pycom15g16720

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0017570
Physical Location & Seq
Forward (+)
11734589 .. 11734837
249 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 249 bp
ATGGCCTCACATGGCGGTGGCCTGAAAGTCTCAACAACTCCAGAAAATGGTGGCAACGCAGAAGCTGCATCAATTACTTCACAAAAGGGTCAATGTCTCTGCTCACCAACGACACATCAAGGCTCATTCCGGTGCCGGTTTCACCGGTCCACGTCCTCGGTTTGGATGAAGCGATCAAAGTCCATGCCTACCAATAGTAACTCAGCGGCTTCTTTCTCTCCCACATCAGTACTTGATCAGTCTACTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

83

Amino Acids

8.59

Weight (kDa)

9.75

Isoelectric Point (pI)

54.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017570)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g04950
malus_domestica MD02G1048100.v1.1
prunus_persica Prupe.7G230000_v2.0.a1
pyrus_communis pycom02g04020 pycom15g16720
rosa_chinensis RchiOBHm_Chr2g0090561
rosa_roxburghii Rroxscaffold_2G00151030
rosa_rugosa Rorug02G0009100
rosa_samantha Rh2BG053600 Rh2CG055800 Rh2DG054700
rosa_wichuraiana Rw2G004750

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 132
AccB7I CCANNNNNTGG 1 cut(s) 47
AccI GTMKAC 1 cut(s) 242
AciI CCGC 2 cut(s) 15, 206
AfaI GTAC 1 cut(s) 231
AfiI CCNNNNNNNGG 2 cut(s) 47, 162
AgeI ACCGGT 1 cut(s) 144
AjiI CACGTC 1 cut(s) 153
AluBI AGCT 1 cut(s) 65
AluI AGCT 1 cut(s) 65
Alw26I GTCTC 2 cut(s) 34, 101
AlwNI CAGNNNCTG 1 cut(s) 65
AoxI GGCC 2 cut(s) 3, 19
ApeKI GCWGC 1 cut(s) 65
AsiGI ACCGGT 1 cut(s) 144
AspS9I GGNCC 1 cut(s) 147
AsuHPI GGTGA 2 cut(s) 96, 134
AvaII GGWCC 1 cut(s) 147
BanI GGYRCC 1 cut(s) 132
BbvI GCAGC 1 cut(s) 52
BclI TGATCA 1 cut(s) 235
BcoDI GTCTC 2 cut(s) 34, 101
BisI GCNGC 2 cut(s) 66, 207
BlsI GCNGC 2 cut(s) 67, 208
BmcAI AGTACT 1 cut(s) 231
Bme18I GGWCC 1 cut(s) 147
BmgBI CACGTC 1 cut(s) 153
BmgT120I GGNCC 1 cut(s) 147
BmiI GGNNCC 1 cut(s) 134
BmsI GCATC 1 cut(s) 77
BpmI CTGGAG 1 cut(s) 24
BsaJI CCNNGG 1 cut(s) 156
BsaWI WCCGGW 2 cut(s) 129, 144
Bsc4I CCNNNNNNNGG 2 cut(s) 47, 162
Bse118I RCCGGY 2 cut(s) 135, 144
BseDI CCNNGG 1 cut(s) 156
BseGI GGATG 1 cut(s) 171
BseLI CCNNNNNNNGG 2 cut(s) 47, 162
BseMII CTCAG 1 cut(s) 216
BseXI GCAGC 1 cut(s) 52
BshFI GGCC 2 cut(s) 5, 21
BshNI GGYRCC 1 cut(s) 132
BshTI ACCGGT 1 cut(s) 144
BsiSI CCGG 3 cut(s) 130, 136, 145
BslI CCNNNNNNNGG 2 cut(s) 47, 162
BsmAI GTCTC 2 cut(s) 34, 101
BsnI GGCC 2 cut(s) 5, 21
Bsp143I GATC 2 cut(s) 173, 235
BspACI CCGC 2 cut(s) 15, 206
BspANI GGCC 2 cut(s) 5, 21
BspCNI CTCAG 1 cut(s) 215
BspLI GGNNCC 1 cut(s) 134
BspT107I GGYRCC 1 cut(s) 132
BsrFI RCCGGY 2 cut(s) 135, 144
BssAI RCCGGY 2 cut(s) 135, 144
BssECI CCNNGG 1 cut(s) 156
BssMI GATC 2 cut(s) 173, 235
BstAPI GCANNNNNTGC 1 cut(s) 65
BstDEI CTNAG 2 cut(s) 202, 246
BstF5I GGATG 1 cut(s) 171
BstKTI GATC 2 cut(s) 176, 238
BstMAI GTCTC 2 cut(s) 34, 101
BstMBI GATC 2 cut(s) 173, 235
BstMWI GCNNNNNNNGC 1 cut(s) 65
BstV1I GCAGC 1 cut(s) 52
BsuRI GGCC 2 cut(s) 5, 21
BtrI CACGTC 1 cut(s) 153
BtsCI GGATG 1 cut(s) 171
CaiI CAGNNNCTG 1 cut(s) 65
Cfr10I RCCGGY 2 cut(s) 135, 144
Cfr13I GGNCC 1 cut(s) 147
Csp6I GTAC 1 cut(s) 230
CspAI ACCGGT 1 cut(s) 144
CviAII CATG 2 cut(s) 11, 184
CviJI RGCY 5 cut(s) 5, 21, 65, 123, 209
CviKI_1 RGCY 5 cut(s) 5, 21, 65, 123, 209
CviQI GTAC 1 cut(s) 230
DdeI CTNAG 2 cut(s) 202, 246
DpnI GATC 2 cut(s) 175, 237
DpnII GATC 2 cut(s) 173, 235
Eco47I GGWCC 1 cut(s) 147
FaeI CATG 2 cut(s) 14, 187
FaiI YATR 2 cut(s) 12, 185
FatI CATG 2 cut(s) 10, 183
FbaI TGATCA 1 cut(s) 235
FblI GTMKAC 1 cut(s) 242
Fnu4HI GCNGC 2 cut(s) 66, 207
FokI GGATG 1 cut(s) 178
Fsp4HI GCNGC 2 cut(s) 66, 207
GluI GCNGC 2 cut(s) 66, 207
GsuI CTGGAG 1 cut(s) 24
HaeIII GGCC 2 cut(s) 5, 21
HapII CCGG 3 cut(s) 130, 136, 145
Hin1II CATG 2 cut(s) 14, 187
HpaII CCGG 3 cut(s) 130, 136, 145
HphI GGTGA 2 cut(s) 96, 134
Hpy166II GTNNAC 2 cut(s) 150, 243
Hpy188III TCNNGA 1 cut(s) 41
Hpy8I GTNNAC 2 cut(s) 150, 243
HpyCH4IV ACGT 1 cut(s) 152
HpyCH4V TGCA 1 cut(s) 68
HpyF10VI GCNNNNNNNGC 1 cut(s) 65
HpyF3I CTNAG 2 cut(s) 202, 246
HpySE526I ACGT 1 cut(s) 152
Hsp92II CATG 2 cut(s) 14, 187
Ksp22I TGATCA 1 cut(s) 235
Kzo9I GATC 2 cut(s) 173, 235
LpnPI CCDG 5 cut(s) 35, 54, 143, 149, 158
Lsp1109I GCAGC 1 cut(s) 52
LweI GCATC 1 cut(s) 77
MaeII ACGT 1 cut(s) 152
MaeIII GTNAC 1 cut(s) 197
MalI GATC 2 cut(s) 175, 237
MboI GATC 2 cut(s) 173, 235
MluCI AATT 1 cut(s) 72
MnlI CCTC 2 cut(s) 16, 166
MslI CAYNNNNRTG 2 cut(s) 15, 130
MspA1I CMGCKG 1 cut(s) 206
MspI CCGG 3 cut(s) 130, 136, 145
MwoI GCNNNNNNNGC 1 cut(s) 65
NdeII GATC 2 cut(s) 173, 235
NlaIII CATG 2 cut(s) 14, 187
NlaIV GGNNCC 1 cut(s) 134
PflMI CCANNNNNTGG 1 cut(s) 47
PinAI ACCGGT 1 cut(s) 144
PkrI GCNGC 2 cut(s) 67, 208
PspN4I GGNNCC 1 cut(s) 134
PspPI GGNCC 1 cut(s) 147
PstNI CAGNNNCTG 1 cut(s) 65
RsaI GTAC 1 cut(s) 231
RsaNI GTAC 1 cut(s) 230
RseI CAYNNNNRTG 2 cut(s) 15, 130
SatI GCNGC 2 cut(s) 66, 207
Sau3AI GATC 2 cut(s) 173, 235
Sau96I GGNCC 1 cut(s) 147
ScaI AGTACT 1 cut(s) 231
SetI ASST 2 cut(s) 67, 155
SfaNI GCATC 1 cut(s) 77
SinI GGWCC 1 cut(s) 147
SmiMI CAYNNNNRTG 2 cut(s) 15, 130
Sse9I AATT 1 cut(s) 72
SsiI CCGC 2 cut(s) 15, 206
TaiI ACGT 1 cut(s) 155
TasI AATT 1 cut(s) 72
TatI WGTACW 1 cut(s) 229
TauI GCSGC 1 cut(s) 209
TseI GCWGC 1 cut(s) 65
TspDTI ATGAA 1 cut(s) 182
Van91I CCANNNNNTGG 1 cut(s) 47
VpaK11BI GGWCC 1 cut(s) 147
XmiI GTMKAC 1 cut(s) 242
ZrmI AGTACT 1 cut(s) 231
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.