pycom15g20810

Isocitrate dehydrogenase NAD regulatory subunit 1

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
Physical Location & Seq
Forward (+)
14910516 .. 14912522
2007 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 795 bp
ATGGGCGGCGGCGTGAGCTCGCTCAATCTGCAGCTGAGGCGGGAGCTCGATCTCTATGCATCCCTCGTCAACTGCTTCAATCTGCCGGGGCTGGTGATGAAGCATGAGAATGTCGATATTATCATGATCAGGGAGAATACTGAGGGCGAGTACTCTGGGCTCGAGCATGAGGTCATTCCTGGCGTCGTTGAAAGCCTTAAGGTGATCACAAAGTTCTGTTCGGAGCGCATTGCTAGATATGCTTTTGAGTACGCTTACCTAAACAACAGAAAGAAGGTGACCGCTGTGCACAAAGCAAACATTATGAAGCTTGCAGATGGTCTCTTCTTGGAGTCCTGCCGTGAGGTGGCCACAAACTATCCTAGCATCGCATACAATGAAGTCATTGTCGATAACTGCTGCATGCAGCTTGTTTCGAAGCCTGAGCAATTTGATGTCATGGTGACACCAAACCTTTATGGTAATCTAGTTGCAAATACAGCAGCTGGTATTGCTGCTGGCACCGGTGTCATGCCAGGAGGCAATGTTGGGGCAGATCATGCTATTTTCGAGCAAGGTGCTTCAGCAGGAAACGTGGGAAATCAGAAAATATTGGAACTAAAGAAAGCAAACCCAGTGGCCCTGCTTCTCTCATCCGCCATGATGTTGAGACATCTGCAATTCCCTTCCTTTGCTGATCGACTAGAAACTGCGGTGGCACGAGTAATATTGGAGGGTAAACGCAGGACAAAGGACCTTGGAGGACAGAGCACCACCCAAGAGGTTGTTGACGCGGTCATTGCTGCCTTAGATTGA

Protein Analysis

265

Amino Acids

28.66

Weight (kDa)

5.8

Isoelectric Point (pI)

32.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Iso_dh PF00180 7 - 259 5.5e-66 Isocitrate/isopropylmalate dehydrogenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0020443)

Species Orthologous Gene IDs
pyrus_communis pycom10g11780 pycom15g20810
rosa_chinensis RchiOBHm_Chr6g0280491
rosa_multiflora Rmu_sc0004211.1_g000030
rosa_samantha Rh6AG243900 Rh6BG246600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 500
AccII CGCG 1 cut(s) 773
AciI CCGC 7 cut(s) 6, 9, 40, 282, 636, 692, 773
AcoI YGGCCR 1 cut(s) 348
AcuI CTGAAG 1 cut(s) 546
AcyI GRCGYC 1 cut(s) 183
AfaI GTAC 2 cut(s) 152, 251
AfiI CCNNNNNNNGG 1 cut(s) 346
AflII CTTAAG 1 cut(s) 197
AgeI ACCGGT 1 cut(s) 503
AgsI TTSAA 2 cut(s) 79, 191
AjnI CCWGG 2 cut(s) 178, 514
AluBI AGCT 6 cut(s) 18, 34, 46, 310, 409, 485
AluI AGCT 6 cut(s) 18, 34, 46, 310, 409, 485
Alw21I GWGCWC 4 cut(s) 20, 48, 291, 752
Alw26I GTCTC 2 cut(s) 326, 643
Alw44I GTGCAC 1 cut(s) 287
AlwNI CAGNNNCTG 1 cut(s) 485
Ama87I CYCGRG 1 cut(s) 161
AoxI GGCC 2 cut(s) 348, 618
ApaLI GTGCAC 1 cut(s) 287
ApeKI GCWGC 6 cut(s) 31, 399, 406, 482, 494, 782
AsiGI ACCGGT 1 cut(s) 503
AspLEI GCGC 1 cut(s) 228
AspS9I GGNCC 2 cut(s) 619, 733
AsuC2I CCSGG 1 cut(s) 87
AsuHPI GGTGA 4 cut(s) 106, 214, 289, 454
AsuII TTCGAA 1 cut(s) 416
AvaI CYCGRG 1 cut(s) 161
AvaII GGWCC 1 cut(s) 733
BaeGI GKGCMC 1 cut(s) 291
BalI TGGCCA 1 cut(s) 350
BanI GGYRCC 1 cut(s) 500
BanII GRGCYC 3 cut(s) 20, 48, 162
BauI CACGAG 1 cut(s) 699
Bbv12I GWGCWC 4 cut(s) 20, 48, 291, 752
BbvCI CCTCAGC 1 cut(s) 35
BbvI GCAGC 6 cut(s) 43, 386, 418, 481, 494, 769
BccI CCATC 1 cut(s) 311
BceAI ACGGC 1 cut(s) 324
BcgI CGANNNNNNTGC 4 cut(s) 38, 72, 539, 573
BciT130I CCWGG 2 cut(s) 180, 516
BclI TGATCA 2 cut(s) 126, 204
BcnI CCSGG 1 cut(s) 87
BcoDI GTCTC 2 cut(s) 326, 643
BfaI CTAG 4 cut(s) 234, 363, 467, 683
BfmI CTRYAG 1 cut(s) 29
BfrI CTTAAG 1 cut(s) 197
BisI GCNGC 8 cut(s) 7, 10, 32, 400, 407, 483, 495, 783
BlsI GCNGC 8 cut(s) 8, 11, 33, 401, 408, 484, 496, 784
BmcAI AGTACT 1 cut(s) 152
Bme1390I CCNGG 3 cut(s) 87, 180, 516
Bme18I GGWCC 1 cut(s) 733
BmeT110I CYCGRG 1 cut(s) 161
BmgT120I GGNCC 2 cut(s) 619, 733
BmiI GGNNCC 1 cut(s) 502
BmrFI CCNGG 3 cut(s) 87, 180, 516
BmrI ACTGGG 1 cut(s) 608
BmsI GCATC 2 cut(s) 68, 375
BmuI ACTGGG 1 cut(s) 608
Bpu10I CCTNAGC 2 cut(s) 35, 423
Bpu14I TTCGAA 1 cut(s) 416
BpuMI CCSGG 1 cut(s) 87
BsaHI GRCGYC 1 cut(s) 183
BsaI GGTCTC 1 cut(s) 326
BsaJI CCNNGG 2 cut(s) 86, 736
BsaWI WCCGGW 1 cut(s) 503
BsaXI ACNNNNNCTCC 2 cut(s) 510, 540
Bsc4I CCNNNNNNNGG 1 cut(s) 346
Bse118I RCCGGY 1 cut(s) 503
Bse1I ACTGG 1 cut(s) 614
Bse3DI GCAATG 3 cut(s) 228, 529, 777
BseBI CCWGG 2 cut(s) 180, 516
BseDI CCNNGG 2 cut(s) 86, 736
BseGI GGATG 2 cut(s) 59, 632
BseLI CCNNNNNNNGG 1 cut(s) 346
BseMI GCAATG 3 cut(s) 228, 529, 777
BseMII CTCAG 3 cut(s) 26, 132, 414
BseNI ACTGG 1 cut(s) 614
BseSI GKGCMC 1 cut(s) 291
BseXI GCAGC 6 cut(s) 43, 386, 418, 481, 494, 769
Bsh1236I CGCG 1 cut(s) 773
BshFI GGCC 2 cut(s) 350, 620
BshNI GGYRCC 1 cut(s) 500
BshTI ACCGGT 1 cut(s) 503
BsiHKAI GWGCWC 4 cut(s) 20, 48, 291, 752
BsiHKCI CYCGRG 1 cut(s) 161
BsiSI CCGG 2 cut(s) 86, 504
BslI CCNNNNNNNGG 1 cut(s) 346
BsmAI GTCTC 2 cut(s) 326, 643
BsnI GGCC 2 cut(s) 350, 620
Bso31I GGTCTC 1 cut(s) 326
BsoBI CYCGRG 1 cut(s) 161
Bsp119I TTCGAA 1 cut(s) 416
Bsp1286I GDGCHC 5 cut(s) 20, 48, 162, 291, 752
Bsp143I GATC 5 cut(s) 49, 126, 204, 535, 676
BspACI CCGC 7 cut(s) 6, 9, 40, 282, 636, 692, 773
BspANI GGCC 2 cut(s) 350, 620
BspCNI CTCAG 3 cut(s) 27, 133, 415
BspFNI CGCG 1 cut(s) 773
BspHI TCATGA 1 cut(s) 123
BspLI GGNNCC 1 cut(s) 502
BspMAI CTGCAG 1 cut(s) 33
BspT104I TTCGAA 1 cut(s) 416
BspT107I GGYRCC 1 cut(s) 500
BspTI CTTAAG 1 cut(s) 197
BspTNI GGTCTC 1 cut(s) 326
BsrDI GCAATG 3 cut(s) 228, 529, 777
BsrFI RCCGGY 1 cut(s) 503
BsrI ACTGG 1 cut(s) 614
BssAI RCCGGY 1 cut(s) 503
BssECI CCNNGG 2 cut(s) 86, 736
BssMI GATC 5 cut(s) 49, 126, 204, 535, 676
BssNI GRCGYC 1 cut(s) 183
BssSI CACGAG 1 cut(s) 699
BssT1I CCWWGG 1 cut(s) 736
Bst2BI CACGAG 1 cut(s) 699
Bst2UI CCWGG 2 cut(s) 180, 516
Bst6I CTCTTC 1 cut(s) 329
BstACI GRCGYC 1 cut(s) 183
BstAFI CTTAAG 1 cut(s) 197
BstAPI GCANNNNNTGC 1 cut(s) 539
BstBI TTCGAA 1 cut(s) 416
BstC8I GCNNGC 4 cut(s) 20, 312, 404, 499
BstDEI CTNAG 4 cut(s) 35, 141, 423, 787
BstEII GGTNACC 1 cut(s) 277
BstF5I GGATG 2 cut(s) 59, 632
BstFNI CGCG 1 cut(s) 773
BstHHI GCGC 1 cut(s) 228
BstKTI GATC 5 cut(s) 52, 129, 207, 538, 679
BstMAI GTCTC 2 cut(s) 326, 643
BstMBI GATC 5 cut(s) 49, 126, 204, 535, 676
BstMWI GCNNNNNNNGC 8 cut(s) 15, 28, 37, 239, 479, 491, 539, 779
BstNI CCWGG 2 cut(s) 180, 516
BstNSI RCATGY 1 cut(s) 406
BstPI GGTNACC 1 cut(s) 277
BstSCI CCNGG 3 cut(s) 85, 178, 514
BstSFI CTRYAG 1 cut(s) 29
BstSLI GKGCMC 1 cut(s) 291
BstUI CGCG 1 cut(s) 773
BstV1I GCAGC 6 cut(s) 43, 386, 418, 481, 494, 769
BsuRI GGCC 2 cut(s) 350, 620
BtgZI GCGATG 1 cut(s) 352
BtsCI GGATG 2 cut(s) 59, 632
BtsIMutI CAGTG 1 cut(s) 621
Cac8I GCNNGC 4 cut(s) 20, 312, 404, 499
CaiI CAGNNNCTG 1 cut(s) 485
CciI TCATGA 1 cut(s) 123
CfoI GCGC 1 cut(s) 228
Cfr10I RCCGGY 1 cut(s) 503
Cfr13I GGNCC 2 cut(s) 619, 733
CseI GACGC 2 cut(s) 172, 779
Csp6I GTAC 2 cut(s) 151, 250
CspAI ACCGGT 1 cut(s) 503
CspCI CAANNNNNGTGG 2 cut(s) 597, 632
CviAII CATG 8 cut(s) 104, 124, 167, 403, 439, 511, 539, 640
CviQI GTAC 2 cut(s) 151, 250
DdeI CTNAG 4 cut(s) 35, 141, 423, 787
DpnI GATC 5 cut(s) 51, 128, 206, 537, 678
DpnII GATC 5 cut(s) 49, 126, 204, 535, 676
EaeI YGGCCR 1 cut(s) 348
Eam1104I CTCTTC 1 cut(s) 329
EarI CTCTTC 1 cut(s) 329
EciI GGCGGA 1 cut(s) 625
Ecl136II GAGCTC 2 cut(s) 18, 46
Eco130I CCWWGG 1 cut(s) 736
Eco24I GRGCYC 3 cut(s) 20, 48, 162
Eco31I GGTCTC 1 cut(s) 326
Eco47I GGWCC 1 cut(s) 733
Eco53kI GAGCTC 2 cut(s) 18, 46
Eco57I CTGAAG 1 cut(s) 546
Eco88I CYCGRG 1 cut(s) 161
Eco91I GGTNACC 1 cut(s) 277
EcoICRI GAGCTC 2 cut(s) 18, 46
EcoO109I RGGNCCY 1 cut(s) 733
EcoO65I GGTNACC 1 cut(s) 277
EcoRII CCWGG 2 cut(s) 178, 514
EcoT14I CCWWGG 1 cut(s) 736
EcoT22I ATGCAT 1 cut(s) 61
EcoT38I GRGCYC 3 cut(s) 20, 48, 162
ErhI CCWWGG 1 cut(s) 736
FaeI CATG 8 cut(s) 107, 127, 170, 406, 442, 514, 542, 643
FatI CATG 8 cut(s) 103, 123, 166, 402, 438, 510, 538, 639
FauI CCCGC 1 cut(s) 33
FbaI TGATCA 2 cut(s) 126, 204
Fnu4HI GCNGC 8 cut(s) 7, 10, 32, 400, 407, 483, 495, 783
FokI GGATG 2 cut(s) 46, 619
FriOI GRGCYC 3 cut(s) 20, 48, 162
Fsp4HI GCNGC 8 cut(s) 7, 10, 32, 400, 407, 483, 495, 783
FspBI CTAG 4 cut(s) 234, 363, 467, 683
GlaI GCGC 1 cut(s) 227
GluI GCNGC 8 cut(s) 7, 10, 32, 400, 407, 483, 495, 783
HaeIII GGCC 2 cut(s) 350, 620
HapII CCGG 2 cut(s) 86, 504
HgaI GACGC 2 cut(s) 172, 779
HhaI GCGC 1 cut(s) 228
Hin1I GRCGYC 1 cut(s) 183
Hin1II CATG 8 cut(s) 107, 127, 170, 406, 442, 514, 542, 643
Hin6I GCGC 1 cut(s) 226
HinP1I GCGC 1 cut(s) 226
HincII GTYRAC 2 cut(s) 70, 769
HindII GTYRAC 2 cut(s) 70, 769
HindIII AAGCTT 1 cut(s) 308
HinfI GANTC 1 cut(s) 332
HpaII CCGG 2 cut(s) 86, 504
HphI GGTGA 4 cut(s) 106, 214, 289, 454
Hpy166II GTNNAC 4 cut(s) 70, 289, 719, 769
Hpy188I TCNGA 2 cut(s) 223, 585
Hpy188III TCNNGA 1 cut(s) 124
Hpy8I GTNNAC 4 cut(s) 70, 289, 719, 769
Hpy99I CGWCG 1 cut(s) 188
HpyAV CCTTC 2 cut(s) 268, 675
HpyCH4IV ACGT 1 cut(s) 573
HpyCH4V TGCA 8 cut(s) 31, 59, 289, 314, 402, 406, 473, 658
HpyF10VI GCNNNNNNNGC 8 cut(s) 15, 28, 37, 239, 479, 491, 539, 779
HpyF3I CTNAG 4 cut(s) 35, 141, 423, 787
HpySE526I ACGT 1 cut(s) 573
Hsp92I GRCGYC 1 cut(s) 183
Hsp92II CATG 8 cut(s) 107, 127, 170, 406, 442, 514, 542, 643
HspAI GCGC 1 cut(s) 226
Ksp22I TGATCA 2 cut(s) 126, 204
Kzo9I GATC 5 cut(s) 49, 126, 204, 535, 676
LmnI GCTCC 2 cut(s) 43, 223
Lsp1109I GCAGC 6 cut(s) 43, 386, 418, 481, 494, 769
LweI GCATC 2 cut(s) 68, 375
MaeI CTAG 4 cut(s) 234, 363, 467, 683
MaeII ACGT 1 cut(s) 573
MaeIII GTNAC 2 cut(s) 277, 442
MalI GATC 5 cut(s) 51, 128, 206, 537, 678
MboI GATC 5 cut(s) 49, 126, 204, 535, 676
MboII GAAGA 1 cut(s) 316
MhlI GDGCHC 5 cut(s) 20, 48, 162, 291, 752
MlsI TGGCCA 1 cut(s) 350
MluCI AATT 2 cut(s) 428, 659
MluNI TGGCCA 1 cut(s) 350
MlyI GAGTC 1 cut(s) 341
MnlI CCTC 9 cut(s) 30, 74, 136, 163, 337, 512, 706, 734, 754
Mox20I TGGCCA 1 cut(s) 350
Mph1103I ATGCAT 1 cut(s) 61
MscI TGGCCA 1 cut(s) 350
MseI TTAA 1 cut(s) 198
MslI CAYNNNNRTG 1 cut(s) 108
Msp20I TGGCCA 1 cut(s) 350
MspA1I CMGCKG 3 cut(s) 34, 284, 485
MspCI CTTAAG 1 cut(s) 197
MspI CCGG 2 cut(s) 86, 504
MspR9I CCNGG 3 cut(s) 87, 180, 516
MvaI CCWGG 2 cut(s) 180, 516
MvnI CGCG 1 cut(s) 773
MwoI GCNNNNNNNGC 8 cut(s) 15, 28, 37, 239, 479, 491, 539, 779
NciI CCSGG 1 cut(s) 87
NdeII GATC 5 cut(s) 49, 126, 204, 535, 676
NlaIII CATG 8 cut(s) 107, 127, 170, 406, 442, 514, 542, 643
NlaIV GGNNCC 1 cut(s) 502
NmuCI GTSAC 2 cut(s) 277, 442
NsiI ATGCAT 1 cut(s) 61
NspI RCATGY 1 cut(s) 406
NspV TTCGAA 1 cut(s) 416
PaeI GCATGC 1 cut(s) 406
PaeR7I CTCGAG 1 cut(s) 161
PagI TCATGA 1 cut(s) 123
PflFI GACNNNGTC 1 cut(s) 773
PinAI ACCGGT 1 cut(s) 503
PkrI GCNGC 8 cut(s) 8, 11, 33, 401, 408, 484, 496, 784
PleI GAGTC 1 cut(s) 340
PpsI GAGTC 1 cut(s) 340
PpuMI RGGWCCY 1 cut(s) 733
Psp124BI GAGCTC 2 cut(s) 20, 48
Psp5II RGGWCCY 1 cut(s) 733
Psp6I CCWGG 2 cut(s) 178, 514
PspEI GGTNACC 1 cut(s) 277
PspGI CCWGG 2 cut(s) 178, 514
PspN4I GGNNCC 1 cut(s) 502
PspPI GGNCC 2 cut(s) 619, 733
PspPPI RGGWCCY 1 cut(s) 733
PspXI VCTCGAGB 1 cut(s) 161
PstI CTGCAG 1 cut(s) 33
PstNI CAGNNNCTG 1 cut(s) 485
PsyI GACNNNGTC 1 cut(s) 773
PvuII CAGCTG 2 cut(s) 34, 485
RsaI GTAC 2 cut(s) 152, 251
RsaNI GTAC 2 cut(s) 151, 250
RseI CAYNNNNRTG 1 cut(s) 108
SacI GAGCTC 2 cut(s) 20, 48
SaqAI TTAA 1 cut(s) 198
SatI GCNGC 8 cut(s) 7, 10, 32, 400, 407, 483, 495, 783
Sau3AI GATC 5 cut(s) 49, 126, 204, 535, 676
Sau96I GGNCC 2 cut(s) 619, 733
ScaI AGTACT 1 cut(s) 152
SchI GAGTC 1 cut(s) 341
ScrFI CCNGG 3 cut(s) 87, 180, 516
SduI GDGCHC 5 cut(s) 20, 48, 162, 291, 752
SfaNI GCATC 2 cut(s) 68, 375
SfcI CTRYAG 1 cut(s) 29
Sfr274I CTCGAG 1 cut(s) 161
SfuI TTCGAA 1 cut(s) 416
SgrAI CRCCGGYG 1 cut(s) 503
SinI GGWCC 1 cut(s) 733
SlaI CTCGAG 1 cut(s) 161
SmiMI CAYNNNNRTG 1 cut(s) 108
SmlI CTYRAG 2 cut(s) 161, 197
SmoI CTYRAG 2 cut(s) 161, 197
SphI GCATGC 1 cut(s) 406
Sse9I AATT 2 cut(s) 428, 659
SsiI CCGC 7 cut(s) 6, 9, 40, 282, 636, 692, 773
SspI AATATT 2 cut(s) 591, 708
SspMI CTAG 4 cut(s) 234, 363, 467, 683
SstI GAGCTC 2 cut(s) 20, 48
StyD4I CCNGG 3 cut(s) 85, 178, 514
StyI CCWWGG 1 cut(s) 736
TaiI ACGT 1 cut(s) 576
TaqI TCGA 7 cut(s) 48, 114, 162, 390, 416, 549, 679
TasI AATT 2 cut(s) 428, 659
TatI WGTACW 1 cut(s) 150
TauI GCSGC 2 cut(s) 9, 12
Tru1I TTAA 1 cut(s) 198
Tru9I TTAA 1 cut(s) 198
TscAI CASTG 1 cut(s) 621
TseFI GTSAC 2 cut(s) 277, 442
TseI GCWGC 6 cut(s) 31, 399, 406, 482, 494, 782
Tsp45I GTSAC 2 cut(s) 277, 442
TspDTI ATGAA 3 cut(s) 113, 320, 393
TspRI CASTG 1 cut(s) 621
Tth111I GACNNNGTC 1 cut(s) 773
Vha464I CTTAAG 1 cut(s) 197
VneI GTGCAC 1 cut(s) 287
VpaK11BI GGWCC 1 cut(s) 733
XceI RCATGY 1 cut(s) 406
XhoI CTCGAG 1 cut(s) 161
XspI CTAG 4 cut(s) 234, 363, 467, 683
ZrmI AGTACT 1 cut(s) 152
Zsp2I ATGCAT 1 cut(s) 61
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.