pycom15g16970

Protein mrp homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0012373
Physical Location & Seq
Forward (+)
11910259 .. 11913821
3563 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1254 bp
ATGTTTGAACAACAGGCAAATGAGGTGGTGAATGCACTTCCTTGGGTTAAGAGTGTCAGTGTGACTATGTCAGCACAGCCAGCGAAACCAATTTATGCTGGGCAACTTCCGGCAGGGTTACAGACGATTTCAAATGTTATAGCAGTTTCTAGTTGTAAGGGAGGTGTGGGAAAATCAACTGTAGCGGTAAACTTGGCATACACTTTGGCTGGCATGGGTGCTAGGGTTGGTATATTTGATGCTGATGTCTATGGTCCAAGTTTACCGACAATGGTCTCCCCTGAGAACCGAATACTAGTGATGAACCCAGAGACGAAAACAATAATTCCTACAGAATACTTGGGAGTGAAATTGGTGTCTTTTGGATTTGCCGGGCAAGGGCGTGCTATAATGCGAGGCCCCATGGTTTCTGGTGTCATCAACCAACTTCTAACTACAACTGAGTGGGGAGAGCTGGATTACCTTGTTATTGACATGCCTCCTGGAACTGGTGATATTCAGCTTACGTTGTGCCAGGTTGTTCCATTAACTGCCGCTGTTATCGTTACCACCCCTCAAAAGCTAGCTTTTATTGATGTTGCAAAAGGAGTTCGCATGTTTTCAAAGCTTAAGGTGCCGTGTGTTGCTGTAGTCGAGAATATGAGCCATTTTGAAGCTGATGGGAAACGCTATTACCCATTTGGTAAAGGATCAGGCTCTCAGGTTGTACAGCAGTTTGGTATCCCGAATCTGTTTGATCTTCCCATTAGACCAACTCTATCTGCTTCCGGAGATAGTGGAACGCCGGAAGTGGTAGCTGATCCTCTAGGTGAAGTTTCGAAGACATTTCAGGAGCTTGGGATATGTGTTGTGCAACAGTGTGCTAAGATTCGCCAACAAGTGTCAACTGCTGTGATGTACGATAAATCTATCAAGGCAATAAGAGTGAAGGTACCGGATTCAGATGAAGAATTTCTTCTCCATCCTGCGACTGTGAGGCGGAATGACCGCTCTGCACAAAGTGTGGATGAGTGGACGGGGGAGCAAAAGTTGCAGTTTGCTGATGTTCCGGAAGACATAGAACCTGAAGAGATTCGGCCTATGGGGAATTATGCCGTTTCAATAACGTGGCCAGACGGATTTAGTCAGATTGCACCCTACGATCAGTTGCAGACAATCGAGCGGCTAGTTGATGTTCCTCGGCTAGTTCCGTCCCAGGCAAGTTACCATTCTTACCATAATTTTTCACTGCATCAGTTTGATTGCTTCAAGTGA

Protein Analysis

418

Amino Acids

45.4

Weight (kDa)

5.28

Isoelectric Point (pI)

36.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ParA PF10609 43 - 279 3.1e-82 NUBPL iron-transfer P-loop NTPase
AAA_31 PF13614 45 - 162 8.7e-09 AAA domain
MipZ PF09140 46 - 192 9.1e-07 ATPase MipZ
CbiA PF01656 47 - 153 8.7e-10 CobQ/CobB/MinD/ParA nucleotide binding domain
GBBH-like_N PF06155 311 - 376 1.7e-08 Gamma-butyrobetaine hydroxylase-like, N-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012373)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G24430
fragaria_vesca FvH4_1g05310 FvH4_1g05310 FvH4_1g05310 FvH4_1g05310
malus_domestica MD02G1056300.v1.1 MD15G1189200.v1.1
prunus_persica Prupe.7G227600_v2.0.a1
pyrus_communis pycom15g16970
rosa_chinensis RchiOBHm_Chr2g0091011
rosa_laevigata RLG00000016166
rosa_multiflora Rmu_sc0003305.1_g000005
rosa_roxburghii Rroxscaffold_2G00150690
rosa_rugosa Rorug02G0011400
rosa_samantha Rh2AG057800 Rh2BG056100 Rh2CG058400 Rh2DG057500
rosa_wichuraiana Rw2G005150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 931
AccB1I GGYRCC 2 cut(s) 613, 931
AccBSI CCGCTC 2 cut(s) 990, 1162
AccIII TCCGGA 2 cut(s) 767, 1048
AciI CCGC 5 cut(s) 185, 534, 979, 988, 1162
AclWI GGATC 2 cut(s) 697, 794
AcoI YGGCCR 1 cut(s) 1109
AcsI RAATTY 1 cut(s) 950
AcuI CTGAAG 1 cut(s) 1086
AdeI CACNNNGTG 1 cut(s) 1001
AfaI GTAC 3 cut(s) 708, 899, 933
AfiI CCNNNNNNNGG 2 cut(s) 378, 488
AflII CTTAAG 1 cut(s) 608
AgsI TTSAA 6 cut(s) 8, 132, 603, 653, 1101, 1249
AhlI ACTAGT 1 cut(s) 295
AjnI CCWGG 3 cut(s) 481, 513, 1194
AluBI AGCT 8 cut(s) 454, 502, 562, 566, 607, 656, 797, 835
AluI AGCT 8 cut(s) 454, 502, 562, 566, 607, 656, 797, 835
Alw26I GTCTC 2 cut(s) 280, 305
AlwI GGATC 2 cut(s) 697, 794
Aor13HI TCCGGA 2 cut(s) 767, 1048
AoxI GGCC 3 cut(s) 397, 1076, 1109
ApoI RAATTY 1 cut(s) 950
Asp700I GAANNNNTTC 3 cut(s) 951, 954, 1071
Asp718I GGTACC 1 cut(s) 931
AspS9I GGNCC 2 cut(s) 254, 398
AsuC2I CCSGG 1 cut(s) 373
AsuHPI GGTGA 3 cut(s) 40, 503, 821
AsuII TTCGAA 1 cut(s) 818
AsuNHI GCTAGC 1 cut(s) 562
AvaII GGWCC 1 cut(s) 254
BalI TGGCCA 1 cut(s) 1111
BanI GGYRCC 2 cut(s) 613, 931
BbsI GAAGAC 2 cut(s) 827, 1059
BccI CCATC 2 cut(s) 653, 969
BceAI ACGGC 2 cut(s) 601, 1079
BciT130I CCWGG 3 cut(s) 483, 515, 1196
BciVI GTATCC 1 cut(s) 731
BcnI CCSGG 1 cut(s) 373
BcoDI GTCTC 2 cut(s) 280, 305
BcuI ACTAGT 1 cut(s) 295
BfaI CTAG 7 cut(s) 150, 222, 296, 563, 806, 1166, 1184
BfmI CTRYAG 3 cut(s) 180, 330, 627
BfrI CTTAAG 1 cut(s) 608
BfuI GTATCC 1 cut(s) 731
BisI GCNGC 2 cut(s) 534, 1163
BlsI GCNGC 2 cut(s) 535, 1164
Bme1390I CCNGG 4 cut(s) 373, 483, 515, 1196
Bme18I GGWCC 1 cut(s) 254
BmgT120I GGNCC 2 cut(s) 254, 398
BmiI GGNNCC 3 cut(s) 400, 615, 933
BmrFI CCNGG 4 cut(s) 373, 483, 515, 1196
BmsI GCATC 2 cut(s) 229, 1240
BmtI GCTAGC 1 cut(s) 566
BoxI GACNNNNGTC 1 cut(s) 272
BpiI GAAGAC 2 cut(s) 827, 1059
Bpu14I TTCGAA 1 cut(s) 818
BpuMI CCSGG 1 cut(s) 373
BsaI GGTCTC 1 cut(s) 280
BsaJI CCNNGG 4 cut(s) 41, 402, 1178, 1194
BsaWI WCCGGW 3 cut(s) 767, 934, 1048
BsaXI ACNNNNNCTCC 2 cut(s) 1013, 1043
Bsc4I CCNNNNNNNGG 2 cut(s) 378, 488
Bse1I ACTGG 1 cut(s) 493
BseAI TCCGGA 2 cut(s) 767, 1048
BseBI CCWGG 3 cut(s) 483, 515, 1196
BseDI CCNNGG 4 cut(s) 41, 402, 1178, 1194
BseGI GGATG 2 cut(s) 961, 1012
BseLI CCNNNNNNNGG 2 cut(s) 378, 488
BseMII CTCAG 3 cut(s) 273, 432, 713
BseNI ACTGG 1 cut(s) 493
BseYI CCCAGC 1 cut(s) 98
BsgI GTGCAG 1 cut(s) 978
BshFI GGCC 3 cut(s) 399, 1078, 1111
BshNI GGYRCC 2 cut(s) 613, 931
BsiSI CCGG 6 cut(s) 110, 372, 768, 785, 935, 1049
BslFI GGGAC 1 cut(s) 1177
BslI CCNNNNNNNGG 2 cut(s) 378, 488
BsmAI GTCTC 2 cut(s) 280, 305
BsmBI CGTCTC 1 cut(s) 305
BsmFI GGGAC 1 cut(s) 1177
BsmI GAATGC 1 cut(s) 37
BsnI GGCC 3 cut(s) 399, 1078, 1111
Bso31I GGTCTC 1 cut(s) 280
Bsp119I TTCGAA 1 cut(s) 818
Bsp13I TCCGGA 2 cut(s) 767, 1048
Bsp1407I TGTACA 1 cut(s) 706
Bsp143I GATC 4 cut(s) 689, 736, 799, 1141
Bsp19I CCATGG 1 cut(s) 402
BspACI CCGC 5 cut(s) 185, 534, 979, 988, 1162
BspANI GGCC 3 cut(s) 399, 1078, 1111
BspCNI CTCAG 3 cut(s) 274, 433, 712
BspEI TCCGGA 2 cut(s) 767, 1048
BspLI GGNNCC 3 cut(s) 400, 615, 933
BspOI GCTAGC 1 cut(s) 566
BspPI GGATC 2 cut(s) 697, 794
BspT104I TTCGAA 1 cut(s) 818
BspT107I GGYRCC 2 cut(s) 613, 931
BspTI CTTAAG 1 cut(s) 608
BspTNI GGTCTC 1 cut(s) 280
BsrBI CCGCTC 2 cut(s) 990, 1162
BsrGI TGTACA 1 cut(s) 706
BsrI ACTGG 1 cut(s) 493
BssECI CCNNGG 4 cut(s) 41, 402, 1178, 1194
BssMI GATC 4 cut(s) 689, 736, 799, 1141
BssT1I CCWWGG 2 cut(s) 41, 402
Bst2UI CCWGG 3 cut(s) 483, 515, 1196
Bst4CI ACNGT 3 cut(s) 181, 858, 973
Bst6I CTCTTC 1 cut(s) 1062
BstAFI CTTAAG 1 cut(s) 608
BstAPI GCANNNNNTGC 1 cut(s) 1030
BstAUI TGTACA 1 cut(s) 706
BstBI TTCGAA 1 cut(s) 818
BstC8I GCNNGC 4 cut(s) 81, 211, 384, 564
BstDEI CTNAG 4 cut(s) 282, 441, 699, 864
BstDSI CCRYGG 1 cut(s) 402
BstF5I GGATG 2 cut(s) 961, 1012
BstKTI GATC 4 cut(s) 692, 739, 802, 1144
BstMAI GTCTC 2 cut(s) 280, 305
BstMBI GATC 4 cut(s) 689, 736, 799, 1141
BstMWI GCNNNNNNNGC 3 cut(s) 80, 613, 1030
BstNI CCWGG 3 cut(s) 483, 515, 1196
BstNSI RCATGY 2 cut(s) 478, 598
BstPAI GACNNNNGTC 1 cut(s) 272
BstSCI CCNGG 4 cut(s) 371, 481, 513, 1194
BstSFI CTRYAG 3 cut(s) 180, 330, 627
BstV2I GAAGAC 2 cut(s) 827, 1059
BsuI GTATCC 1 cut(s) 731
BsuRI GGCC 3 cut(s) 399, 1078, 1111
BtgI CCRYGG 1 cut(s) 402
BtsCI GGATG 2 cut(s) 961, 1012
BtsI GCAGTG 1 cut(s) 1226
BtsIMutI CAGTG 3 cut(s) 64, 863, 1226
Cac8I GCNNGC 4 cut(s) 81, 211, 384, 564
Cfr13I GGNCC 2 cut(s) 254, 398
Csp6I GTAC 3 cut(s) 707, 898, 932
CspCI CAANNNNNGTGG 2 cut(s) 6, 41
CviAII CATG 4 cut(s) 214, 403, 475, 595
CviQI GTAC 3 cut(s) 707, 898, 932
DdeI CTNAG 4 cut(s) 282, 441, 699, 864
DpnI GATC 4 cut(s) 691, 738, 801, 1143
DpnII GATC 4 cut(s) 689, 736, 799, 1141
DraIII CACNNNGTG 1 cut(s) 1001
EaeI YGGCCR 1 cut(s) 1109
Eam1104I CTCTTC 1 cut(s) 1062
EarI CTCTTC 1 cut(s) 1062
EciI GGCGGA 1 cut(s) 994
Eco130I CCWWGG 2 cut(s) 41, 402
Eco31I GGTCTC 1 cut(s) 280
Eco47I GGWCC 1 cut(s) 254
Eco57I CTGAAG 1 cut(s) 1086
EcoO109I RGGNCCY 1 cut(s) 398
EcoRII CCWGG 3 cut(s) 481, 513, 1194
EcoT14I CCWWGG 2 cut(s) 41, 402
ErhI CCWWGG 2 cut(s) 41, 402
Esp3I CGTCTC 1 cut(s) 305
FaeI CATG 4 cut(s) 217, 406, 478, 598
FalI AAGNNNNNCTT 2 cut(s) 939, 971
FaqI GGGAC 1 cut(s) 1177
FatI CATG 4 cut(s) 213, 402, 474, 594
Fnu4HI GCNGC 2 cut(s) 534, 1163
FokI GGATG 2 cut(s) 948, 1019
Fsp4HI GCNGC 2 cut(s) 534, 1163
FspBI CTAG 7 cut(s) 150, 222, 296, 563, 806, 1166, 1184
GluI GCNGC 2 cut(s) 534, 1163
GsaI CCCAGC 1 cut(s) 102
HaeIII GGCC 3 cut(s) 399, 1078, 1111
HapII CCGG 6 cut(s) 110, 372, 768, 785, 935, 1049
Hin1II CATG 4 cut(s) 217, 406, 478, 598
HincII GTYRAC 1 cut(s) 885
HindII GTYRAC 1 cut(s) 885
HindIII AAGCTT 1 cut(s) 605
HinfI GANTC 4 cut(s) 727, 868, 938, 1072
HpaII CCGG 6 cut(s) 110, 372, 768, 785, 935, 1049
HphI GGTGA 3 cut(s) 40, 503, 821
Hpy166II GTNNAC 4 cut(s) 190, 263, 885, 1014
Hpy188I TCNGA 2 cut(s) 943, 1128
Hpy188III TCNNGA 5 cut(s) 634, 724, 768, 830, 1049
Hpy8I GTNNAC 4 cut(s) 190, 263, 885, 1014
HpyAV CCTTC 1 cut(s) 922
HpyCH4III ACNGT 3 cut(s) 181, 858, 973
HpyCH4IV ACGT 2 cut(s) 506, 1106
HpyCH4V TGCA 8 cut(s) 35, 581, 853, 995, 1033, 1133, 1150, 1231
HpyF10VI GCNNNNNNNGC 3 cut(s) 80, 613, 1030
HpyF3I CTNAG 4 cut(s) 282, 441, 699, 864
HpySE526I ACGT 2 cut(s) 506, 1106
Hsp92II CATG 4 cut(s) 217, 406, 478, 598
Kpn2I TCCGGA 2 cut(s) 767, 1048
KpnI GGTACC 1 cut(s) 935
Kzo9I GATC 4 cut(s) 689, 736, 799, 1141
LmnI GCTCC 2 cut(s) 832, 1021
LweI GCATC 2 cut(s) 229, 1240
MaeI CTAG 7 cut(s) 150, 222, 296, 563, 806, 1166, 1184
MaeII ACGT 2 cut(s) 506, 1106
MaeIII GTNAC 4 cut(s) 61, 117, 544, 1202
MalI GATC 4 cut(s) 691, 738, 801, 1143
MbiI CCGCTC 2 cut(s) 990, 1162
MboI GATC 4 cut(s) 689, 736, 799, 1141
MboII GAAGA 6 cut(s) 731, 832, 947, 959, 1064, 1079
MlsI TGGCCA 1 cut(s) 1111
MluCI AATT 6 cut(s) 90, 324, 350, 950, 1087, 1219
MluNI TGGCCA 1 cut(s) 1111
MnlI CCTC 8 cut(s) 16, 155, 389, 489, 564, 813, 969, 1188
Mox20I TGGCCA 1 cut(s) 1111
MroI TCCGGA 2 cut(s) 767, 1048
MroXI GAANNNNTTC 3 cut(s) 951, 954, 1071
MscI TGGCCA 1 cut(s) 1111
MseI TTAA 3 cut(s) 48, 527, 609
Msp20I TGGCCA 1 cut(s) 1111
MspA1I CMGCKG 1 cut(s) 536
MspCI CTTAAG 1 cut(s) 608
MspI CCGG 6 cut(s) 110, 372, 768, 785, 935, 1049
MspR9I CCNGG 4 cut(s) 373, 483, 515, 1196
Mva1269I GAATGC 1 cut(s) 37
MvaI CCWGG 3 cut(s) 483, 515, 1196
MwoI GCNNNNNNNGC 3 cut(s) 80, 613, 1030
NciI CCSGG 1 cut(s) 373
NcoI CCATGG 1 cut(s) 402
NdeII GATC 4 cut(s) 689, 736, 799, 1141
NheI GCTAGC 1 cut(s) 562
NlaIII CATG 4 cut(s) 217, 406, 478, 598
NlaIV GGNNCC 3 cut(s) 400, 615, 933
NmeAIII GCCGAG 1 cut(s) 1159
NmuCI GTSAC 1 cut(s) 61
NspI RCATGY 2 cut(s) 478, 598
NspV TTCGAA 1 cut(s) 818
PctI GAATGC 1 cut(s) 37
PdmI GAANNNNTTC 3 cut(s) 951, 954, 1071
PfeI GAWTC 4 cut(s) 727, 868, 938, 1072
PflFI GACNNNGTC 1 cut(s) 67
PfoI TCCNGGA 1 cut(s) 481
PkrI GCNGC 2 cut(s) 535, 1164
PshAI GACNNNNGTC 1 cut(s) 272
Psp6I CCWGG 3 cut(s) 481, 513, 1194
PspFI CCCAGC 1 cut(s) 98
PspGI CCWGG 3 cut(s) 481, 513, 1194
PspN4I GGNNCC 3 cut(s) 400, 615, 933
PspPI GGNCC 2 cut(s) 254, 398
PsyI GACNNNGTC 1 cut(s) 67
RsaI GTAC 3 cut(s) 708, 899, 933
RsaNI GTAC 3 cut(s) 707, 898, 932
SaqAI TTAA 3 cut(s) 48, 527, 609
SatI GCNGC 2 cut(s) 534, 1163
Sau3AI GATC 4 cut(s) 689, 736, 799, 1141
Sau96I GGNCC 2 cut(s) 254, 398
ScrFI CCNGG 4 cut(s) 373, 483, 515, 1196
SfaNI GCATC 2 cut(s) 229, 1240
SfcI CTRYAG 3 cut(s) 180, 330, 627
SfuI TTCGAA 1 cut(s) 818
SinI GGWCC 1 cut(s) 254
SmlI CTYRAG 1 cut(s) 608
SmoI CTYRAG 1 cut(s) 608
SpeI ACTAGT 1 cut(s) 295
Sse9I AATT 6 cut(s) 90, 324, 350, 950, 1087, 1219
SsiI CCGC 5 cut(s) 185, 534, 979, 988, 1162
SspMI CTAG 7 cut(s) 150, 222, 296, 563, 806, 1166, 1184
StyD4I CCNGG 4 cut(s) 371, 481, 513, 1194
StyI CCWWGG 2 cut(s) 41, 402
TaaI ACNGT 3 cut(s) 181, 858, 973
TaiI ACGT 2 cut(s) 509, 1109
TaqI TCGA 3 cut(s) 633, 818, 1158
TasI AATT 6 cut(s) 90, 324, 350, 950, 1087, 1219
TatI WGTACW 1 cut(s) 706
TauI GCSGC 2 cut(s) 536, 1165
TfiI GAWTC 4 cut(s) 727, 868, 938, 1072
Tru1I TTAA 3 cut(s) 48, 527, 609
Tru9I TTAA 3 cut(s) 48, 527, 609
TscAI CASTG 3 cut(s) 64, 863, 1233
TseFI GTSAC 1 cut(s) 61
Tsp45I GTSAC 1 cut(s) 61
TspDTI ATGAA 2 cut(s) 317, 960
TspGWI ACGGA 2 cut(s) 1131, 1179
TspRI CASTG 3 cut(s) 64, 863, 1233
Tth111I GACNNNGTC 1 cut(s) 67
Vha464I CTTAAG 1 cut(s) 608
VpaK11BI GGWCC 1 cut(s) 254
XapI RAATTY 1 cut(s) 950
XceI RCATGY 2 cut(s) 478, 598
XmnI GAANNNNTTC 3 cut(s) 951, 954, 1071
XspI CTAG 7 cut(s) 150, 222, 296, 563, 806, 1166, 1184
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.