Rh4AG353800

60S ribosomal Protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0020429
Physical Location & Seq
Reverse (-)
66278142 .. 66295475
17334 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG353800.1

Sequence Viewer

Length: 240 bp
ATGGTTCTCAAGACTGAGCTTTGCCGCTTCAGTGGCGCCAAGATCTACTCAGGTAGGGGACTACGGGCATCAGATTCATCCGCTCCGATTCTCAGATATGCCTGCAATTTGCTTCAACAAGGAATGAAACAATTAATAATGAACTCAGAGACCCGTGAAGCTAAAGCGTTGGAGAAGCCGGTGTCCGCCTCATCAAAACGGCAGCGTTTCGGTTTCAGATCTCACATTCCGATTCTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_L24e

Protein Analysis

79

Amino Acids

8.84

Weight (kDa)

10.44

Isoelectric Point (pI)

65.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0020429)

Species Orthologous Gene IDs
pyrus_communis pycom02g03100 pycom15g15970
rosa_multiflora Rmu_sc0004339.1_g000025 Rmu_sc0024200.1_g000001
rosa_samantha Rh1DG004100 Rh4AG353800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 35
AccBSI CCGCTC 1 cut(s) 83
AciI CCGC 3 cut(s) 25, 81, 186
AcuI CTGAAG 1 cut(s) 13
AcyI GRCGYC 1 cut(s) 36
AgsI TTSAA 1 cut(s) 116
AluBI AGCT 2 cut(s) 19, 161
AluI AGCT 2 cut(s) 19, 161
Alw26I GTCTC 1 cut(s) 143
ApeKI GCWGC 1 cut(s) 202
AseI ATTAAT 1 cut(s) 134
AspLEI GCGC 1 cut(s) 38
BanI GGYRCC 1 cut(s) 35
BbvI GCAGC 1 cut(s) 214
BceAI ACGGC 1 cut(s) 215
BcoDI GTCTC 1 cut(s) 143
BfoI RGCGCY 1 cut(s) 39
BglII AGATCT 2 cut(s) 42, 218
BisI GCNGC 2 cut(s) 25, 203
BlsI GCNGC 2 cut(s) 26, 204
BmiI GGNNCC 1 cut(s) 37
BmsI GCATC 1 cut(s) 77
BsaHI GRCGYC 1 cut(s) 36
BsaI GGTCTC 1 cut(s) 143
Bse118I RCCGGY 1 cut(s) 178
BseGI GGATG 1 cut(s) 77
BseMII CTCAG 4 cut(s) 6, 63, 106, 159
BseXI GCAGC 1 cut(s) 214
BshNI GGYRCC 1 cut(s) 35
BsiSI CCGG 1 cut(s) 179
BslFI GGGAC 1 cut(s) 72
BsmAI GTCTC 1 cut(s) 143
BsmFI GGGAC 1 cut(s) 72
Bso31I GGTCTC 1 cut(s) 143
Bsp143I GATC 2 cut(s) 42, 218
BspACI CCGC 3 cut(s) 25, 81, 186
BspCNI CTCAG 4 cut(s) 7, 62, 105, 158
BspLI GGNNCC 1 cut(s) 37
BspT107I GGYRCC 1 cut(s) 35
BspTNI GGTCTC 1 cut(s) 143
BsrBI CCGCTC 1 cut(s) 83
BsrFI RCCGGY 1 cut(s) 178
BssAI RCCGGY 1 cut(s) 178
BssMI GATC 2 cut(s) 42, 218
BssNI GRCGYC 1 cut(s) 36
BstACI GRCGYC 1 cut(s) 36
BstC8I GCNNGC 1 cut(s) 103
BstDEI CTNAG 4 cut(s) 15, 49, 92, 145
BstF5I GGATG 1 cut(s) 77
BstH2I RGCGCY 1 cut(s) 39
BstHHI GCGC 1 cut(s) 38
BstKTI GATC 2 cut(s) 45, 221
BstMAI GTCTC 1 cut(s) 143
BstMBI GATC 2 cut(s) 42, 218
BstMWI GCNNNNNNNGC 1 cut(s) 33
BstV1I GCAGC 1 cut(s) 214
BstX2I RGATCY 2 cut(s) 42, 218
BstYI RGATCY 2 cut(s) 42, 218
BtsCI GGATG 1 cut(s) 77
BtsIMutI CAGTG 1 cut(s) 37
Cac8I GCNNGC 1 cut(s) 103
CfoI GCGC 1 cut(s) 38
Cfr10I RCCGGY 1 cut(s) 178
CviJI RGCY 3 cut(s) 19, 161, 178
CviKI_1 RGCY 3 cut(s) 19, 161, 178
DdeI CTNAG 4 cut(s) 15, 49, 92, 145
DinI GGCGCC 1 cut(s) 37
DpnI GATC 2 cut(s) 44, 220
DpnII GATC 2 cut(s) 42, 218
EciI GGCGGA 1 cut(s) 175
Eco31I GGTCTC 1 cut(s) 143
Eco57I CTGAAG 1 cut(s) 13
EgeI GGCGCC 1 cut(s) 37
EheI GGCGCC 1 cut(s) 37
FaiI YATR 1 cut(s) 99
FaqI GGGAC 1 cut(s) 72
Fnu4HI GCNGC 2 cut(s) 25, 203
FokI GGATG 1 cut(s) 64
Fsp4HI GCNGC 2 cut(s) 25, 203
GlaI GCGC 1 cut(s) 37
GluI GCNGC 2 cut(s) 25, 203
HaeII RGCGCY 1 cut(s) 39
HapII CCGG 1 cut(s) 179
HhaI GCGC 1 cut(s) 38
Hin1I GRCGYC 1 cut(s) 36
Hin6I GCGC 1 cut(s) 36
HinP1I GCGC 1 cut(s) 36
HinfI GANTC 3 cut(s) 74, 88, 232
HpaII CCGG 1 cut(s) 179
Hpy188I TCNGA 6 cut(s) 73, 87, 95, 148, 218, 231
Hpy188III TCNNGA 1 cut(s) 10
HpyCH4V TGCA 1 cut(s) 105
HpyF10VI GCNNNNNNNGC 1 cut(s) 33
HpyF3I CTNAG 4 cut(s) 15, 49, 92, 145
Hsp92I GRCGYC 1 cut(s) 36
HspAI GCGC 1 cut(s) 36
KasI GGCGCC 1 cut(s) 35
Kzo9I GATC 2 cut(s) 42, 218
LmnI GCTCC 1 cut(s) 88
LpnPI CCDG 3 cut(s) 36, 115, 192
Lsp1109I GCAGC 1 cut(s) 214
LweI GCATC 1 cut(s) 77
MalI GATC 2 cut(s) 44, 220
MbiI CCGCTC 1 cut(s) 83
MboI GATC 2 cut(s) 42, 218
MflI RGATCY 2 cut(s) 42, 218
MluCI AATT 2 cut(s) 106, 131
Mly113I GGCGCC 1 cut(s) 36
MmeI TCCRAC 1 cut(s) 150
MnlI CCTC 1 cut(s) 199
MseI TTAA 1 cut(s) 134
MspI CCGG 1 cut(s) 179
MwoI GCNNNNNNNGC 1 cut(s) 33
NarI GGCGCC 1 cut(s) 36
NdeII GATC 2 cut(s) 42, 218
NlaIV GGNNCC 1 cut(s) 37
PfeI GAWTC 3 cut(s) 74, 88, 232
PkrI GCNGC 2 cut(s) 26, 204
PluTI GGCGCC 1 cut(s) 39
PshBI ATTAAT 1 cut(s) 134
PspN4I GGNNCC 1 cut(s) 37
PsuI RGATCY 2 cut(s) 42, 218
SaqAI TTAA 1 cut(s) 134
SatI GCNGC 2 cut(s) 25, 203
Sau3AI GATC 2 cut(s) 42, 218
SetI ASST 3 cut(s) 21, 55, 163
SfaNI GCATC 1 cut(s) 77
SfoI GGCGCC 1 cut(s) 37
SgeI CNNG 9 cut(s) 22, 52, 63, 77, 114, 131, 165, 167, 191
SmlI CTYRAG 1 cut(s) 8
SmoI CTYRAG 1 cut(s) 8
Sse9I AATT 2 cut(s) 106, 131
SsiI CCGC 3 cut(s) 25, 81, 186
SspDI GGCGCC 1 cut(s) 35
TasI AATT 2 cut(s) 106, 131
TauI GCSGC 1 cut(s) 27
TfiI GAWTC 3 cut(s) 74, 88, 232
Tru1I TTAA 1 cut(s) 134
Tru9I TTAA 1 cut(s) 134
TscAI CASTG 1 cut(s) 37
TseI GCWGC 1 cut(s) 202
TspDTI ATGAA 3 cut(s) 66, 140, 155
TspRI CASTG 1 cut(s) 37
VspI ATTAAT 1 cut(s) 134
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.