Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0024200.1

Orthogroup ID

OG0020429

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 1091

Gene Structure 1091 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0024200.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 170 bp

atggcgtttactggtgtttcaatgtgcggccaagagcagctagacttgtccagagacggcagccactacagtctctccaccggaatactgccgtcgctcggcgccaggtctagtaatcggagagtcaagctcagccggtttattgtttcgccttacgaccggcgatacag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0005215 GO:0005216 GO:0005242 GO:0005244 GO:0005249 GO:0005261 GO:0005267 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0006813 GO:0006950 GO:0006970 GO:0007275 GO:0008150 GO:0008324 GO:0009414 GO:0009415 GO:0009628 GO:0009651 GO:0009653 GO:0009888 GO:0009987 GO:0010015 GO:0010035 GO:0010053 GO:0010054 GO:0010107 GO:0010119 GO:0015075 GO:0015077 GO:0015079 GO:0015267 GO:0015276 GO:0015318 GO:0015672 GO:0016020 GO:0016021 GO:0016049 GO:0021700 GO:0022622 GO:0022803 GO:0022832 GO:0022834 GO:0022836 GO:0022838 GO:0022839 GO:0022843 GO:0022857 GO:0022890 GO:0030001 GO:0030154 GO:0031224 GO:0031226 GO:0032501 GO:0032502 GO:0034220 GO:0040007 GO:0042221 GO:0042391 GO:0042802 GO:0044425 GO:0044459 GO:0044464 GO:0046873 GO:0048364 GO:0048468 GO:0048469 GO:0048588 GO:0048589 GO:0048731 GO:0048764 GO:0048765 GO:0048767 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0060560 GO:0065007 GO:0065008 GO:0071695 GO:0071804 GO:0071805 GO:0071944 GO:0080147 GO:0090333 GO:0090558 GO:0090627 GO:0098655 GO:0098660 GO:0098662 GO:0099094 GO:0099402 GO:1901700 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ank_2 Ank_4 Ion_trans KHA cNMP_binding

Protein Analysis

56

Amino Acids

6.27

Weight (kDa)

10.01

Isoelectric Point (pI)

75.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0020429)

Species	Orthologous Gene IDs
pyrus_communis	pycom02g03100 pycom15g15970
rosa_multiflora	Rmu_sc0004339.1_g000025 Rmu_sc0024200.1_g000001
rosa_samantha	Rh1DG004100 Rh4AG353800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	101
AciI	CCGC	1 cut(s)	27
AcoI	YGGCCR	1 cut(s)	28
AcyI	GRCGYC	1 cut(s)	102
AfiI	CCNNNNNNNGG	1 cut(s)	98
AgsI	TTSAA	1 cut(s)	21
AjnI	CCWGG	1 cut(s)	104
AluBI	AGCT	2 cut(s)	40, 130
AluI	AGCT	2 cut(s)	40, 130
Alw26I	GTCTC	2 cut(s)	48, 77
AoxI	GGCC	1 cut(s)	28
ApeKI	GCWGC	2 cut(s)	37, 60
AspLEI	GCGC	1 cut(s)	104
BanI	GGYRCC	1 cut(s)	101
BbvI	GCAGC	2 cut(s)	49, 72
BceAI	ACGGC	2 cut(s)	73, 76
BciT130I	CCWGG	1 cut(s)	106
BcoDI	GTCTC	2 cut(s)	48, 77
BfaI	CTAG	2 cut(s)	41, 111
BfmI	CTRYAG	1 cut(s)	67
BfoI	RGCGCY	1 cut(s)	105
BisI	GCNGC	3 cut(s)	28, 38, 61
BlpI	GCTNAGC	1 cut(s)	131
BlsI	GCNGC	3 cut(s)	29, 39, 62
Bme1390I	CCNGG	1 cut(s)	106
BmiI	GGNNCC	1 cut(s)	103
BmrFI	CCNGG	1 cut(s)	106
BplI	GAGNNNNNCTC	2 cut(s)	114, 146
Bpu1102I	GCTNAGC	1 cut(s)	131
BsaHI	GRCGYC	1 cut(s)	102
BsaWI	WCCGGW	1 cut(s)	80
BsaXI	ACNNNNNCTCC	2 cut(s)	59, 89
Bsc4I	CCNNNNNNNGG	1 cut(s)	98
Bse118I	RCCGGY	2 cut(s)	135, 159
Bse1I	ACTGG	1 cut(s)	16
BseBI	CCWGG	1 cut(s)	106
BseLI	CCNNNNNNNGG	1 cut(s)	98
BseMII	CTCAG	1 cut(s)	145
BseNI	ACTGG	1 cut(s)	16
BseXI	GCAGC	2 cut(s)	49, 72
Bsh1285I	CGRYCG	1 cut(s)	160
BshFI	GGCC	1 cut(s)	30
BshNI	GGYRCC	1 cut(s)	101
BsiEI	CGRYCG	1 cut(s)	160
BsiSI	CCGG	3 cut(s)	81, 136, 160
BslI	CCNNNNNNNGG	1 cut(s)	98
BsmAI	GTCTC	2 cut(s)	48, 77
BsmBI	CGTCTC	1 cut(s)	48
BsnI	GGCC	1 cut(s)	30
Bsp1720I	GCTNAGC	1 cut(s)	131
BspACI	CCGC	1 cut(s)	27
BspANI	GGCC	1 cut(s)	30
BspCNI	CTCAG	1 cut(s)	144
BspLI	GGNNCC	1 cut(s)	103
BspT107I	GGYRCC	1 cut(s)	101
BsrFI	RCCGGY	2 cut(s)	135, 159
BsrI	ACTGG	1 cut(s)	16
BssAI	RCCGGY	2 cut(s)	135, 159
BssNI	GRCGYC	1 cut(s)	102
Bst2UI	CCWGG	1 cut(s)	106
Bst4CI	ACNGT	1 cut(s)	71
BstACI	GRCGYC	1 cut(s)	102
BstDEI	CTNAG	1 cut(s)	131
BstH2I	RGCGCY	1 cut(s)	105
BstHHI	GCGC	1 cut(s)	104
BstMAI	GTCTC	2 cut(s)	48, 77
BstMCI	CGRYCG	1 cut(s)	160
BstNI	CCWGG	1 cut(s)	106
BstSCI	CCNGG	1 cut(s)	104
BstSFI	CTRYAG	1 cut(s)	67
BstV1I	GCAGC	2 cut(s)	49, 72
BsuRI	GGCC	1 cut(s)	30
CfoI	GCGC	1 cut(s)	104
Cfr10I	RCCGGY	2 cut(s)	135, 159
CviJI	RGCY	5 cut(s)	30, 40, 63, 130, 135
CviKI_1	RGCY	5 cut(s)	30, 40, 63, 130, 135
DdeI	CTNAG	1 cut(s)	131
DinI	GGCGCC	1 cut(s)	103
EaeI	YGGCCR	1 cut(s)	28
EcoRII	CCWGG	1 cut(s)	104
EgeI	GGCGCC	1 cut(s)	103
EheI	GGCGCC	1 cut(s)	103
Esp3I	CGTCTC	1 cut(s)	48
Fnu4HI	GCNGC	3 cut(s)	28, 38, 61
Fsp4HI	GCNGC	3 cut(s)	28, 38, 61
FspBI	CTAG	2 cut(s)	41, 111
GlaI	GCGC	1 cut(s)	103
GluI	GCNGC	3 cut(s)	28, 38, 61
HaeII	RGCGCY	1 cut(s)	105
HaeIII	GGCC	1 cut(s)	30
HapII	CCGG	3 cut(s)	81, 136, 160
HhaI	GCGC	1 cut(s)	104
Hin1I	GRCGYC	1 cut(s)	102
Hin6I	GCGC	1 cut(s)	102
HinP1I	GCGC	1 cut(s)	102
HinfI	GANTC	1 cut(s)	123
HpaII	CCGG	3 cut(s)	81, 136, 160
Hpy166II	GTNNAC	1 cut(s)	9
Hpy188I	TCNGA	1 cut(s)	120
Hpy188III	TCNNGA	1 cut(s)	51
Hpy8I	GTNNAC	1 cut(s)	9
Hpy99I	CGWCG	1 cut(s)	97
HpyCH4III	ACNGT	1 cut(s)	71
HpyF3I	CTNAG	1 cut(s)	131
Hsp92I	GRCGYC	1 cut(s)	102
HspAI	GCGC	1 cut(s)	102
KasI	GGCGCC	1 cut(s)	101
LpnPI	CCDG	5 cut(s)	64, 91, 94, 118, 149
Lsp1109I	GCAGC	2 cut(s)	49, 72
MaeI	CTAG	2 cut(s)	41, 111
Mly113I	GGCGCC	1 cut(s)	102
MlyI	GAGTC	1 cut(s)	132
MspI	CCGG	3 cut(s)	81, 136, 160
MspR9I	CCNGG	1 cut(s)	106
MvaI	CCWGG	1 cut(s)	106
NarI	GGCGCC	1 cut(s)	102
NlaIV	GGNNCC	1 cut(s)	103
NmeAIII	GCCGAG	1 cut(s)	78
PkrI	GCNGC	3 cut(s)	29, 39, 62
PleI	GAGTC	1 cut(s)	131
PluTI	GGCGCC	1 cut(s)	105
PpsI	GAGTC	1 cut(s)	131
Psp6I	CCWGG	1 cut(s)	104
PspGI	CCWGG	1 cut(s)	104
PspN4I	GGNNCC	1 cut(s)	103
SatI	GCNGC	3 cut(s)	28, 38, 61
SchI	GAGTC	1 cut(s)	132
ScrFI	CCNGG	1 cut(s)	106
SetI	ASST	3 cut(s)	42, 110, 132
SfcI	CTRYAG	1 cut(s)	67
SfoI	GGCGCC	1 cut(s)	103
SsiI	CCGC	1 cut(s)	27
SspDI	GGCGCC	1 cut(s)	101
SspMI	CTAG	2 cut(s)	41, 111
StyD4I	CCNGG	1 cut(s)	104
TaaI	ACNGT	1 cut(s)	71
TauI	GCSGC	1 cut(s)	30
TseI	GCWGC	2 cut(s)	37, 60
XspI	CTAG	2 cut(s)	41, 111

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.