Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0020429

Physical Location & Seq

Genomic Coordinates Forward (+)

11139703 .. 11141104

Gene Structure 1402 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g15970.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 261 bp

ATGGAGAGCAATATTAGTACCAGAGGAGTCTTTAGCGTCTCAATGTGCGGCCAAGAGCAGATTGAGCTCTCCAGAGACGGCAGCCACTACAGTCTCTCAACTGGGATTTTGCCTTCCCTCGGTGCAAGGTCGAGCAACCGACGTGTGAAACTCGGCAGGTTCATTGTCTCGCCGTACGACCGCCGCTACAGGGGAGACCTTTCTTGTTGTTCTGGTCATCTATACTGCTTGGGTGTCACCGTTCGAGTTTGGTTTCCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0005215 GO:0005216 GO:0005242 GO:0005244 GO:0005249 GO:0005261 GO:0005267 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0006813 GO:0006950 GO:0006970 GO:0007275 GO:0008150 GO:0008324 GO:0009414 GO:0009415 GO:0009628 GO:0009651 GO:0009653 GO:0009888 GO:0009987 GO:0010015 GO:0010035 GO:0010053 GO:0010054 GO:0010107 GO:0010119 GO:0015075 GO:0015077 GO:0015079 GO:0015267 GO:0015276 GO:0015318 GO:0015672 GO:0016020 GO:0016021 GO:0016049 GO:0021700 GO:0022622 GO:0022803 GO:0022832 GO:0022834 GO:0022836 GO:0022838 GO:0022839 GO:0022843 GO:0022857 GO:0022890 GO:0030001 GO:0030154 GO:0031224 GO:0031226 GO:0032501 GO:0032502 GO:0034220 GO:0040007 GO:0042221 GO:0042391 GO:0042802 GO:0044425 GO:0044459 GO:0044464 GO:0046873 GO:0048364 GO:0048468 GO:0048469 GO:0048588 GO:0048589 GO:0048731 GO:0048764 GO:0048765 GO:0048767 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0060560 GO:0065007 GO:0065008 GO:0071695 GO:0071804 GO:0071805 GO:0071944 GO:0080147 GO:0090333 GO:0090558 GO:0090627 GO:0098655 GO:0098660 GO:0098662 GO:0099094 GO:0099402 GO:1901700 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ank_2 Ank_4 Ion_trans KHA cNMP_binding

Protein Analysis

87

Amino Acids

9.6

Weight (kDa)

9.43

Isoelectric Point (pI)

65.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0020429)

Species	Orthologous Gene IDs
pyrus_communis	pycom02g03100 pycom15g15970
rosa_multiflora	Rmu_sc0004339.1_g000025 Rmu_sc0024200.1_g000001
rosa_samantha	Rh1DG004100 Rh4AG353800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	147
AciI	CCGC	3 cut(s)	48, 181, 184
AcoI	YGGCCR	1 cut(s)	49
AfaI	GTAC	2 cut(s)	19, 176
AfiI	CCNNNNNNNGG	2 cut(s)	119, 190
AflIII	ACRYGT	1 cut(s)	142
AjiI	CACGTC	1 cut(s)	143
AluBI	AGCT	1 cut(s)	67
AluI	AGCT	1 cut(s)	67
Alw21I	GWGCWC	1 cut(s)	69
Alw26I	GTCTC	5 cut(s)	43, 69, 98, 172, 189
AoxI	GGCC	1 cut(s)	49
ApeKI	GCWGC	1 cut(s)	81
AsuHPI	GGTGA	1 cut(s)	229
BanII	GRGCYC	1 cut(s)	69
Bbv12I	GWGCWC	1 cut(s)	69
BbvI	GCAGC	1 cut(s)	93
BceAI	ACGGC	2 cut(s)	94, 157
BcoDI	GTCTC	5 cut(s)	43, 69, 98, 172, 189
BfmI	CTRYAG	2 cut(s)	88, 187
BfuAI	ACCTGC	1 cut(s)	147
BisI	GCNGC	3 cut(s)	49, 82, 184
BlsI	GCNGC	3 cut(s)	50, 83, 185
BmgBI	CACGTC	1 cut(s)	143
BmrI	ACTGGG	1 cut(s)	111
BmuI	ACTGGG	1 cut(s)	111
BpmI	CTGGAG	1 cut(s)	55
BsaI	GGTCTC	1 cut(s)	189
BsaJI	CCNNGG	1 cut(s)	118
Bsc4I	CCNNNNNNNGG	2 cut(s)	119, 190
Bse1I	ACTGG	1 cut(s)	106
BseDI	CCNNGG	1 cut(s)	118
BseLI	CCNNNNNNNGG	2 cut(s)	119, 190
BseNI	ACTGG	1 cut(s)	106
BseRI	GAGGAG	1 cut(s)	39
BseXI	GCAGC	1 cut(s)	93
Bsh1285I	CGRYCG	1 cut(s)	181
BshFI	GGCC	1 cut(s)	51
BsiEI	CGRYCG	1 cut(s)	181
BsiHKAI	GWGCWC	1 cut(s)	69
BsiWI	CGTACG	1 cut(s)	174
BslI	CCNNNNNNNGG	2 cut(s)	119, 190
BsmAI	GTCTC	5 cut(s)	43, 69, 98, 172, 189
BsmBI	CGTCTC	2 cut(s)	43, 69
BsnI	GGCC	1 cut(s)	51
Bso31I	GGTCTC	1 cut(s)	189
Bsp1286I	GDGCHC	1 cut(s)	69
BspACI	CCGC	3 cut(s)	48, 181, 184
BspANI	GGCC	1 cut(s)	51
BspMI	ACCTGC	1 cut(s)	147
BspTNI	GGTCTC	1 cut(s)	189
BsrI	ACTGG	1 cut(s)	106
BssECI	CCNNGG	1 cut(s)	118
Bst4CI	ACNGT	2 cut(s)	92, 241
BstMAI	GTCTC	5 cut(s)	43, 69, 98, 172, 189
BstMCI	CGRYCG	1 cut(s)	181
BstMWI	GCNNNNNNNGC	1 cut(s)	64
BstSFI	CTRYAG	2 cut(s)	88, 187
BstV1I	GCAGC	1 cut(s)	93
BsuRI	GGCC	1 cut(s)	51
BtrI	CACGTC	1 cut(s)	143
BveI	ACCTGC	1 cut(s)	147
CseI	GACGC	1 cut(s)	25
Csp6I	GTAC	2 cut(s)	18, 175
CviJI	RGCY	3 cut(s)	51, 67, 84
CviKI_1	RGCY	3 cut(s)	51, 67, 84
CviQI	GTAC	2 cut(s)	18, 175
EaeI	YGGCCR	1 cut(s)	49
Ecl136II	GAGCTC	1 cut(s)	67
Eco24I	GRGCYC	1 cut(s)	69
Eco31I	GGTCTC	1 cut(s)	189
Eco53kI	GAGCTC	1 cut(s)	67
EcoICRI	GAGCTC	1 cut(s)	67
EcoT38I	GRGCYC	1 cut(s)	69
Esp3I	CGTCTC	2 cut(s)	43, 69
FaiI	YATR	1 cut(s)	223
Fnu4HI	GCNGC	3 cut(s)	49, 82, 184
FriOI	GRGCYC	1 cut(s)	69
Fsp4HI	GCNGC	3 cut(s)	49, 82, 184
GluI	GCNGC	3 cut(s)	49, 82, 184
GsuI	CTGGAG	1 cut(s)	55
HaeIII	GGCC	1 cut(s)	51
HgaI	GACGC	1 cut(s)	25
HinfI	GANTC	1 cut(s)	27
HphI	GGTGA	1 cut(s)	229
Hpy188III	TCNNGA	1 cut(s)	72
Hpy99I	CGWCG	1 cut(s)	144
HpyAV	CCTTC	1 cut(s)	123
HpyCH4III	ACNGT	2 cut(s)	92, 241
HpyCH4IV	ACGT	1 cut(s)	142
HpyCH4V	TGCA	1 cut(s)	125
HpyF10VI	GCNNNNNNNGC	1 cut(s)	64
HpySE526I	ACGT	1 cut(s)	142
LpnPI	CCDG	6 cut(s)	34, 85, 87, 142, 175, 198
Lsp1109I	GCAGC	1 cut(s)	93
MaeII	ACGT	1 cut(s)	142
MaeIII	GTNAC	1 cut(s)	235
MhlI	GDGCHC	1 cut(s)	69
MlyI	GAGTC	1 cut(s)	36
MnlI	CCTC	2 cut(s)	17, 128
MseI	TTAA	1 cut(s)	259
MwoI	GCNNNNNNNGC	1 cut(s)	64
NmeAIII	GCCGAG	1 cut(s)	132
NmuCI	GTSAC	1 cut(s)	235
Pfl23II	CGTACG	1 cut(s)	174
PkrI	GCNGC	3 cut(s)	50, 83, 185
PleI	GAGTC	1 cut(s)	35
PpsI	GAGTC	1 cut(s)	35
Psp124BI	GAGCTC	1 cut(s)	69
PspLI	CGTACG	1 cut(s)	174
RsaI	GTAC	2 cut(s)	19, 176
RsaNI	GTAC	2 cut(s)	18, 175
SacI	GAGCTC	1 cut(s)	69
SaqAI	TTAA	1 cut(s)	259
SatI	GCNGC	3 cut(s)	49, 82, 184
SchI	GAGTC	1 cut(s)	36
SduI	GDGCHC	1 cut(s)	69
SetI	ASST	5 cut(s)	69, 131, 145, 161, 201
SfcI	CTRYAG	2 cut(s)	88, 187
SsiI	CCGC	3 cut(s)	48, 181, 184
SspI	AATATT	1 cut(s)	13
SstI	GAGCTC	1 cut(s)	69
TaaI	ACNGT	2 cut(s)	92, 241
TaiI	ACGT	1 cut(s)	145
TaqI	TCGA	2 cut(s)	131, 244
TauI	GCSGC	2 cut(s)	51, 186
Tru1I	TTAA	1 cut(s)	259
Tru9I	TTAA	1 cut(s)	259
TseFI	GTSAC	1 cut(s)	235
TseI	GCWGC	1 cut(s)	81
Tsp45I	GTSAC	1 cut(s)	235
TspDTI	ATGAA	1 cut(s)	151

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.