pycom15g28040

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0015521
Physical Location & Seq
Forward (+)
23711917 .. 23713240
1324 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 609 bp
ATGGCAACCATCAATACCTTCCAGTACCCTTACATGCCTATCCTCCACAAGTCCCAACTCCTCCATACCAGTTTTGCATATCAAAGATCATCATTCACCAAAATCCCATGTGATCATCAATCGATCAGAAGAAATCATCAGAAACTAGTCACCTTGGTGACTCATGCATCAGATAAATCTCAACCAGATGCTCAACTTTCTGCTGATGATTCTCCATTATCTTCTTGGAAAAACTGGATTGTGGGATTAATGTTGACAATCATAATACCTTCTTTGAGACACAAATGGGGACCCTTGCTGGCTCTTAAAAGCAAGGTGGACACGGCAGTAGACACAGTGGAATCTGTGACGGAGGTGGTGGAAGAGTTAGCTGAGGAAGTAGAGAAGGTGGCTGAGCAAGTAGAAGACAAGCTTCCTGAGGATGCCAAGCTTAGAGACGCAATGGAGTCCATTGAACATCTTGCTGAGGAAGCAGTCAAGAAAGCTGAGCTAGCCAAGGACGTCATTCATAAGGTGGAGGAAGTGGAGGAAGATGTTGAGAAGGCACTACTTACTGGGTCAGATACTACTGATCCTGCCAAGGGGGAGAAGGGCCAAAACAGTACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

203

Amino Acids

22.6

Weight (kDa)

5.11

Isoelectric Point (pI)

45.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015521)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g20190
malus_domestica MD15G1317800.v1.1
prunus_persica Prupe.6G194000_v2.0.a1 Prupe.6G194000_v2.0.a1
pyrus_communis pycom15g28040
rosa_chinensis RchiOBHm_Chr2g0112261
rosa_laevigata RLG00000017966
rosa_multiflora Rmu_sc0004467.1_g000024 Rmu_sc0011951.1_g000002
rosa_roxburghii Rroxscaffold_2G00131580
rosa_rugosa Rorug02G0179600
rosa_samantha Rh2AG232100 Rh2BG245400 Rh2CG236300 Rh2DG239800
rosa_wichuraiana Rw2G018000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 504
AccI GTMKAC 1 cut(s) 330
AclWI GGATC 1 cut(s) 566
AcyI GRCGYC 1 cut(s) 501
AfaI GTAC 2 cut(s) 26, 604
AfiI CCNNNNNNNGG 1 cut(s) 581
AgsI TTSAA 1 cut(s) 455
AhlI ACTAGT 1 cut(s) 145
AleI CACNNNNGTG 1 cut(s) 155
AluBI AGCT 5 cut(s) 371, 412, 430, 485, 490
AluI AGCT 5 cut(s) 371, 412, 430, 485, 490
Alw26I GTCTC 2 cut(s) 271, 429
AlwI GGATC 1 cut(s) 566
AoxI GGCC 1 cut(s) 592
AseI ATTAAT 1 cut(s) 248
AspS9I GGNCC 2 cut(s) 290, 592
AsuHPI GGTGA 3 cut(s) 88, 142, 169
AsuNHI GCTAGC 1 cut(s) 490
AvaII GGWCC 1 cut(s) 290
AxyI CCTNAGG 1 cut(s) 417
BbsI GAAGAC 1 cut(s) 411
BbvCI CCTCAGC 2 cut(s) 372, 465
BccI CCATC 1 cut(s) 17
BceAI ACGGC 1 cut(s) 339
BclI TGATCA 1 cut(s) 112
BcoDI GTCTC 2 cut(s) 271, 429
BcuI ACTAGT 1 cut(s) 145
BfaI CTAG 2 cut(s) 146, 491
BlpI GCTNAGC 2 cut(s) 393, 486
BmcAI AGTACT 1 cut(s) 604
Bme18I GGWCC 1 cut(s) 290
BmgT120I GGNCC 2 cut(s) 290, 592
BmiI GGNNCC 2 cut(s) 291, 292
BmrI ACTGGG 1 cut(s) 564
BmsI GCATC 3 cut(s) 176, 178, 412
BmtI GCTAGC 1 cut(s) 494
BmuI ACTGGG 1 cut(s) 564
BpiI GAAGAC 1 cut(s) 411
Bpu10I CCTNAGC 2 cut(s) 372, 465
Bpu1102I GCTNAGC 2 cut(s) 393, 486
Bsa29I ATCGAT 1 cut(s) 122
BsaHI GRCGYC 1 cut(s) 501
BsaJI CCNNGG 3 cut(s) 153, 495, 579
Bsc4I CCNNNNNNNGG 1 cut(s) 581
Bse1I ACTGG 4 cut(s) 22, 69, 239, 559
Bse21I CCTNAGG 1 cut(s) 417
Bse3DI GCAATG 1 cut(s) 447
BseCI ATCGAT 1 cut(s) 122
BseDI CCNNGG 3 cut(s) 153, 495, 579
BseGI GGATG 1 cut(s) 427
BseLI CCNNNNNNNGG 1 cut(s) 581
BseMI GCAATG 1 cut(s) 447
BseMII CTCAG 5 cut(s) 363, 384, 408, 456, 477
BseNI ACTGG 4 cut(s) 22, 69, 239, 559
BseRI GAGGAG 1 cut(s) 50
BshFI GGCC 1 cut(s) 594
BshVI ATCGAT 1 cut(s) 122
BslFI GGGAC 2 cut(s) 37, 303
BslI CCNNNNNNNGG 1 cut(s) 581
BsmAI GTCTC 2 cut(s) 271, 429
BsmBI CGTCTC 1 cut(s) 429
BsmFI GGGAC 2 cut(s) 37, 303
BsnI GGCC 1 cut(s) 594
Bsp143I GATC 4 cut(s) 86, 112, 123, 571
Bsp1720I GCTNAGC 2 cut(s) 393, 486
BspANI GGCC 1 cut(s) 594
BspCNI CTCAG 5 cut(s) 364, 385, 409, 457, 478
BspDI ATCGAT 1 cut(s) 122
BspLI GGNNCC 2 cut(s) 291, 292
BspOI GCTAGC 1 cut(s) 494
BspPI GGATC 1 cut(s) 566
BsrDI GCAATG 1 cut(s) 447
BsrI ACTGG 4 cut(s) 22, 69, 239, 559
BssECI CCNNGG 3 cut(s) 153, 495, 579
BssMI GATC 4 cut(s) 86, 112, 123, 571
BssNI GRCGYC 1 cut(s) 501
BssT1I CCWWGG 3 cut(s) 153, 495, 579
Bst4CI ACNGT 2 cut(s) 337, 602
Bst6I CTCTTC 1 cut(s) 357
BstACI GRCGYC 1 cut(s) 501
BstC8I GCNNGC 2 cut(s) 300, 492
BstDEI CTNAG 6 cut(s) 372, 393, 417, 431, 465, 486
BstF5I GGATG 1 cut(s) 427
BstKTI GATC 4 cut(s) 89, 115, 126, 574
BstMAI GTCTC 2 cut(s) 271, 429
BstMBI GATC 4 cut(s) 86, 112, 123, 571
BstMWI GCNNNNNNNGC 2 cut(s) 470, 491
BstNSI RCATGY 1 cut(s) 37
BstV2I GAAGAC 1 cut(s) 411
Bsu15I ATCGAT 1 cut(s) 122
Bsu36I CCTNAGG 1 cut(s) 417
BsuRI GGCC 1 cut(s) 594
BsuTUI ATCGAT 1 cut(s) 122
BtsCI GGATG 1 cut(s) 427
BtsIMutI CAGTG 1 cut(s) 342
Cac8I GCNNGC 2 cut(s) 300, 492
Cfr13I GGNCC 2 cut(s) 290, 592
ClaI ATCGAT 1 cut(s) 122
CseI GACGC 1 cut(s) 446
Csp6I GTAC 2 cut(s) 25, 603
CviAII CATG 3 cut(s) 34, 108, 164
CviJI RGCY 9 cut(s) 302, 371, 392, 412, 430, 485, 490, 494, 594
CviKI_1 RGCY 9 cut(s) 302, 371, 392, 412, 430, 485, 490, 494, 594
CviQI GTAC 2 cut(s) 25, 603
DdeI CTNAG 6 cut(s) 372, 393, 417, 431, 465, 486
DpnI GATC 4 cut(s) 88, 114, 125, 573
DpnII GATC 4 cut(s) 86, 112, 123, 571
Eam1104I CTCTTC 1 cut(s) 357
EarI CTCTTC 1 cut(s) 357
Eco130I CCWWGG 3 cut(s) 153, 495, 579
Eco47I GGWCC 1 cut(s) 290
Eco81I CCTNAGG 1 cut(s) 417
EcoO109I RGGNCCY 1 cut(s) 290
EcoT14I CCWWGG 3 cut(s) 153, 495, 579
EcoT22I ATGCAT 1 cut(s) 169
ErhI CCWWGG 3 cut(s) 153, 495, 579
Esp3I CGTCTC 1 cut(s) 429
FaeI CATG 3 cut(s) 37, 111, 167
FaiI YATR 7 cut(s) 35, 66, 79, 109, 165, 263, 510
FalI AAGNNNNNCTT 2 cut(s) 396, 428
FaqI GGGAC 2 cut(s) 37, 303
FatI CATG 3 cut(s) 33, 107, 163
FbaI TGATCA 1 cut(s) 112
FblI GTMKAC 1 cut(s) 330
FokI GGATG 1 cut(s) 434
FspBI CTAG 2 cut(s) 146, 491
HaeIII GGCC 1 cut(s) 594
HgaI GACGC 1 cut(s) 446
Hin1I GRCGYC 1 cut(s) 501
Hin1II CATG 3 cut(s) 37, 111, 167
HincII GTYRAC 1 cut(s) 255
HindII GTYRAC 1 cut(s) 255
HindIII AAGCTT 2 cut(s) 410, 428
HinfI GANTC 4 cut(s) 160, 209, 341, 446
HphI GGTGA 3 cut(s) 88, 142, 169
Hpy166II GTNNAC 3 cut(s) 255, 319, 331
Hpy188I TCNGA 4 cut(s) 128, 141, 172, 562
Hpy188III TCNNGA 2 cut(s) 416, 478
Hpy8I GTNNAC 3 cut(s) 255, 319, 331
HpyAV CCTTC 5 cut(s) 28, 279, 379, 535, 583
HpyCH4III ACNGT 2 cut(s) 337, 602
HpyCH4IV ACGT 1 cut(s) 501
HpyCH4V TGCA 2 cut(s) 77, 167
HpyF10VI GCNNNNNNNGC 2 cut(s) 470, 491
HpyF3I CTNAG 6 cut(s) 372, 393, 417, 431, 465, 486
HpySE526I ACGT 1 cut(s) 501
Hsp92I GRCGYC 1 cut(s) 501
Hsp92II CATG 3 cut(s) 37, 111, 167
KflI GGGWCCC 1 cut(s) 290
Ksp22I TGATCA 1 cut(s) 112
Kzo9I GATC 4 cut(s) 86, 112, 123, 571
LpnPI CCDG 8 cut(s) 35, 82, 198, 220, 284, 429, 540, 588
LweI GCATC 3 cut(s) 176, 178, 412
MaeI CTAG 2 cut(s) 146, 491
MaeII ACGT 1 cut(s) 501
MaeIII GTNAC 3 cut(s) 148, 157, 346
MalI GATC 4 cut(s) 88, 114, 125, 573
MboI GATC 4 cut(s) 86, 112, 123, 571
MboII GAAGA 5 cut(s) 141, 213, 374, 416, 542
MlyI GAGTC 2 cut(s) 154, 455
MnlI CCTC 8 cut(s) 53, 71, 346, 367, 412, 460, 511, 520
Mph1103I ATGCAT 1 cut(s) 169
MseI TTAA 2 cut(s) 248, 306
MslI CAYNNNNRTG 1 cut(s) 155
MwoI GCNNNNNNNGC 2 cut(s) 470, 491
NdeII GATC 4 cut(s) 86, 112, 123, 571
NheI GCTAGC 1 cut(s) 490
NlaIII CATG 3 cut(s) 37, 111, 167
NlaIV GGNNCC 2 cut(s) 291, 292
NmuCI GTSAC 3 cut(s) 148, 157, 346
NsiI ATGCAT 1 cut(s) 169
NspI RCATGY 1 cut(s) 37
OliI CACNNNNGTG 1 cut(s) 155
PfeI GAWTC 2 cut(s) 209, 341
PleI GAGTC 2 cut(s) 154, 454
PpsI GAGTC 2 cut(s) 154, 454
PpuMI RGGWCCY 1 cut(s) 290
PshBI ATTAAT 1 cut(s) 248
Psp5II RGGWCCY 1 cut(s) 290
PspN4I GGNNCC 2 cut(s) 291, 292
PspPI GGNCC 2 cut(s) 290, 592
PspPPI RGGWCCY 1 cut(s) 290
RsaI GTAC 2 cut(s) 26, 604
RsaNI GTAC 2 cut(s) 25, 603
RseI CAYNNNNRTG 1 cut(s) 155
SaqAI TTAA 2 cut(s) 248, 306
Sau3AI GATC 4 cut(s) 86, 112, 123, 571
Sau96I GGNCC 2 cut(s) 290, 592
ScaI AGTACT 1 cut(s) 604
SchI GAGTC 2 cut(s) 154, 455
SfaNI GCATC 3 cut(s) 176, 178, 412
SinI GGWCC 1 cut(s) 290
SmiMI CAYNNNNRTG 1 cut(s) 155
SpeI ACTAGT 1 cut(s) 145
SspMI CTAG 2 cut(s) 146, 491
StyI CCWWGG 3 cut(s) 153, 495, 579
TaaI ACNGT 2 cut(s) 337, 602
TaiI ACGT 1 cut(s) 504
TaqI TCGA 1 cut(s) 122
TatI WGTACW 1 cut(s) 602
TfiI GAWTC 2 cut(s) 209, 341
Tru1I TTAA 2 cut(s) 248, 306
Tru9I TTAA 2 cut(s) 248, 306
TscAI CASTG 1 cut(s) 342
TseFI GTSAC 3 cut(s) 148, 157, 346
Tsp45I GTSAC 3 cut(s) 148, 157, 346
TspDTI ATGAA 1 cut(s) 497
TspGWI ACGGA 1 cut(s) 365
TspRI CASTG 1 cut(s) 342
VpaK11BI GGWCC 1 cut(s) 290
VspI ATTAAT 1 cut(s) 248
XceI RCATGY 1 cut(s) 37
XcmI CCANNNNNNNNNTGG 1 cut(s) 222
XmiI GTMKAC 1 cut(s) 330
XspI CTAG 2 cut(s) 146, 491
ZraI GACGTC 1 cut(s) 502
ZrmI AGTACT 1 cut(s) 604
Zsp2I ATGCAT 1 cut(s) 169
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.