 1 cut(s) 157
PspN4I GGNNCC 1 cut(s) 82
PstNI CAGNNNCTG 1 cut(s) 16
PsuI RGATCY 2 cut(s) 80, 231
SaqAI TTAA 2 cut(s) 38, 75
SatI GCNGC 2 cut(s) 135, 165
Sau3AI GATC 4 cut(s) 80, 99, 125, 231
ScrFI CCNGG 1 cut(s) 159
SetI ASST 3 cut(s) 63, 169, 201
Sfr274I CTCGAG 1 cut(s) 116
SlaI CTCGAG 1 cut(s) 116
SmlI CTYRAG 1 cut(s) 116
SmoI CTYRAG 1 cut(s) 116
SsiI CCGC 1 cut(s) 134
StyD4I CCNGG 1 cut(s) 157
TaaI ACNGT 1 cut(s) 12
TaqI TCGA 2 cut(s) 90, 117
TauI GCSGC 1 cut(s) 137
Tru1I TTAA 2 cut(s) 38, 75
Tru9I TTAA 2 cut(s) 38, 75
TscAI CASTG 1 cut(s) 157
TseI GCWGC 1 cut(s) 164
TspGWI ACGGA 1 cut(s) 92
TspRI CASTG 1 cut(s) 157
VspI ATTAAT 1 cut(s) 38
XcmI CCANNNNNNNNNTGG 1 cut(s) 197
XhoI CTCGAG 1 cut(s) 116
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.