pycom15g16020

EG45-like domain containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0015515
Physical Location & Seq
Reverse (-)
11163941 .. 11164464
524 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 423 bp
ATGTCCAGAACTCACAATCCATGTCAATGGCTTCCTGTCCTCCTCTTCCTTCTACAGTTTTTCCACACATCAAACGGCGATGTTGGCACTGCTGCCCAGTACCCTCCTCCATATCTACCGACGGCATGTTTTGGAAGCGATTCGTTGCAGTTTCCGGCGAGTAATCTATTGGCTGCGGCCGGAGACGAAATATGGTACAATGGGGCGTCGTGTGGGAGAAAGTACTTGGTGAGATGCATAAGTGCAGAACAAACGGGGACGTGTGTTCCGGACAAGACGATTCAAGTGAGGATTGTGGACTATGCCGGAGATATTAAAACAGTGCCATCAGTTTCCGGCACCACCATGGTCTTGTCCCAAACAGCCTTTGGATCTGTTGCTAATTCAACGGCTAAATCCATTAACATTGAGTTTCAGCAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DPBB_1

Protein Analysis

141

Amino Acids

15.08

Weight (kDa)

6.02

Isoelectric Point (pI)

42.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DPBB_1 PF03330 59 - 137 1.4e-09 Lytic transglycolase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015515)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g03970 FvH4_1g03970 FvH4_1g03970
malus_domestica MD02G1038100.v1.1
prunus_persica Prupe.7G237200_v2.0.a1
pyrus_communis pycom02g03130 pycom15g16020
rosa_chinensis RchiOBHm_Chr2g0089451
rosa_laevigata RLG00000016030
rosa_multiflora Rmu_sc0000197.1_g000007
rosa_roxburghii Rroxscaffold_2G00151920
rosa_rugosa Rorug02G0001000
rosa_samantha Rh2BG044700 Rh2CG046500 Rh2DG046100
rosa_wichuraiana Rw2G003650

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 338
AccIII TCCGGA 1 cut(s) 268
AciI CCGC 1 cut(s) 176
AclWI GGATC 1 cut(s) 379
AcoI YGGCCR 1 cut(s) 177
AcyI GRCGYC 1 cut(s) 206
AfaI GTAC 3 cut(s) 101, 197, 224
AflIII ACRYGT 1 cut(s) 260
AgsI TTSAA 2 cut(s) 284, 387
AjiI CACGTC 1 cut(s) 261
AloI GAACNNNNNNTCC 1 cut(s) 33
Alw26I GTCTC 1 cut(s) 177
AlwI GGATC 1 cut(s) 379
Aor13HI TCCGGA 1 cut(s) 268
AoxI GGCC 1 cut(s) 177
ApeKI GCWGC 2 cut(s) 92, 173
Asp700I GAANNNNTTC 1 cut(s) 139
AsuHPI GGTGA 1 cut(s) 241
BanI GGYRCC 1 cut(s) 338
BbvI GCAGC 2 cut(s) 79, 160
BccI CCATC 1 cut(s) 334
BceAI ACGGC 3 cut(s) 91, 138, 405
BcoDI GTCTC 1 cut(s) 177
BfmI CTRYAG 1 cut(s) 53
BisI GCNGC 3 cut(s) 93, 174, 177
BlsI GCNGC 3 cut(s) 94, 175, 178
BmcAI AGTACT 1 cut(s) 224
BmgBI CACGTC 1 cut(s) 261
BmiI GGNNCC 1 cut(s) 340
BmrI ACTGGG 1 cut(s) 91
BmsI GCATC 1 cut(s) 224
BmuI ACTGGG 1 cut(s) 91
BsaHI GRCGYC 1 cut(s) 206
BsaJI CCNNGG 1 cut(s) 345
BsaWI WCCGGW 1 cut(s) 268
Bse1I ACTGG 1 cut(s) 97
BseAI TCCGGA 1 cut(s) 268
BseDI CCNNGG 1 cut(s) 345
BseNI ACTGG 1 cut(s) 97
BseRI GAGGAG 2 cut(s) 32, 96
BseX3I CGGCCG 1 cut(s) 177
BseXI GCAGC 2 cut(s) 79, 160
BsgI GTGCAG 1 cut(s) 264
Bsh1285I CGRYCG 1 cut(s) 180
BshFI GGCC 1 cut(s) 179
BshNI GGYRCC 1 cut(s) 338
BsiEI CGRYCG 1 cut(s) 180
BsiSI CCGG 5 cut(s) 155, 180, 269, 306, 336
BslFI GGGAC 2 cut(s) 271, 340
BsmAI GTCTC 1 cut(s) 177
BsmBI CGTCTC 1 cut(s) 177
BsmFI GGGAC 2 cut(s) 271, 340
BsnI GGCC 1 cut(s) 179
Bsp13I TCCGGA 1 cut(s) 268
Bsp143I GATC 1 cut(s) 371
Bsp19I CCATGG 1 cut(s) 345
BspACI CCGC 1 cut(s) 176
BspANI GGCC 1 cut(s) 179
BspEI TCCGGA 1 cut(s) 268
BspLI GGNNCC 1 cut(s) 340
BspPI GGATC 1 cut(s) 379
BspT107I GGYRCC 1 cut(s) 338
BsrI ACTGG 1 cut(s) 97
BssECI CCNNGG 1 cut(s) 345
BssMI GATC 1 cut(s) 371
BssNI GRCGYC 1 cut(s) 206
BssT1I CCWWGG 1 cut(s) 345
Bst4CI ACNGT 2 cut(s) 57, 322
Bst6I CTCTTC 1 cut(s) 50
BstACI GRCGYC 1 cut(s) 206
BstDSI CCRYGG 1 cut(s) 345
BstKTI GATC 1 cut(s) 374
BstMAI GTCTC 1 cut(s) 177
BstMBI GATC 1 cut(s) 371
BstMCI CGRYCG 1 cut(s) 180
BstMWI GCNNNNNNNGC 1 cut(s) 84
BstNSI RCATGY 1 cut(s) 129
BstSFI CTRYAG 1 cut(s) 53
BstV1I GCAGC 2 cut(s) 79, 160
BstX2I RGATCY 1 cut(s) 371
BstXI CCANNNNNNTGG 1 cut(s) 27
BstYI RGATCY 1 cut(s) 371
BstZI CGGCCG 1 cut(s) 177
BsuRI GGCC 1 cut(s) 179
BtgI CCRYGG 1 cut(s) 345
BtgZI GCGATG 1 cut(s) 93
BtrI CACGTC 1 cut(s) 261
BtsI GCAGTG 1 cut(s) 87
BtsIMutI CAGTG 2 cut(s) 87, 327
CseI GACGC 1 cut(s) 195
Csp6I GTAC 3 cut(s) 100, 196, 223
CviAII CATG 3 cut(s) 21, 126, 346
CviJI RGCY 5 cut(s) 31, 173, 179, 365, 392
CviKI_1 RGCY 5 cut(s) 31, 173, 179, 365, 392
CviQI GTAC 3 cut(s) 100, 196, 223
DpnI GATC 1 cut(s) 373
DpnII GATC 1 cut(s) 371
EaeI YGGCCR 1 cut(s) 177
EagI CGGCCG 1 cut(s) 177
Eam1104I CTCTTC 1 cut(s) 50
EarI CTCTTC 1 cut(s) 50
EclXI CGGCCG 1 cut(s) 177
Eco130I CCWWGG 1 cut(s) 345
Eco52I CGGCCG 1 cut(s) 177
EcoT14I CCWWGG 1 cut(s) 345
EcoT22I ATGCAT 1 cut(s) 239
ErhI CCWWGG 1 cut(s) 345
Esp3I CGTCTC 1 cut(s) 177
FaeI CATG 3 cut(s) 24, 129, 349
FaiI YATR 7 cut(s) 22, 112, 127, 193, 239, 303, 347
FaqI GGGAC 2 cut(s) 271, 340
FatI CATG 3 cut(s) 20, 125, 345
Fnu4HI GCNGC 3 cut(s) 93, 174, 177
Fsp4HI GCNGC 3 cut(s) 93, 174, 177
GluI GCNGC 3 cut(s) 93, 174, 177
HaeIII GGCC 1 cut(s) 179
HapII CCGG 5 cut(s) 155, 180, 269, 306, 336
HgaI GACGC 1 cut(s) 195
Hin1I GRCGYC 1 cut(s) 206
Hin1II CATG 3 cut(s) 24, 129, 349
HinfI GANTC 2 cut(s) 140, 280
HpaII CCGG 5 cut(s) 155, 180, 269, 306, 336
HphI GGTGA 1 cut(s) 241
Hpy166II GTNNAC 1 cut(s) 298
Hpy188III TCNNGA 2 cut(s) 6, 269
Hpy8I GTNNAC 1 cut(s) 298
Hpy99I CGWCG 2 cut(s) 124, 211
HpyAV CCTTC 1 cut(s) 59
HpyCH4III ACNGT 2 cut(s) 57, 322
HpyCH4IV ACGT 1 cut(s) 260
HpyCH4V TGCA 3 cut(s) 148, 237, 245
HpyF10VI GCNNNNNNNGC 1 cut(s) 84
HpySE526I ACGT 1 cut(s) 260
Hsp92I GRCGYC 1 cut(s) 206
Hsp92II CATG 3 cut(s) 24, 129, 349
Kpn2I TCCGGA 1 cut(s) 268
Kzo9I GATC 1 cut(s) 371
LpnPI CCDG 8 cut(s) 19, 48, 110, 168, 193, 282, 319, 349
Lsp1109I GCAGC 2 cut(s) 79, 160
LweI GCATC 1 cut(s) 224
MaeII ACGT 1 cut(s) 260
MalI GATC 1 cut(s) 373
MboI GATC 1 cut(s) 371
MboII GAAGA 1 cut(s) 37
MflI RGATCY 1 cut(s) 371
MluCI AATT 1 cut(s) 382
MnlI CCTC 5 cut(s) 50, 53, 114, 117, 282
Mph1103I ATGCAT 1 cut(s) 239
MroI TCCGGA 1 cut(s) 268
MroXI GAANNNNTTC 1 cut(s) 139
MseI TTAA 2 cut(s) 315, 402
MslI CAYNNNNRTG 2 cut(s) 25, 344
MspI CCGG 5 cut(s) 155, 180, 269, 306, 336
MwoI GCNNNNNNNGC 1 cut(s) 84
NcoI CCATGG 1 cut(s) 345
NdeII GATC 1 cut(s) 371
NlaIII CATG 3 cut(s) 24, 129, 349
NlaIV GGNNCC 1 cut(s) 340
NsiI ATGCAT 1 cut(s) 239
NspI RCATGY 1 cut(s) 129
PdmI GAANNNNTTC 1 cut(s) 139
PfeI GAWTC 2 cut(s) 140, 280
PkrI GCNGC 3 cut(s) 94, 175, 178
PspN4I GGNNCC 1 cut(s) 340
PsuI RGATCY 1 cut(s) 371
RsaI GTAC 3 cut(s) 101, 197, 224
RsaNI GTAC 3 cut(s) 100, 196, 223
RseI CAYNNNNRTG 2 cut(s) 25, 344
SaqAI TTAA 2 cut(s) 315, 402
SatI GCNGC 3 cut(s) 93, 174, 177
Sau3AI GATC 1 cut(s) 371
ScaI AGTACT 1 cut(s) 224
SetI ASST 1 cut(s) 263
SfaNI GCATC 1 cut(s) 224
SfcI CTRYAG 1 cut(s) 53
SmiMI CAYNNNNRTG 2 cut(s) 25, 344
Sse9I AATT 1 cut(s) 382
SsiI CCGC 1 cut(s) 176
StyI CCWWGG 1 cut(s) 345
TaaI ACNGT 2 cut(s) 57, 322
TaiI ACGT 1 cut(s) 263
TasI AATT 1 cut(s) 382
TatI WGTACW 1 cut(s) 222
TauI GCSGC 1 cut(s) 179
TfiI GAWTC 2 cut(s) 140, 280
Tru1I TTAA 2 cut(s) 315, 402
Tru9I TTAA 2 cut(s) 315, 402
TscAI CASTG 2 cut(s) 94, 327
TseI GCWGC 2 cut(s) 92, 173
TspRI CASTG 2 cut(s) 94, 327
XceI RCATGY 1 cut(s) 129
XcmI CCANNNNNNNNNTGG 1 cut(s) 365
XmnI GAANNNNTTC 1 cut(s) 139
ZrmI AGTACT 1 cut(s) 224
Zsp2I ATGCAT 1 cut(s) 239
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.