Rmu_sc0000307.1_g000010

Signal recognition particle receptor subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000307.1
OG0018936
Physical Location & Seq
Reverse (-)
53922 .. 57828
3907 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000307.1_g000010.1.cds

Sequence Viewer

Length: 1017 bp
atgttagaacagttactgatatttacaagaggaggattaatcctgtggacttgtaaagagcttggaaatgctcttaaaggatcccccatcgacacattgatccgttcctgtcttctcgaggaaagatccggtgcggcattctatgattacactgctccaggggctgcttacactctcaaatggactttccataatgagcttggcctcgtgttcgtggctgtttatcagaagatcctccatctcttgaaggaggccgaggcacctgctgatgagttgaagaagtcgaagcaggtgggcaagcctgtgagtaatggtaggaagcaagggcagctgcaaaagagtggacttggaagagagaagaagaataatgaaggtggtgatggtgatagtgtgaagggccgtaaattggagaatggaatatccaatggtggtcatgttgttgtcagagaatctaatgtaggtggtactgctaatggaaaagagaatacttttgatgtaaataagcttaaatctagatctaagaactccatctccggccaccacctggcaaaaaaaaccgccaccaccaatcgatccagcatccaaaaccaacctaagcccgagccttactgtcgacatgcacccctgccagcctctgcgcacgacaacccaaggctgcaacgccactgttgctcgaccctcaccggttcccagccatcccttcaccacactgccacagtcaatccactcagcaagcagagcgaagaaaaacccataaacctttccgtccgccgacgctccacaactcctttcgagcatgaccggagttctcacctctacatgtcttcgttctccaatctccaactcaaatcgagcttcaatacctccataaacgaagtcgaagccgcaccatcattcgaaaccccaaattctggacctccgactctgaccagagccgccgcacacgccgctgctggtgtgtcgaccaccatagctccaccgctcataatcactggatcttcaggccttcttgattag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03060 map03060
Pfam Domains
Protein Families
SRP-alpha_N SRP54 SRP54_N

Protein Analysis

338

Amino Acids

36.53

Weight (kDa)

9.55

Isoelectric Point (pI)

46.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018936)

Species Orthologous Gene IDs
pyrus_communis pycom15g13560
rosa_chinensis RchiOBHm_Chr7g0224901
rosa_multiflora Rmu_co8403257.1_g000002 Rmu_sc0000307.1_g000010 Rmu_ssc0000171.1_g000020
rosa_roxburghii Rroxscaffold_3G00234300 Rroxscaffold_6G00416220
rosa_rugosa Rorug05G0194100
rosa_wichuraiana Rw3G021850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 271, 280
Acc16I TGCGCA 1 cut(s) 639
Acc36I ACCTGC 2 cut(s) 271, 280
AccB1I GGYRCC 1 cut(s) 259
AccB7I CCANNNNNTGG 2 cut(s) 544, 911
AccBSI CCGCTC 1 cut(s) 982
AccI GTMKAC 2 cut(s) 613, 962
AciI CCGC 8 cut(s) 134, 558, 769, 885, 936, 939, 948, 980
AclWI GGATC 7 cut(s) 75, 88, 94, 120, 226, 567, 1003
AcoI YGGCCR 1 cut(s) 535
AcsI RAATTY 1 cut(s) 907
AcuI CTGAAG 1 cut(s) 984
AfaI GTAC 1 cut(s) 466
AfiI CCNNNNNNNGG 3 cut(s) 406, 544, 911
AflIII ACRYGT 1 cut(s) 819
AgeI ACCGGT 1 cut(s) 683
AgsI TTSAA 3 cut(s) 247, 277, 859
AjnI CCWGG 2 cut(s) 157, 543
AloI GAACNNNNNNTCC 2 cut(s) 515, 547
AluBI AGCT 6 cut(s) 61, 199, 331, 505, 855, 974
AluI AGCT 6 cut(s) 61, 199, 331, 505, 855, 974
AlwI GGATC 7 cut(s) 75, 88, 94, 120, 226, 567, 1003
AlwNI CAGNNNCTG 3 cut(s) 16, 164, 635
Ama87I CYCGRG 2 cut(s) 116, 599
AoxI GGCC 5 cut(s) 202, 252, 397, 535, 1003
ApeKI GCWGC 5 cut(s) 164, 328, 331, 655, 950
ApoI RAATTY 1 cut(s) 907
AseI ATTAAT 1 cut(s) 38
AsiGI ACCGGT 1 cut(s) 683
AspLEI GCGC 1 cut(s) 640
AspS9I GGNCC 2 cut(s) 397, 914
AsuHPI GGTGA 5 cut(s) 389, 395, 673, 695, 803
AsuII TTCGAA 1 cut(s) 897
AvaI CYCGRG 2 cut(s) 116, 599
AvaII GGWCC 1 cut(s) 914
BamHI GGATCC 1 cut(s) 80
BanI GGYRCC 1 cut(s) 259
BauI CACGAG 1 cut(s) 206
BbsI GAAGAC 2 cut(s) 104, 816
BbvI GCAGC 5 cut(s) 151, 318, 340, 642, 937
BccI CCATC 6 cut(s) 95, 246, 374, 536, 703, 898
BceAI ACGGC 1 cut(s) 384
BcgI CGANNNNNNTGC 2 cut(s) 245, 279
BciT130I CCWGG 2 cut(s) 159, 545
BfaI CTAG 1 cut(s) 513
BfuAI ACCTGC 2 cut(s) 271, 280
BglII AGATCT 1 cut(s) 515
Bme1390I CCNGG 2 cut(s) 159, 545
Bme18I GGWCC 1 cut(s) 914
BmeT110I CYCGRG 2 cut(s) 116, 599
BmgT120I GGNCC 2 cut(s) 397, 914
BmiI GGNNCC 3 cut(s) 82, 261, 688
BmrFI CCNGG 2 cut(s) 159, 545
BmsI GCATC 1 cut(s) 588
BpiI GAAGAC 2 cut(s) 104, 816
BpmI CTGGAG 1 cut(s) 141
Bpu10I CCTNAGC 1 cut(s) 594
Bpu14I TTCGAA 1 cut(s) 897
Bsa29I ATCGAT 1 cut(s) 571
BsaJI CCNNGG 3 cut(s) 158, 255, 650
BsaWI WCCGGW 3 cut(s) 128, 683, 801
BsaXI ACNNNNNCTCC 4 cut(s) 515, 545, 958, 988
Bsc4I CCNNNNNNNGG 3 cut(s) 406, 544, 911
Bse118I RCCGGY 1 cut(s) 683
Bse1I ACTGG 1 cut(s) 997
BseBI CCWGG 2 cut(s) 159, 545
BseCI ATCGAT 1 cut(s) 571
BseDI CCNNGG 3 cut(s) 158, 255, 650
BseGI GGATG 2 cut(s) 579, 695
BseLI CCNNNNNNNGG 3 cut(s) 406, 544, 911
BseMII CTCAG 1 cut(s) 742
BseNI ACTGG 1 cut(s) 997
BseRI GAGGAG 1 cut(s) 45
BseXI GCAGC 5 cut(s) 151, 318, 340, 642, 937
BseYI CCCAGC 1 cut(s) 690
BshFI GGCC 5 cut(s) 204, 254, 399, 537, 1005
BshNI GGYRCC 1 cut(s) 259
BshTI ACCGGT 1 cut(s) 683
BshVI ATCGAT 1 cut(s) 571
BsiHKCI CYCGRG 2 cut(s) 116, 599
BsiSI CCGG 4 cut(s) 129, 534, 684, 802
BslI CCNNNNNNNGG 3 cut(s) 406, 544, 911
BsmI GAATGC 1 cut(s) 137
BsnI GGCC 5 cut(s) 204, 254, 399, 537, 1005
BsoBI CYCGRG 2 cut(s) 116, 599
Bsp119I TTCGAA 1 cut(s) 897
Bsp143I GATC 7 cut(s) 80, 99, 125, 231, 515, 572, 995
BspACI CCGC 8 cut(s) 134, 558, 769, 885, 936, 939, 948, 980
BspANI GGCC 5 cut(s) 204, 254, 399, 537, 1005
BspCNI CTCAG 1 cut(s) 741
BspDI ATCGAT 1 cut(s) 571
BspLI GGNNCC 3 cut(s) 82, 261, 688
BspMI ACCTGC 2 cut(s) 271, 280
BspPI GGATC 7 cut(s) 75, 88, 94, 120, 226, 567, 1003
BspT104I TTCGAA 1 cut(s) 897
BspT107I GGYRCC 1 cut(s) 259
BsrBI CCGCTC 1 cut(s) 982
BsrFI RCCGGY 1 cut(s) 683
BsrI ACTGG 1 cut(s) 997
BssAI RCCGGY 1 cut(s) 683
BssECI CCNNGG 3 cut(s) 158, 255, 650
BssMI GATC 7 cut(s) 80, 99, 125, 231, 515, 572, 995
BssSI CACGAG 1 cut(s) 206
BssT1I CCWWGG 1 cut(s) 650
Bst2BI CACGAG 1 cut(s) 206
Bst2UI CCWGG 2 cut(s) 159, 545
Bst4CI ACNGT 4 cut(s) 12, 611, 668, 718
Bst6I CTCTTC 1 cut(s) 346
BstBI TTCGAA 1 cut(s) 897
BstC8I GCNNGC 3 cut(s) 299, 630, 734
BstDEI CTNAG 3 cut(s) 519, 594, 728
BstF5I GGATG 2 cut(s) 579, 695
BstHHI GCGC 1 cut(s) 640
BstKTI GATC 7 cut(s) 83, 102, 128, 234, 518, 575, 998
BstMBI GATC 7 cut(s) 80, 99, 125, 231, 515, 572, 995
BstMWI GCNNNNNNNGC 6 cut(s) 161, 328, 669, 738, 944, 947
BstNI CCWGG 2 cut(s) 159, 545
BstNSI RCATGY 2 cut(s) 620, 823
BstSCI CCNGG 2 cut(s) 157, 543
BstV1I GCAGC 5 cut(s) 151, 318, 340, 642, 937
BstV2I GAAGAC 2 cut(s) 104, 816
BstX2I RGATCY 5 cut(s) 80, 125, 231, 515, 995
BstYI RGATCY 5 cut(s) 80, 125, 231, 515, 995
Bsu15I ATCGAT 1 cut(s) 571
BsuRI GGCC 5 cut(s) 204, 254, 399, 537, 1005
BsuTUI ATCGAT 1 cut(s) 571
BtsCI GGATG 2 cut(s) 579, 695
BtsI GCAGTG 2 cut(s) 150, 708
BtsIMutI CAGTG 4 cut(s) 150, 664, 708, 990
BveI ACCTGC 2 cut(s) 271, 280
Cac8I GCNNGC 3 cut(s) 299, 630, 734
CaiI CAGNNNCTG 3 cut(s) 16, 164, 635
CfoI GCGC 1 cut(s) 640
Cfr10I RCCGGY 1 cut(s) 683
Cfr13I GGNCC 2 cut(s) 397, 914
ClaI ATCGAT 1 cut(s) 571
CseI GACGC 1 cut(s) 783
Csp6I GTAC 1 cut(s) 465
CspAI ACCGGT 1 cut(s) 683
CviAII CATG 4 cut(s) 434, 617, 797, 820
CviQI GTAC 1 cut(s) 465
DdeI CTNAG 3 cut(s) 519, 594, 728
DpnI GATC 7 cut(s) 82, 101, 127, 233, 517, 574, 997
DpnII GATC 7 cut(s) 80, 99, 125, 231, 515, 572, 995
EaeI YGGCCR 1 cut(s) 535
Eam1104I CTCTTC 1 cut(s) 346
EarI CTCTTC 1 cut(s) 346
EciI GGCGGA 1 cut(s) 758
Eco130I CCWWGG 1 cut(s) 650
Eco147I AGGCCT 1 cut(s) 1005
Eco47I GGWCC 1 cut(s) 914
Eco57I CTGAAG 1 cut(s) 984
Eco88I CYCGRG 2 cut(s) 116, 599
EcoRII CCWGG 2 cut(s) 157, 543
EcoT14I CCWWGG 1 cut(s) 650
ErhI CCWWGG 1 cut(s) 650
FaeI CATG 4 cut(s) 437, 620, 800, 823
FatI CATG 4 cut(s) 433, 616, 796, 819
FblI GTMKAC 2 cut(s) 613, 962
FokI GGATG 2 cut(s) 566, 682
FspBI CTAG 1 cut(s) 513
FspI TGCGCA 1 cut(s) 639
GlaI GCGC 1 cut(s) 639
GsaI CCCAGC 1 cut(s) 694
GsuI CTGGAG 1 cut(s) 141
HaeIII GGCC 5 cut(s) 204, 254, 399, 537, 1005
HapII CCGG 4 cut(s) 129, 534, 684, 802
HgaI GACGC 1 cut(s) 783
HhaI GCGC 1 cut(s) 640
Hin1II CATG 4 cut(s) 437, 620, 800, 823
Hin6I GCGC 1 cut(s) 638
HinP1I GCGC 1 cut(s) 638
HincII GTYRAC 2 cut(s) 614, 963
HindII GTYRAC 2 cut(s) 614, 963
HindIII AAGCTT 1 cut(s) 503
HinfI GANTC 2 cut(s) 449, 922
HpaII CCGG 4 cut(s) 129, 534, 684, 802
HphI GGTGA 5 cut(s) 389, 395, 673, 695, 803
Hpy166II GTNNAC 4 cut(s) 48, 344, 614, 963
Hpy188I TCNGA 4 cut(s) 228, 446, 921, 927
Hpy188III TCNNGA 5 cut(s) 116, 244, 513, 912, 1010
Hpy8I GTNNAC 4 cut(s) 48, 344, 614, 963
Hpy99I CGWCG 1 cut(s) 777
HpyAV CCTTC 5 cut(s) 241, 365, 388, 710, 1016
HpyCH4III ACNGT 4 cut(s) 12, 611, 668, 718
HpyCH4V TGCA 3 cut(s) 334, 620, 658
HpyF10VI GCNNNNNNNGC 6 cut(s) 161, 328, 669, 738, 944, 947
HpyF3I CTNAG 3 cut(s) 519, 594, 728
Hsp92II CATG 4 cut(s) 437, 620, 800, 823
HspAI GCGC 1 cut(s) 638
Kzo9I GATC 7 cut(s) 80, 99, 125, 231, 515, 572, 995
LmnI GCTCC 3 cut(s) 160, 782, 979
Lsp1109I GCAGC 5 cut(s) 151, 318, 340, 642, 937
LweI GCATC 1 cut(s) 588
MaeI CTAG 1 cut(s) 513
MaeIII GTNAC 1 cut(s) 12
MalI GATC 7 cut(s) 82, 101, 127, 233, 517, 574, 997
MbiI CCGCTC 1 cut(s) 982
MboI GATC 7 cut(s) 80, 99, 125, 231, 515, 572, 995
MboII GAAGA 9 cut(s) 104, 241, 289, 363, 370, 373, 755, 816, 990
MflI RGATCY 5 cut(s) 80, 125, 231, 515, 995
MluCI AATT 2 cut(s) 404, 907
MlyI GAGTC 1 cut(s) 916
MmeI TCCRAC 2 cut(s) 865, 944
MseI TTAA 3 cut(s) 38, 75, 507
MspA1I CMGCKG 2 cut(s) 331, 950
MspI CCGG 4 cut(s) 129, 534, 684, 802
MspR9I CCNGG 2 cut(s) 159, 545
Mva1269I GAATGC 1 cut(s) 137
MvaI CCWGG 2 cut(s) 159, 545
MwoI GCNNNNNNNGC 6 cut(s) 161, 328, 669, 738, 944, 947
NdeII GATC 7 cut(s) 80, 99, 125, 231, 515, 572, 995
NlaIII CATG 4 cut(s) 437, 620, 800, 823
NlaIV GGNNCC 3 cut(s) 82, 261, 688
NmeAIII GCCGAG 1 cut(s) 280
NsbI TGCGCA 1 cut(s) 639
NspI RCATGY 2 cut(s) 620, 823
NspV TTCGAA 1 cut(s) 897
PaeR7I CTCGAG 1 cut(s) 116
PaqCI CACCTGC 2 cut(s) 271, 280
PceI AGGCCT 1 cut(s) 1005
PciI ACATGT 1 cut(s) 819
PctI GAATGC 1 cut(s) 137
PfeI GAWTC 1 cut(s) 449
PflMI CCANNNNNTGG 2 cut(s) 544, 911
PinAI ACCGGT 1 cut(s) 683
PleI GAGTC 1 cut(s) 916
PpsI GAGTC 1 cut(s) 916
PscI ACATGT 1 cut(s) 819
PshBI ATTAAT 1 cut(s) 38
Psp6I CCWGG 2 cut(s) 157, 543
PspFI CCCAGC 1 cut(s) 690
PspGI CCWGG 2 cut(s) 157, 543
PspN4I GGNNCC 3 cut(s) 82, 261, 688
PspPI GGNCC 2 cut(s) 397, 914
PstNI CAGNNNCTG 3 cut(s) 16, 164, 635
PsuI RGATCY 5 cut(s) 80, 125, 231, 515, 995
PvuII CAGCTG 1 cut(s) 331
RsaI GTAC 1 cut(s) 466
RsaNI GTAC 1 cut(s) 465
SalI GTCGAC 2 cut(s) 612, 961
SaqAI TTAA 3 cut(s) 38, 75, 507
Sau3AI GATC 7 cut(s) 80, 99, 125, 231, 515, 572, 995
Sau96I GGNCC 2 cut(s) 397, 914
SchI GAGTC 1 cut(s) 916
ScrFI CCNGG 2 cut(s) 159, 545
SfaNI GCATC 1 cut(s) 588
Sfr274I CTCGAG 1 cut(s) 116
SfuI TTCGAA 1 cut(s) 897
SinI GGWCC 1 cut(s) 914
SlaI CTCGAG 1 cut(s) 116
SmlI CTYRAG 1 cut(s) 116
SmoI CTYRAG 1 cut(s) 116
Sse9I AATT 2 cut(s) 404, 907
SseBI AGGCCT 1 cut(s) 1005
SsiI CCGC 8 cut(s) 134, 558, 769, 885, 936, 939, 948, 980
SspMI CTAG 1 cut(s) 513
StuI AGGCCT 1 cut(s) 1005
StyD4I CCNGG 2 cut(s) 157, 543
StyI CCWWGG 1 cut(s) 650
TaaI ACNGT 4 cut(s) 12, 611, 668, 718
TasI AATT 2 cut(s) 404, 907
TauI GCSGC 5 cut(s) 137, 887, 938, 941, 950
TfiI GAWTC 1 cut(s) 449
Tru1I TTAA 3 cut(s) 38, 75, 507
Tru9I TTAA 3 cut(s) 38, 75, 507
TscAI CASTG 4 cut(s) 157, 671, 715, 997
TseI GCWGC 5 cut(s) 164, 328, 331, 655, 950
TspDTI ATGAA 1 cut(s) 384
TspGWI ACGGA 2 cut(s) 92, 754
TspRI CASTG 4 cut(s) 157, 671, 715, 997
Van91I CCANNNNNTGG 2 cut(s) 544, 911
VpaK11BI GGWCC 1 cut(s) 914
VspI ATTAAT 1 cut(s) 38
XapI RAATTY 1 cut(s) 907
XbaI TCTAGA 1 cut(s) 512
XceI RCATGY 2 cut(s) 620, 823
XcmI CCANNNNNNNNNTGG 1 cut(s) 197
XhoI CTCGAG 1 cut(s) 116
XmiI GTMKAC 2 cut(s) 613, 962
XspI CTAG 1 cut(s) 513
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.