U4 U6 small nuclear ribonucleoprotein
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| Species | Orthologous Gene IDs |
|---|---|
| malus_domestica | MD15G1297300.v1.1 |
| pyrus_communis | pycom15g26040 |
| rosa_laevigata | RLG00000022097 |
| rosa_multiflora | Rmu_sc0024549.1_g000005 Rmu_sc0025855.1_g000002 |
| rosa_rugosa | Rorug02G0557900 |
| rosa_samantha | Rh2CG613500 Rh2DG661400 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 1 cut(s) | 242 |
| AgsI | TTSAA | 2 cut(s) | 42, 75 |
| AluBI | AGCT | 4 cut(s) | 31, 71, 263, 310 |
| AluI | AGCT | 4 cut(s) | 31, 71, 263, 310 |
| AoxI | GGCC | 1 cut(s) | 102 |
| ApeKI | GCWGC | 1 cut(s) | 275 |
| BbvI | GCAGC | 1 cut(s) | 262 |
| BccI | CCATC | 1 cut(s) | 113 |
| BclI | TGATCA | 1 cut(s) | 133 |
| BisI | GCNGC | 2 cut(s) | 243, 276 |
| BlsI | GCNGC | 2 cut(s) | 244, 277 |
| BmsI | GCATC | 1 cut(s) | 115 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 181, 211 |
| BseGI | GGATG | 2 cut(s) | 10, 61 |
| BseRI | GAGGAG | 1 cut(s) | 41 |
| BseXI | GCAGC | 1 cut(s) | 262 |
| BshFI | GGCC | 1 cut(s) | 104 |
| BslFI | GGGAC | 1 cut(s) | 271 |
| BsmFI | GGGAC | 1 cut(s) | 271 |
| BsnI | GGCC | 1 cut(s) | 104 |
| Bsp143I | GATC | 1 cut(s) | 133 |
| BspACI | CCGC | 1 cut(s) | 242 |
| BspANI | GGCC | 1 cut(s) | 104 |
| BssMI | GATC | 1 cut(s) | 133 |
| BstC8I | GCNNGC | 1 cut(s) | 294 |
| BstDEI | CTNAG | 1 cut(s) | 109 |
| BstF5I | GGATG | 2 cut(s) | 10, 61 |
| BstKTI | GATC | 1 cut(s) | 136 |
| BstMBI | GATC | 1 cut(s) | 133 |
| BstNSI | RCATGY | 1 cut(s) | 132 |
| BstV1I | GCAGC | 1 cut(s) | 262 |
| BsuRI | GGCC | 1 cut(s) | 104 |
| BtsCI | GGATG | 2 cut(s) | 10, 61 |
| Cac8I | GCNNGC | 1 cut(s) | 294 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 33, 68 |
| CviAII | CATG | 1 cut(s) | 129 |
| CviJI | RGCY | 7 cut(s) | 31, 71, 91, 104, 140, 263, 310 |
| CviKI_1 | RGCY | 7 cut(s) | 31, 71, 91, 104, 140, 263, 310 |
| DdeI | CTNAG | 1 cut(s) | 109 |
| DpnI | GATC | 1 cut(s) | 135 |
| DpnII | GATC | 1 cut(s) | 133 |
| EcoT22I | ATGCAT | 1 cut(s) | 130 |
| FaeI | CATG | 1 cut(s) | 132 |
| FaiI | YATR | 7 cut(s) | 23, 130, 201, 254, 290, 343, 345 |
| FaqI | GGGAC | 1 cut(s) | 271 |
| FatI | CATG | 1 cut(s) | 128 |
| FbaI | TGATCA | 1 cut(s) | 133 |
| Fnu4HI | GCNGC | 2 cut(s) | 243, 276 |
| FokI | GGATG | 2 cut(s) | 17, 68 |
| Fsp4HI | GCNGC | 2 cut(s) | 243, 276 |
| GluI | GCNGC | 2 cut(s) | 243, 276 |
| HaeIII | GGCC | 1 cut(s) | 104 |
| Hin1II | CATG | 1 cut(s) | 132 |
| HinfI | GANTC | 1 cut(s) | 152 |
| Hpy188III | TCNNGA | 2 cut(s) | 98, 173 |
| HpyCH4V | TGCA | 5 cut(s) | 8, 128, 146, 206, 347 |
| HpyF3I | CTNAG | 1 cut(s) | 109 |
| Hsp92II | CATG | 1 cut(s) | 132 |
| Ksp22I | TGATCA | 1 cut(s) | 133 |
| Kzo9I | GATC | 1 cut(s) | 133 |
| LmnI | GCTCC | 1 cut(s) | 28 |
| LpnPI | CCDG | 4 cut(s) | 111, 249, 306, 333 |
| Lsp1109I | GCAGC | 1 cut(s) | 262 |
| LweI | GCATC | 1 cut(s) | 115 |
| MaeIII | GTNAC | 1 cut(s) | 64 |
| MalI | GATC | 1 cut(s) | 135 |
| MboI | GATC | 1 cut(s) | 133 |
| MboII | GAAGA | 1 cut(s) | 30 |
| MnlI | CCTC | 2 cut(s) | 19, 94 |
| Mph1103I | ATGCAT | 1 cut(s) | 130 |
| MseI | TTAA | 2 cut(s) | 281, 321 |
| MspA1I | CMGCKG | 1 cut(s) | 263 |
| NdeII | GATC | 1 cut(s) | 133 |
| NlaIII | CATG | 1 cut(s) | 132 |
| NsiI | ATGCAT | 1 cut(s) | 130 |
| NspI | RCATGY | 1 cut(s) | 132 |
| PfeI | GAWTC | 1 cut(s) | 152 |
| PkrI | GCNGC | 2 cut(s) | 244, 277 |
| PvuII | CAGCTG | 1 cut(s) | 263 |
| SaqAI | TTAA | 2 cut(s) | 281, 321 |
| SatI | GCNGC | 2 cut(s) | 243, 276 |
| Sau3AI | GATC | 1 cut(s) | 133 |
| SetI | ASST | 5 cut(s) | 33, 73, 252, 265, 312 |
| SfaNI | GCATC | 1 cut(s) | 115 |
| SsiI | CCGC | 1 cut(s) | 242 |
| TaqI | TCGA | 1 cut(s) | 150 |
| TauI | GCSGC | 1 cut(s) | 245 |
| TfiI | GAWTC | 1 cut(s) | 152 |
| Tru1I | TTAA | 2 cut(s) | 281, 321 |
| Tru9I | TTAA | 2 cut(s) | 281, 321 |
| TseI | GCWGC | 1 cut(s) | 275 |
| XceI | RCATGY | 1 cut(s) | 132 |
| Zsp2I | ATGCAT | 1 cut(s) | 130 |