Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004339.1

Orthogroup ID

OG0020429

Physical Location & Seq

Genomic Coordinates Reverse (-)

91189 .. 92562

Gene Structure 1374 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004339.1_g000025.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 330 bp

atggcgtttactggtgtttcaatgtgcggccaagagcagctagacttgtccagagacggcagccactacagtctctccaccggaatactgccgtcgctcggcgccaggtctagtaatcggagagtcaagctcagccggtttattgtttcgccttacgaccggcgatacagattgtttgctctgaaccgaggaacggagcccaagcaagcagcagccatggttgtcaagactgagctttgcggcttcagtgccgccgagatctactcaggtaggggactacgaacatcagattcatcctctctgattctcaggttaaacaccaaagcctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0005215 GO:0005216 GO:0005242 GO:0005244 GO:0005249 GO:0005261 GO:0005267 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0006813 GO:0006950 GO:0006970 GO:0007275 GO:0008150 GO:0008324 GO:0009414 GO:0009415 GO:0009628 GO:0009651 GO:0009653 GO:0009888 GO:0009987 GO:0010015 GO:0010035 GO:0010053 GO:0010054 GO:0010107 GO:0010119 GO:0015075 GO:0015077 GO:0015079 GO:0015267 GO:0015276 GO:0015318 GO:0015672 GO:0016020 GO:0016021 GO:0016049 GO:0021700 GO:0022622 GO:0022803 GO:0022832 GO:0022834 GO:0022836 GO:0022838 GO:0022839 GO:0022843 GO:0022857 GO:0022890 GO:0030001 GO:0030154 GO:0031224 GO:0031226 GO:0032501 GO:0032502 GO:0034220 GO:0040007 GO:0042221 GO:0042391 GO:0042802 GO:0044425 GO:0044459 GO:0044464 GO:0046873 GO:0048364 GO:0048468 GO:0048469 GO:0048588 GO:0048589 GO:0048731 GO:0048764 GO:0048765 GO:0048767 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0060560 GO:0065007 GO:0065008 GO:0071695 GO:0071804 GO:0071805 GO:0071944 GO:0080147 GO:0090333 GO:0090558 GO:0090627 GO:0098655 GO:0098660 GO:0098662 GO:0099094 GO:0099402 GO:1901700 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ank_2 Ank_4 Ion_trans KHA cNMP_binding

Protein Analysis

109

Amino Acids

11.95

Weight (kDa)

10.21

Isoelectric Point (pI)

58.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0020429)

Species	Orthologous Gene IDs
pyrus_communis	pycom02g03100 pycom15g15970
rosa_multiflora	Rmu_sc0004339.1_g000025 Rmu_sc0024200.1_g000001
rosa_samantha	Rh1DG004100 Rh4AG353800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	101
AciI	CCGC	3 cut(s)	27, 240, 252
AcoI	YGGCCR	1 cut(s)	28
AcuI	CTGAAG	1 cut(s)	229
AcyI	GRCGYC	1 cut(s)	102
AfiI	CCNNNNNNNGG	2 cut(s)	98, 193
AgsI	TTSAA	1 cut(s)	21
AjnI	CCWGG	1 cut(s)	104
AluBI	AGCT	3 cut(s)	40, 130, 235
AluI	AGCT	3 cut(s)	40, 130, 235
Alw26I	GTCTC	2 cut(s)	48, 77
AoxI	GGCC	1 cut(s)	28
ApeKI	GCWGC	4 cut(s)	37, 60, 209, 212
AspLEI	GCGC	1 cut(s)	104
BanI	GGYRCC	1 cut(s)	101
BanII	GRGCYC	1 cut(s)	201
BbvI	GCAGC	4 cut(s)	49, 72, 221, 224
BceAI	ACGGC	2 cut(s)	73, 76
BciT130I	CCWGG	1 cut(s)	106
BcoDI	GTCTC	2 cut(s)	48, 77
BfaI	CTAG	2 cut(s)	41, 111
BfmI	CTRYAG	1 cut(s)	67
BfoI	RGCGCY	1 cut(s)	105
BglII	AGATCT	1 cut(s)	258
BisI	GCNGC	7 cut(s)	28, 38, 61, 210, 213, 241, 252
BlpI	GCTNAGC	1 cut(s)	131
BlsI	GCNGC	7 cut(s)	29, 39, 62, 211, 214, 242, 253
Bme1390I	CCNGG	1 cut(s)	106
BmiI	GGNNCC	2 cut(s)	103, 198
BmrFI	CCNGG	1 cut(s)	106
BplI	GAGNNNNNCTC	4 cut(s)	114, 146, 248, 280
Bpu1102I	GCTNAGC	1 cut(s)	131
BsaHI	GRCGYC	1 cut(s)	102
BsaJI	CCNNGG	2 cut(s)	187, 216
BsaWI	WCCGGW	1 cut(s)	80
BsaXI	ACNNNNNCTCC	2 cut(s)	59, 89
Bsc4I	CCNNNNNNNGG	2 cut(s)	98, 193
Bse118I	RCCGGY	2 cut(s)	135, 159
Bse1I	ACTGG	1 cut(s)	16
BseBI	CCWGG	1 cut(s)	106
BseDI	CCNNGG	2 cut(s)	187, 216
BseGI	GGATG	1 cut(s)	293
BseLI	CCNNNNNNNGG	2 cut(s)	98, 193
BseMII	CTCAG	4 cut(s)	145, 222, 279, 322
BseNI	ACTGG	1 cut(s)	16
BseXI	GCAGC	4 cut(s)	49, 72, 221, 224
Bsh1285I	CGRYCG	1 cut(s)	160
BshFI	GGCC	1 cut(s)	30
BshNI	GGYRCC	1 cut(s)	101
BsiEI	CGRYCG	1 cut(s)	160
BsiSI	CCGG	3 cut(s)	81, 136, 160
BslFI	GGGAC	1 cut(s)	288
BslI	CCNNNNNNNGG	2 cut(s)	98, 193
BsmAI	GTCTC	2 cut(s)	48, 77
BsmBI	CGTCTC	1 cut(s)	48
BsmFI	GGGAC	1 cut(s)	288
BsnI	GGCC	1 cut(s)	30
Bsp1286I	GDGCHC	1 cut(s)	201
Bsp143I	GATC	1 cut(s)	258
Bsp1720I	GCTNAGC	1 cut(s)	131
Bsp19I	CCATGG	1 cut(s)	216
BspACI	CCGC	3 cut(s)	27, 240, 252
BspANI	GGCC	1 cut(s)	30
BspCNI	CTCAG	4 cut(s)	144, 223, 278, 321
BspLI	GGNNCC	2 cut(s)	103, 198
BspT107I	GGYRCC	1 cut(s)	101
BsrFI	RCCGGY	2 cut(s)	135, 159
BsrI	ACTGG	1 cut(s)	16
BssAI	RCCGGY	2 cut(s)	135, 159
BssECI	CCNNGG	2 cut(s)	187, 216
BssMI	GATC	1 cut(s)	258
BssNI	GRCGYC	1 cut(s)	102
BssT1I	CCWWGG	1 cut(s)	216
Bst2UI	CCWGG	1 cut(s)	106
Bst4CI	ACNGT	1 cut(s)	71
BstACI	GRCGYC	1 cut(s)	102
BstC8I	GCNNGC	1 cut(s)	207
BstDEI	CTNAG	4 cut(s)	131, 231, 265, 308
BstDSI	CCRYGG	1 cut(s)	216
BstF5I	GGATG	1 cut(s)	293
BstH2I	RGCGCY	1 cut(s)	105
BstHHI	GCGC	1 cut(s)	104
BstKTI	GATC	1 cut(s)	261
BstMAI	GTCTC	2 cut(s)	48, 77
BstMBI	GATC	1 cut(s)	258
BstMCI	CGRYCG	1 cut(s)	160
BstNI	CCWGG	1 cut(s)	106
BstSCI	CCNGG	1 cut(s)	104
BstSFI	CTRYAG	1 cut(s)	67
BstV1I	GCAGC	4 cut(s)	49, 72, 221, 224
BstX2I	RGATCY	1 cut(s)	258
BstYI	RGATCY	1 cut(s)	258
BsuRI	GGCC	1 cut(s)	30
BtgI	CCRYGG	1 cut(s)	216
BtsCI	GGATG	1 cut(s)	293
BtsIMutI	CAGTG	1 cut(s)	253
Cac8I	GCNNGC	1 cut(s)	207
CfoI	GCGC	1 cut(s)	104
Cfr10I	RCCGGY	2 cut(s)	135, 159
CviAII	CATG	1 cut(s)	217
DdeI	CTNAG	4 cut(s)	131, 231, 265, 308
DinI	GGCGCC	1 cut(s)	103
DpnI	GATC	1 cut(s)	260
DpnII	GATC	1 cut(s)	258
EaeI	YGGCCR	1 cut(s)	28
Eco130I	CCWWGG	1 cut(s)	216
Eco24I	GRGCYC	1 cut(s)	201
Eco57I	CTGAAG	1 cut(s)	229
EcoRII	CCWGG	1 cut(s)	104
EcoT14I	CCWWGG	1 cut(s)	216
EcoT38I	GRGCYC	1 cut(s)	201
EgeI	GGCGCC	1 cut(s)	103
EheI	GGCGCC	1 cut(s)	103
ErhI	CCWWGG	1 cut(s)	216
Esp3I	CGTCTC	1 cut(s)	48
FaeI	CATG	1 cut(s)	220
FaiI	YATR	1 cut(s)	218
FaqI	GGGAC	1 cut(s)	288
FatI	CATG	1 cut(s)	216
Fnu4HI	GCNGC	7 cut(s)	28, 38, 61, 210, 213, 241, 252
FokI	GGATG	1 cut(s)	280
FriOI	GRGCYC	1 cut(s)	201
Fsp4HI	GCNGC	7 cut(s)	28, 38, 61, 210, 213, 241, 252
FspBI	CTAG	2 cut(s)	41, 111
GlaI	GCGC	1 cut(s)	103
GluI	GCNGC	7 cut(s)	28, 38, 61, 210, 213, 241, 252
HaeII	RGCGCY	1 cut(s)	105
HaeIII	GGCC	1 cut(s)	30
HapII	CCGG	3 cut(s)	81, 136, 160
HhaI	GCGC	1 cut(s)	104
Hin1I	GRCGYC	1 cut(s)	102
Hin1II	CATG	1 cut(s)	220
Hin6I	GCGC	1 cut(s)	102
HinP1I	GCGC	1 cut(s)	102
HinfI	GANTC	3 cut(s)	123, 290, 304
HpaII	CCGG	3 cut(s)	81, 136, 160
Hpy166II	GTNNAC	1 cut(s)	9
Hpy188I	TCNGA	4 cut(s)	120, 183, 289, 303
Hpy188III	TCNNGA	2 cut(s)	51, 226
Hpy8I	GTNNAC	1 cut(s)	9
Hpy99I	CGWCG	1 cut(s)	97
HpyCH4III	ACNGT	1 cut(s)	71
HpyF3I	CTNAG	4 cut(s)	131, 231, 265, 308
Hsp92I	GRCGYC	1 cut(s)	102
Hsp92II	CATG	1 cut(s)	220
HspAI	GCGC	1 cut(s)	102
KasI	GGCGCC	1 cut(s)	101
Kzo9I	GATC	1 cut(s)	258
LmnI	GCTCC	1 cut(s)	196
LpnPI	CCDG	8 cut(s)	64, 91, 94, 118, 149, 173, 252, 295
Lsp1109I	GCAGC	4 cut(s)	49, 72, 221, 224
MaeI	CTAG	2 cut(s)	41, 111
MalI	GATC	1 cut(s)	260
MboI	GATC	1 cut(s)	258
MflI	RGATCY	1 cut(s)	258
MhlI	GDGCHC	1 cut(s)	201
Mly113I	GGCGCC	1 cut(s)	102
MlyI	GAGTC	1 cut(s)	132
MnlI	CCTC	2 cut(s)	182, 307
MseI	TTAA	1 cut(s)	314
MspI	CCGG	3 cut(s)	81, 136, 160
MspR9I	CCNGG	1 cut(s)	106
MvaI	CCWGG	1 cut(s)	106
NarI	GGCGCC	1 cut(s)	102
NcoI	CCATGG	1 cut(s)	216
NdeII	GATC	1 cut(s)	258
NlaIII	CATG	1 cut(s)	220
NlaIV	GGNNCC	2 cut(s)	103, 198
NmeAIII	GCCGAG	2 cut(s)	78, 280
PfeI	GAWTC	2 cut(s)	290, 304
PkrI	GCNGC	7 cut(s)	29, 39, 62, 211, 214, 242, 253
PleI	GAGTC	1 cut(s)	131
PluTI	GGCGCC	1 cut(s)	105
PpsI	GAGTC	1 cut(s)	131
Psp6I	CCWGG	1 cut(s)	104
PspGI	CCWGG	1 cut(s)	104
PspN4I	GGNNCC	2 cut(s)	103, 198
PsuI	RGATCY	1 cut(s)	258
SaqAI	TTAA	1 cut(s)	314
SatI	GCNGC	7 cut(s)	28, 38, 61, 210, 213, 241, 252
Sau3AI	GATC	1 cut(s)	258
SchI	GAGTC	1 cut(s)	132
ScrFI	CCNGG	1 cut(s)	106
SduI	GDGCHC	1 cut(s)	201
SetI	ASST	6 cut(s)	42, 110, 132, 237, 271, 314
SfcI	CTRYAG	1 cut(s)	67
SfoI	GGCGCC	1 cut(s)	103
SsiI	CCGC	3 cut(s)	27, 240, 252
SspDI	GGCGCC	1 cut(s)	101
SspMI	CTAG	2 cut(s)	41, 111
StyD4I	CCNGG	1 cut(s)	104
StyI	CCWWGG	1 cut(s)	216
TaaI	ACNGT	1 cut(s)	71
TauI	GCSGC	3 cut(s)	30, 243, 254
TfiI	GAWTC	2 cut(s)	290, 304
Tru1I	TTAA	1 cut(s)	314
Tru9I	TTAA	1 cut(s)	314
TscAI	CASTG	1 cut(s)	253
TseI	GCWGC	4 cut(s)	37, 60, 209, 212
TspDTI	ATGAA	1 cut(s)	282
TspGWI	ACGGA	1 cut(s)	209
TspRI	CASTG	1 cut(s)	253
XspI	CTAG	2 cut(s)	41, 111

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.