pycom15g26040

U4 U6 small nuclear ribonucleoprotein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0019275
Physical Location & Seq
Forward (+)
20715597 .. 20716076
480 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 480 bp
ATGGGCTTTTACCTTCATCAATTATTATGGGTGTGTCAGTCACAGCATCAACTACAAGTGGCATGCGATCTTTCTGTTGATTCAGCAAAGAAGATGGTGCTTGATTTTGTTGAAGGTAGAATGGGTTTTATTGCACCGAATCTTTCTGTTATTGTTCGTAGTGCTGTTGCGGCAAAACTTATGGAGACAGCTGGGGGTCTCACATCCTTAGCTAAGATGCCAGCTTGTAATGTTCAGCTTCTTGGTGCTAAGAGAAAAAACCTTGCCAGATTTTCGACTGCAACATCACACTTTCGTGTTGGTTATGTTGAGCAGACAGAAATTTTTCAATCCACACCCCCTTCGTTGAGGATGCATGCTTGTCGGCTCTTGGCTGCAAAATCAACACTTGCAGCACGGGTGGATTCCACAAGAGGAGATCCATCTGGGAACACTGGAAGGGCATTTCGGGAGGAGATTCATAAGAAAATTGAGAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03040 map03040
Pfam Domains
Protein Families
Nop Prp31_C

Protein Analysis

160

Amino Acids

17.46

Weight (kDa)

9.78

Isoelectric Point (pI)

59.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Nop PF01798 24 - 159 8.4e-42 snoRNA binding domain, fibrillarin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019275)

Species Orthologous Gene IDs
malus_domestica MD15G1297300.v1.1
pyrus_communis pycom15g26040
rosa_laevigata RLG00000022097
rosa_multiflora Rmu_sc0024549.1_g000005 Rmu_sc0025855.1_g000002
rosa_rugosa Rorug02G0557900
rosa_samantha Rh2CG613500 Rh2DG661400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 170
AclWI GGATC 1 cut(s) 413
AcsI RAATTY 1 cut(s) 321
AgsI TTSAA 2 cut(s) 113, 329
AleI CACNNNNGTG 1 cut(s) 294
AluBI AGCT 4 cut(s) 191, 212, 224, 238
AluI AGCT 4 cut(s) 191, 212, 224, 238
Alw26I GTCTC 2 cut(s) 179, 203
AlwI GGATC 1 cut(s) 413
ApeKI GCWGC 2 cut(s) 374, 392
ApoI RAATTY 1 cut(s) 321
Asp700I GAANNNNTTC 1 cut(s) 324
BbvI GCAGC 2 cut(s) 361, 404
BccI CCATC 2 cut(s) 88, 430
BcgI CGANNNNNNTGC 2 cut(s) 344, 378
BcoDI GTCTC 2 cut(s) 179, 203
BisI GCNGC 3 cut(s) 171, 375, 393
BlsI GCNGC 3 cut(s) 172, 376, 394
BmsI GCATC 3 cut(s) 55, 207, 342
Bpu10I CCTNAGC 1 cut(s) 208
BsaI GGTCTC 1 cut(s) 203
Bse1I ACTGG 1 cut(s) 439
BseGI GGATG 2 cut(s) 203, 357
BseNI ACTGG 1 cut(s) 439
BseRI GAGGAG 2 cut(s) 429, 467
BseXI GCAGC 2 cut(s) 361, 404
BseYI CCCAGC 1 cut(s) 191
BsmAI GTCTC 2 cut(s) 179, 203
Bso31I GGTCTC 1 cut(s) 203
Bsp143I GATC 2 cut(s) 67, 418
BspACI CCGC 1 cut(s) 170
BspPI GGATC 1 cut(s) 413
BspTNI GGTCTC 1 cut(s) 203
BsrI ACTGG 1 cut(s) 439
BssMI GATC 2 cut(s) 67, 418
BstC8I GCNNGC 3 cut(s) 64, 222, 357
BstDEI CTNAG 3 cut(s) 208, 213, 249
BstF5I GGATG 2 cut(s) 203, 357
BstKTI GATC 2 cut(s) 70, 421
BstMAI GTCTC 2 cut(s) 179, 203
BstMBI GATC 2 cut(s) 67, 418
BstMWI GCNNNNNNNGC 1 cut(s) 170
BstNSI RCATGY 2 cut(s) 66, 359
BstV1I GCAGC 2 cut(s) 361, 404
BstX2I RGATCY 1 cut(s) 418
BstYI RGATCY 1 cut(s) 418
BtsCI GGATG 2 cut(s) 203, 357
BtsIMutI CAGTG 1 cut(s) 432
Cac8I GCNNGC 3 cut(s) 64, 222, 357
CviAII CATG 2 cut(s) 63, 356
CviJI RGCY 7 cut(s) 6, 191, 212, 224, 238, 367, 374
CviKI_1 RGCY 7 cut(s) 6, 191, 212, 224, 238, 367, 374
DdeI CTNAG 3 cut(s) 208, 213, 249
DpnI GATC 2 cut(s) 69, 420
DpnII GATC 2 cut(s) 67, 418
Eco31I GGTCTC 1 cut(s) 203
EcoT22I ATGCAT 1 cut(s) 357
FaeI CATG 2 cut(s) 66, 359
FaiI YATR 6 cut(s) 28, 64, 182, 306, 357, 462
FatI CATG 2 cut(s) 62, 355
Fnu4HI GCNGC 3 cut(s) 171, 375, 393
FokI GGATG 2 cut(s) 190, 364
Fsp4HI GCNGC 3 cut(s) 171, 375, 393
GluI GCNGC 3 cut(s) 171, 375, 393
GsaI CCCAGC 1 cut(s) 195
Hin1II CATG 2 cut(s) 66, 359
HinfI GANTC 4 cut(s) 80, 139, 404, 457
Hpy188III TCNNGA 1 cut(s) 449
HpyAV CCTTC 4 cut(s) 23, 107, 351, 432
HpyCH4V TGCA 5 cut(s) 134, 281, 355, 377, 392
HpyF10VI GCNNNNNNNGC 1 cut(s) 170
HpyF3I CTNAG 3 cut(s) 208, 213, 249
Hsp92II CATG 2 cut(s) 66, 359
Kzo9I GATC 2 cut(s) 67, 418
LpnPI CCDG 5 cut(s) 177, 234, 280, 411, 420
Lsp1109I GCAGC 2 cut(s) 361, 404
LweI GCATC 3 cut(s) 55, 207, 342
MaeIII GTNAC 1 cut(s) 39
MalI GATC 2 cut(s) 69, 420
MboI GATC 2 cut(s) 67, 418
MboII GAAGA 1 cut(s) 103
MflI RGATCY 1 cut(s) 418
MluCI AATT 3 cut(s) 20, 321, 468
MnlI CCTC 3 cut(s) 342, 407, 445
Mph1103I ATGCAT 1 cut(s) 357
MroXI GAANNNNTTC 1 cut(s) 324
MslI CAYNNNNRTG 1 cut(s) 294
MspA1I CMGCKG 1 cut(s) 191
MwoI GCNNNNNNNGC 1 cut(s) 170
NdeII GATC 2 cut(s) 67, 418
NlaIII CATG 2 cut(s) 66, 359
NmuCI GTSAC 1 cut(s) 39
NsiI ATGCAT 1 cut(s) 357
NspI RCATGY 2 cut(s) 66, 359
OliI CACNNNNGTG 1 cut(s) 294
PaeI GCATGC 2 cut(s) 66, 359
PdmI GAANNNNTTC 1 cut(s) 324
PfeI GAWTC 4 cut(s) 80, 139, 404, 457
PkrI GCNGC 3 cut(s) 172, 376, 394
PspFI CCCAGC 1 cut(s) 191
PsuI RGATCY 1 cut(s) 418
PvuII CAGCTG 1 cut(s) 191
RseI CAYNNNNRTG 1 cut(s) 294
SatI GCNGC 3 cut(s) 171, 375, 393
Sau3AI GATC 2 cut(s) 67, 418
SetI ASST 7 cut(s) 15, 118, 193, 214, 226, 240, 264
SfaNI GCATC 3 cut(s) 55, 207, 342
SmiMI CAYNNNNRTG 1 cut(s) 294
SphI GCATGC 2 cut(s) 66, 359
Sse9I AATT 3 cut(s) 20, 321, 468
SsiI CCGC 1 cut(s) 170
TaqI TCGA 1 cut(s) 275
TasI AATT 3 cut(s) 20, 321, 468
TauI GCSGC 1 cut(s) 173
TfiI GAWTC 4 cut(s) 80, 139, 404, 457
TscAI CASTG 1 cut(s) 439
TseFI GTSAC 1 cut(s) 39
TseI GCWGC 2 cut(s) 374, 392
Tsp45I GTSAC 1 cut(s) 39
TspDTI ATGAA 2 cut(s) 5, 449
TspRI CASTG 1 cut(s) 439
XapI RAATTY 1 cut(s) 321
XceI RCATGY 2 cut(s) 66, 359
XmnI GAANNNNTTC 1 cut(s) 324
Zsp2I ATGCAT 1 cut(s) 357
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.