Rorug02G0557900

U4 U6 small nuclear ribonucleoprotein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0019275
Physical Location & Seq
Reverse (-)
68421230 .. 68422483
1254 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0557900.1

Sequence Viewer

Length: 1167 bp
ATGTATGTGACAAAACCTCTTTCCATGTACCGGAAATCTCCAAACACTCTATCCATACAGCCACCAGATGCTCCTTATTCCGGTCATTTAGTAGTTACAGATGAAGAAGCAGAAGCACAAGACTCATGTTGTTGGGGTATCTGCAAGCGTGACCAGATTAAGCAACTACCATTTCCACAGGACAAGATACTCACCGTTGTTTATACATCGGATTACCAAGAAGCATATACCACCAAAGTTTGGTTCATACCGGTTCTTGATCAGCCTCTGTCTTCTAATTGCTACTATGTTATCAAAGCAAATGGAAGACACAAAGGGAAAGTATGCAGATGTTCTAAAGAGAGGGACATAATGAATTGTTGCTTCAGAGACTTCGTGAGGGACAAGAAACCAACACTTTTGAATCTCAGAAACATATACCAACAGGTTAAGATTCATCGGCACCAAGGAGGTGGTTTTTTCGCGGAGTCTCTAGCTCCTGATGGTGTTCCTCCTAAATTTCTAAGAAGGAAAGGATGGGAAGTCCGCAGCTCAAGTTTGTACCGATGGCAATTAAGTGATGCCTTAGGCCTCGATGCTTCCCTCCGATCACGTTTCCCTGACTTCAACTTTCCCATCTTTAAGAAACGTTCAGCTTCTAATGTTGTGGGCAAATGGTACAGTCCGTTTATGTTTGTGAGAGAGAAAGCAACCATAAGACGCCAGATGAAGAAGACGAAATTTTACAGAATAACTCTCGAGCAGTGGTGGGAAGAGATTTACGCCTGTGGGAATACTAGCAACGAAGGCAATGTTGTGAATGTGGATGTAAGCGTGCAAAGGGAAGTGGCTTTCGTATCTGCCGTGGAAGCTGTCAAGGACGACAGAAATGGTCCTACTGGGTTCTCTTGGTTCAAGGCTTATAATCCAGAGAGCCAAAAACTGGTCACCGTAGGTCTGAGTTCAGCAATTGTCCAGAATATGAAATGGGTTTTAGAGGCAGGAGGGTGGGTTACTGGGGACGAAAGGGACGCAAGGGTGCAGAAAGTGGAAGAGATTACAAGCAGGTGGAGGAAGTTTGGCTGTTATGTTCTGGTGGAGAGTTTCTACTTGAGAAGAATGGACGGAAGCTTGGTATTGAGACGTGATTTTAGGCACACTAATAACATTCGATGTAAGTGGGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03040 map03040
Pfam Domains
Protein Families
Nop Prp31_C

Protein Analysis

388

Amino Acids

45.16

Weight (kDa)

9.45

Isoelectric Point (pI)

48.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1262 PF06880 24 - 122 1.4e-42 Protein of unknown function (DUF1262)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019275)

Species Orthologous Gene IDs
malus_domestica MD15G1297300.v1.1
pyrus_communis pycom15g26040
rosa_laevigata RLG00000022097
rosa_multiflora Rmu_sc0024549.1_g000005 Rmu_sc0025855.1_g000002
rosa_rugosa Rorug02G0557900
rosa_samantha Rh2CG613500 Rh2DG661400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 903
AarI CACCTGC 1 cut(s) 1035
Acc36I ACCTGC 1 cut(s) 1035
AccB1I GGYRCC 1 cut(s) 441
AccB7I CCANNNNNTGG 2 cut(s) 240, 922
AccII CGCG 1 cut(s) 464
AciI CCGC 2 cut(s) 464, 526
AclI AACGTT 1 cut(s) 628
AcsI RAATTY 2 cut(s) 497, 719
AcuI CTGAAG 1 cut(s) 349
AcyI GRCGYC 1 cut(s) 700
AfaI GTAC 3 cut(s) 29, 542, 659
AfiI CCNNNNNNNGG 4 cut(s) 30, 80, 240, 922
AgeI ACCGGT 1 cut(s) 250
AgsI TTSAA 3 cut(s) 403, 607, 895
AjiI CACGTC 1 cut(s) 1124
AjuI GAANNNNNNNTTGG 2 cut(s) 227, 259
AluBI AGCT 5 cut(s) 476, 531, 635, 851, 1110
AluI AGCT 5 cut(s) 476, 531, 635, 851, 1110
Alw26I GTCTC 3 cut(s) 363, 474, 1114
AlwNI CAGNNNCTG 1 cut(s) 268
Ama87I CYCGRG 1 cut(s) 737
AoxI GGCC 1 cut(s) 568
ApeKI GCWGC 1 cut(s) 528
ApoI RAATTY 2 cut(s) 497, 719
AsiGI ACCGGT 1 cut(s) 250
AspS9I GGNCC 1 cut(s) 872
AsuHPI GGTGA 2 cut(s) 184, 919
AvaI CYCGRG 1 cut(s) 737
AvaII GGWCC 1 cut(s) 872
AxyI CCTNAGG 1 cut(s) 565
BanI GGYRCC 1 cut(s) 441
BbsI GAAGAC 3 cut(s) 264, 313, 719
BbvI GCAGC 1 cut(s) 540
BccI CCATC 4 cut(s) 476, 510, 540, 623
BceAI ACGGC 1 cut(s) 827
BclI TGATCA 1 cut(s) 259
BcoDI GTCTC 3 cut(s) 363, 474, 1114
BfaI CTAG 2 cut(s) 473, 777
BfuAI ACCTGC 1 cut(s) 1035
BisI GCNGC 1 cut(s) 529
BlsI GCNGC 1 cut(s) 530
Bme18I GGWCC 1 cut(s) 872
BmeT110I CYCGRG 1 cut(s) 737
BmgBI CACGTC 1 cut(s) 1124
BmgT120I GGNCC 1 cut(s) 872
BmiI GGNNCC 1 cut(s) 443
BmrI ACTGGG 2 cut(s) 888, 1005
BmsI GCATC 3 cut(s) 58, 550, 565
BmuI ACTGGG 2 cut(s) 888, 1005
BpiI GAAGAC 3 cut(s) 264, 313, 719
BpuEI CTTGAG 2 cut(s) 517, 1111
BsaHI GRCGYC 1 cut(s) 700
BsaJI CCNNGG 2 cut(s) 445, 843
BsaWI WCCGGW 3 cut(s) 30, 80, 250
BsaXI ACNNNNNCTCC 2 cut(s) 975, 1005
Bsc4I CCNNNNNNNGG 4 cut(s) 30, 80, 240, 922
Bse118I RCCGGY 1 cut(s) 250
Bse1I ACTGG 3 cut(s) 883, 927, 1000
Bse21I CCTNAGG 1 cut(s) 565
Bse3DI GCAATG 1 cut(s) 796
BseDI CCNNGG 2 cut(s) 445, 843
BseGI GGATG 2 cut(s) 521, 811
BseLI CCNNNNNNNGG 4 cut(s) 30, 80, 240, 922
BseMI GCAATG 1 cut(s) 796
BseMII CTCAG 2 cut(s) 421, 929
BseNI ACTGG 3 cut(s) 883, 927, 1000
BseXI GCAGC 1 cut(s) 540
BsgI GTGCAG 1 cut(s) 1040
Bsh1236I CGCG 1 cut(s) 464
BshFI GGCC 1 cut(s) 570
BshNI GGYRCC 1 cut(s) 441
BshTI ACCGGT 1 cut(s) 250
BsiHKCI CYCGRG 1 cut(s) 737
BsiSI CCGG 3 cut(s) 31, 81, 251
BslFI GGGAC 4 cut(s) 359, 395, 1013, 1022
BslI CCNNNNNNNGG 4 cut(s) 30, 80, 240, 922
BsmAI GTCTC 3 cut(s) 363, 474, 1114
BsmBI CGTCTC 1 cut(s) 1114
BsmFI GGGAC 4 cut(s) 359, 395, 1013, 1022
BsnI GGCC 1 cut(s) 570
BsoBI CYCGRG 1 cut(s) 737
Bsp143I GATC 2 cut(s) 259, 587
BspACI CCGC 2 cut(s) 464, 526
BspANI GGCC 1 cut(s) 570
BspCNI CTCAG 2 cut(s) 420, 930
BspFNI CGCG 1 cut(s) 464
BspLI GGNNCC 1 cut(s) 443
BspMI ACCTGC 1 cut(s) 1035
BspT107I GGYRCC 1 cut(s) 441
BsrDI GCAATG 1 cut(s) 796
BsrFI RCCGGY 1 cut(s) 250
BsrI ACTGG 3 cut(s) 883, 927, 1000
BssAI RCCGGY 1 cut(s) 250
BssECI CCNNGG 2 cut(s) 445, 843
BssMI GATC 2 cut(s) 259, 587
BssNI GRCGYC 1 cut(s) 700
BssT1I CCWWGG 1 cut(s) 445
Bst4CI ACNGT 3 cut(s) 196, 662, 931
Bst6I CTCTTC 2 cut(s) 747, 1026
BstACI GRCGYC 1 cut(s) 700
BstC8I GCNNGC 2 cut(s) 146, 815
BstDEI CTNAG 4 cut(s) 407, 503, 565, 938
BstDSI CCRYGG 1 cut(s) 843
BstEII GGTNACC 1 cut(s) 925
BstF5I GGATG 2 cut(s) 521, 811
BstFNI CGCG 1 cut(s) 464
BstKTI GATC 2 cut(s) 262, 590
BstMAI GTCTC 3 cut(s) 363, 474, 1114
BstMBI GATC 2 cut(s) 259, 587
BstMWI GCNNNNNNNGC 2 cut(s) 786, 848
BstPI GGTNACC 1 cut(s) 925
BstUI CGCG 1 cut(s) 464
BstV1I GCAGC 1 cut(s) 540
BstV2I GAAGAC 3 cut(s) 264, 313, 719
BstXI CCANNNNNNTGG 1 cut(s) 452
Bsu36I CCTNAGG 1 cut(s) 565
BsuRI GGCC 1 cut(s) 570
BtgI CCRYGG 1 cut(s) 843
BtrI CACGTC 1 cut(s) 1124
BtsCI GGATG 2 cut(s) 521, 811
BtsI GCAGTG 1 cut(s) 749
BtsIMutI CAGTG 1 cut(s) 749
BveI ACCTGC 1 cut(s) 1035
Cac8I GCNNGC 2 cut(s) 146, 815
CaiI CAGNNNCTG 1 cut(s) 268
Cfr10I RCCGGY 1 cut(s) 250
Cfr13I GGNCC 1 cut(s) 872
CseI GACGC 2 cut(s) 708, 1019
Csp6I GTAC 3 cut(s) 28, 541, 658
CspAI ACCGGT 1 cut(s) 250
CviAII CATG 2 cut(s) 25, 126
CviQI GTAC 3 cut(s) 28, 541, 658
DdeI CTNAG 4 cut(s) 407, 503, 565, 938
DpnI GATC 2 cut(s) 261, 589
DpnII GATC 2 cut(s) 259, 587
Eam1104I CTCTTC 2 cut(s) 747, 1026
EarI CTCTTC 2 cut(s) 747, 1026
Eco130I CCWWGG 1 cut(s) 445
Eco147I AGGCCT 1 cut(s) 570
Eco47I GGWCC 1 cut(s) 872
Eco57I CTGAAG 1 cut(s) 349
Eco81I CCTNAGG 1 cut(s) 565
Eco88I CYCGRG 1 cut(s) 737
Eco91I GGTNACC 1 cut(s) 925
EcoO65I GGTNACC 1 cut(s) 925
EcoT14I CCWWGG 1 cut(s) 445
ErhI CCWWGG 1 cut(s) 445
Esp3I CGTCTC 1 cut(s) 1114
FaeI CATG 2 cut(s) 28, 129
FaqI GGGAC 4 cut(s) 359, 395, 1013, 1022
FatI CATG 2 cut(s) 24, 125
FbaI TGATCA 1 cut(s) 259
Fnu4HI GCNGC 1 cut(s) 529
FokI GGATG 2 cut(s) 528, 818
Fsp4HI GCNGC 1 cut(s) 529
FspBI CTAG 2 cut(s) 473, 777
GluI GCNGC 1 cut(s) 529
HaeIII GGCC 1 cut(s) 570
HapII CCGG 3 cut(s) 31, 81, 251
HgaI GACGC 2 cut(s) 708, 1019
Hin1I GRCGYC 1 cut(s) 700
Hin1II CATG 2 cut(s) 28, 129
HindIII AAGCTT 1 cut(s) 1108
HinfI GANTC 4 cut(s) 122, 403, 433, 467
HpaII CCGG 3 cut(s) 31, 81, 251
HphI GGTGA 2 cut(s) 184, 919
Hpy188I TCNGA 5 cut(s) 211, 368, 410, 587, 939
Hpy188III TCNNGA 6 cut(s) 257, 376, 479, 737, 908, 955
HpyAV CCTTC 2 cut(s) 501, 779
HpyCH4III ACNGT 3 cut(s) 196, 662, 931
HpyCH4IV ACGT 3 cut(s) 592, 628, 1123
HpyCH4V TGCA 4 cut(s) 144, 327, 817, 1021
HpyF10VI GCNNNNNNNGC 2 cut(s) 786, 848
HpyF3I CTNAG 4 cut(s) 407, 503, 565, 938
HpySE526I ACGT 3 cut(s) 592, 628, 1123
Hsp92I GRCGYC 1 cut(s) 700
Hsp92II CATG 2 cut(s) 28, 129
Ksp22I TGATCA 1 cut(s) 259
Kzo9I GATC 2 cut(s) 259, 587
LmnI GCTCC 2 cut(s) 76, 481
Lsp1109I GCAGC 1 cut(s) 540
LweI GCATC 3 cut(s) 58, 550, 565
MaeI CTAG 2 cut(s) 473, 777
MaeII ACGT 3 cut(s) 592, 628, 1123
MaeIII GTNAC 5 cut(s) 7, 94, 149, 925, 991
MalI GATC 2 cut(s) 261, 589
MboI GATC 2 cut(s) 259, 587
MboII GAAGA 8 cut(s) 116, 264, 318, 721, 724, 764, 1043, 1107
MfeI CAATTG 1 cut(s) 948
MluCI AATT 6 cut(s) 277, 355, 497, 551, 719, 948
MlyI GAGTC 2 cut(s) 116, 476
MseI TTAA 4 cut(s) 159, 429, 554, 621
MspI CCGG 3 cut(s) 31, 81, 251
MunI CAATTG 1 cut(s) 948
MvnI CGCG 1 cut(s) 464
MwoI GCNNNNNNNGC 2 cut(s) 786, 848
NdeII GATC 2 cut(s) 259, 587
NlaIII CATG 2 cut(s) 28, 129
NlaIV GGNNCC 1 cut(s) 443
NmuCI GTSAC 3 cut(s) 7, 149, 925
PaeR7I CTCGAG 1 cut(s) 737
PaqCI CACCTGC 1 cut(s) 1035
PceI AGGCCT 1 cut(s) 570
PcsI WCGNNNNNNNCGW 1 cut(s) 840
PfeI GAWTC 2 cut(s) 403, 433
PflMI CCANNNNNTGG 2 cut(s) 240, 922
PinAI ACCGGT 1 cut(s) 250
PkrI GCNGC 1 cut(s) 530
PleI GAGTC 2 cut(s) 116, 475
PpsI GAGTC 2 cut(s) 116, 475
PsiI TTATAA 1 cut(s) 903
Psp1406I AACGTT 1 cut(s) 628
PspEI GGTNACC 1 cut(s) 925
PspN4I GGNNCC 1 cut(s) 443
PspPI GGNCC 1 cut(s) 872
PstNI CAGNNNCTG 1 cut(s) 268
RsaI GTAC 3 cut(s) 29, 542, 659
RsaNI GTAC 3 cut(s) 28, 541, 658
SaqAI TTAA 4 cut(s) 159, 429, 554, 621
SatI GCNGC 1 cut(s) 529
Sau3AI GATC 2 cut(s) 259, 587
Sau96I GGNCC 1 cut(s) 872
SchI GAGTC 2 cut(s) 116, 476
SfaNI GCATC 3 cut(s) 58, 550, 565
Sfr274I CTCGAG 1 cut(s) 737
SinI GGWCC 1 cut(s) 872
SlaI CTCGAG 1 cut(s) 737
SmlI CTYRAG 3 cut(s) 532, 737, 1090
SmoI CTYRAG 3 cut(s) 532, 737, 1090
Sse9I AATT 6 cut(s) 277, 355, 497, 551, 719, 948
SseBI AGGCCT 1 cut(s) 570
SsiI CCGC 2 cut(s) 464, 526
SspMI CTAG 2 cut(s) 473, 777
StuI AGGCCT 1 cut(s) 570
StyI CCWWGG 1 cut(s) 445
TaaI ACNGT 3 cut(s) 196, 662, 931
TaiI ACGT 3 cut(s) 595, 631, 1126
TaqI TCGA 3 cut(s) 573, 738, 1150
TasI AATT 6 cut(s) 277, 355, 497, 551, 719, 948
TfiI GAWTC 2 cut(s) 403, 433
Tru1I TTAA 4 cut(s) 159, 429, 554, 621
Tru9I TTAA 4 cut(s) 159, 429, 554, 621
TscAI CASTG 1 cut(s) 749
TseFI GTSAC 3 cut(s) 7, 149, 925
TseI GCWGC 1 cut(s) 528
Tsp45I GTSAC 3 cut(s) 7, 149, 925
TspDTI ATGAA 6 cut(s) 117, 235, 368, 425, 722, 977
TspGWI ACGGA 2 cut(s) 654, 1119
TspRI CASTG 1 cut(s) 749
Van91I CCANNNNNTGG 2 cut(s) 240, 922
VpaK11BI GGWCC 1 cut(s) 872
XapI RAATTY 2 cut(s) 497, 719
XhoI CTCGAG 1 cut(s) 737
XspI CTAG 2 cut(s) 473, 777
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.